Wall clock time and date at job start Tue Mar 31 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35470 * 124.78744 * 2 1 4 4 C 1.36372 * 109.76785 * 180.21883 * 3 2 1 5 5 C 1.46917 * 126.76767 * 179.83316 * 4 3 2 6 6 O 1.21674 * 119.99808 * 179.68520 * 5 4 3 7 7 N 1.34776 * 120.00060 * 359.67611 * 5 4 3 8 8 C 1.46496 * 120.00084 * 180.02562 * 7 5 4 9 9 H 1.09008 * 110.91253 * 37.45558 * 8 7 5 10 10 C 1.54908 * 111.00674 * 273.55347 * 8 7 5 11 11 N 1.47425 * 104.92961 * 204.86080 * 10 8 7 12 12 C 1.36938 * 125.65179 * 204.15650 * 11 10 8 13 13 H 1.08005 * 119.99558 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31620 * 120.00086 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99779 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47595 * 59.99628 * 16 14 12 18 18 H 1.48504 * 109.46820 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46978 * 299.99208 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 11 10 8 21 21 C 1.54325 * 107.30599 * 358.92448 * 20 11 10 22 22 H 1.08997 * 110.72163 * 96.18354 * 21 20 11 23 23 O 1.42898 * 110.87178 * 219.38109 * 21 20 11 24 24 C 1.47444 * 106.46582 * 359.56326 * 4 3 2 25 25 C 1.39272 * 134.01224 * 180.25766 * 24 4 3 26 26 C 1.37748 * 119.67365 * 180.02562 * 25 24 4 27 27 C 1.38755 * 120.30185 * 359.97438 * 26 25 24 28 28 C 1.37760 * 120.63420 * 359.97438 * 27 26 25 29 29 C 1.37966 * 124.78484 * 179.73489 * 2 1 3 30 30 H 1.09006 * 109.47058 * 270.26866 * 1 2 3 31 31 H 1.08997 * 109.47033 * 30.26547 * 1 2 3 32 32 H 1.09000 * 109.47511 * 150.26854 * 1 2 3 33 33 H 1.07995 * 125.11886 * 0.04768 * 3 2 1 34 34 H 0.97000 * 119.99844 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.36632 * 323.75475 * 10 8 7 36 36 H 1.08995 * 110.36781 * 85.96712 * 10 8 7 37 37 H 0.96999 * 120.00175 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.85762 * 239.50064 * 20 11 10 39 39 H 1.08999 * 109.87327 * 118.35916 * 20 11 10 40 40 H 0.96700 * 114.00884 * 293.61196 * 23 21 20 41 41 H 1.08005 * 120.16116 * 0.02924 * 25 24 4 42 42 H 1.08004 * 119.85372 * 180.02562 * 26 25 24 43 43 H 1.08000 * 119.68439 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.03914 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2378 1.1126 0.0000 4 6 3.5550 0.7592 -0.0049 5 6 4.7093 1.6680 -0.0100 6 8 5.8391 1.2164 -0.0083 7 7 4.5168 3.0019 -0.0167 8 6 5.6678 3.9081 -0.0223 9 1 6.4730 3.5105 -0.6402 10 6 6.1608 4.1886 1.4192 11 7 6.8418 5.4938 1.3405 12 6 7.8126 5.9404 2.1968 13 1 8.1390 5.3164 3.0157 14 6 8.3764 7.1955 2.0130 15 7 7.9782 7.9561 1.0153 16 14 9.7012 7.8043 3.1807 17 1 10.8623 6.8797 3.1375 18 1 10.1360 9.1637 2.7703 19 1 9.1588 7.8537 4.5621 20 6 6.3028 6.2350 0.1875 21 6 5.2554 5.3281 -0.4923 22 1 4.2511 5.5723 -0.1463 23 8 5.3374 5.4334 -1.9151 24 6 3.5922 -0.7148 0.0025 25 6 4.6180 -1.6568 0.0067 26 6 4.3107 -2.9996 0.0132 27 6 2.9867 -3.4148 0.0161 28 6 1.9622 -2.4938 0.0131 29 6 2.2520 -1.1331 0.0052 30 1 -0.3633 0.0048 1.0277 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3634 -0.8924 -0.5096 33 1 1.8668 2.1268 0.0007 34 1 3.6160 3.3619 -0.0178 35 1 5.3156 4.2425 2.1054 36 1 6.8590 3.4151 1.7386 37 1 8.3724 8.8330 0.8866 38 1 7.1055 6.4642 -0.5134 39 1 5.8304 7.1566 0.5274 40 1 5.0898 6.3021 -2.2602 41 1 5.6493 -1.3361 0.0049 42 1 5.1038 -3.7326 0.0168 43 1 2.7571 -4.4701 0.0216 44 1 0.9351 -2.8276 0.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077322772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:12 Heat of formation + Delta-G solvation = 14.096970 kcal Electronic energy + Delta-G solvation = -27498.273256 eV Core-core repulsion = 23610.198342 eV Total energy + Delta-G solvation = -3888.074913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66085 -39.28226 -37.61976 -37.26728 -35.02754 -33.92831 -33.11477 -31.63551 -30.47259 -29.34734 -28.30833 -27.32470 -26.45499 -24.42167 -23.12756 -22.40718 -21.38206 -20.51763 -20.24531 -19.57344 -17.80415 -17.06439 -16.82470 -16.55794 -15.80960 -15.76802 -15.67637 -15.45495 -14.59072 -14.38576 -14.18958 -14.10807 -13.95744 -13.62254 -13.13374 -13.02410 -12.93038 -12.79141 -12.62181 -12.40045 -12.00113 -11.77601 -11.56201 -11.40567 -11.20404 -11.08549 -10.86455 -10.77009 -10.16274 -9.85461 -9.79825 -9.74960 -9.71477 -9.27590 -8.75677 -8.58795 -8.43310 -7.82748 -6.87524 -5.73089 -3.07042 0.86470 1.42145 1.96371 2.41870 3.41090 3.44377 3.46552 3.49061 3.51310 3.91814 4.31054 4.38549 4.47310 4.51657 4.65672 4.73728 4.84093 4.97639 5.00754 5.07752 5.22121 5.34527 5.41469 5.47582 5.54805 5.59921 5.60964 5.72821 5.86287 5.94514 6.15557 6.19009 6.26909 6.42036 6.54283 6.57904 6.62038 6.71585 6.89846 6.97893 7.00381 7.34817 7.49387 7.74672 7.85538 8.13620 8.20652 8.59585 9.18322 9.78649 10.42365 11.39000 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002629 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.448341 B =10647.542586 C =11329.264262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.475 5.475 3 C 0.102 3.898 4 C -0.217 4.217 5 C 0.588 3.412 6 O -0.538 6.538 7 N -0.715 5.715 8 C 0.143 3.857 9 H 0.103 0.897 10 C 0.130 3.870 11 N -0.600 5.600 12 C -0.227 4.227 13 H 0.080 0.920 14 C -0.008 4.008 15 N -0.925 5.925 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.154 3.846 21 C 0.069 3.931 22 H 0.056 0.944 23 O -0.563 6.563 24 C -0.063 4.063 25 C -0.059 4.059 26 C -0.145 4.145 27 C -0.101 4.101 28 C -0.130 4.130 29 C 0.086 3.914 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.392 0.608 35 H 0.023 0.977 36 H 0.051 0.949 37 H 0.253 0.747 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.376 0.624 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 -16.718 -4.321 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.157 5.157 3 C -0.029 4.029 4 C -0.228 4.228 5 C 0.376 3.624 6 O -0.416 6.416 7 N -0.365 5.365 8 C 0.037 3.963 9 H 0.121 0.879 10 C 0.003 3.997 11 N -0.328 5.328 12 C -0.355 4.355 13 H 0.098 0.902 14 C -0.204 4.204 15 N -0.573 5.573 16 Si 0.745 3.255 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.028 3.972 21 C 0.009 3.991 22 H 0.074 0.926 23 O -0.367 6.367 24 C -0.067 4.067 25 C -0.078 4.078 26 C -0.164 4.164 27 C -0.120 4.120 28 C -0.150 4.150 29 C -0.018 4.018 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.193 0.807 34 H 0.226 0.774 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.222 0.778 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.706 -17.451 -4.245 25.932 hybrid contribution -0.169 1.314 0.579 1.446 sum -18.875 -16.137 -3.666 25.102 Atomic orbital electron populations 1.22045 0.76675 1.04569 1.03416 1.43549 1.06270 1.04332 1.61535 1.22063 0.89889 0.91469 0.99450 1.20139 0.92086 0.92590 1.17954 1.17168 0.87800 0.81405 0.76061 1.90783 1.24056 1.76561 1.50155 1.45741 1.09515 1.05521 1.75722 1.22204 0.88248 0.87403 0.98403 0.87936 1.21852 0.95757 0.89556 0.92577 1.44303 1.43931 1.13014 1.31572 1.19055 1.11513 0.99142 1.05765 0.90177 1.24806 1.00134 0.96873 0.98622 1.69908 1.45260 1.10868 1.31275 0.86145 0.81524 0.77785 0.80007 1.21035 1.21590 1.21144 1.21851 0.93603 0.92189 0.89542 1.23445 0.98749 0.95946 0.80992 0.92589 1.86479 1.91963 1.37609 1.20699 1.18767 0.92042 0.91609 1.04280 1.20772 0.99293 0.91524 0.96167 1.20984 0.96379 0.95475 1.03570 1.20802 0.92327 0.98757 1.00089 1.19941 0.99471 0.88882 1.06744 1.18257 0.89765 0.88214 1.05584 0.90842 0.89496 0.89830 0.80664 0.77449 0.95952 0.93032 0.93645 0.92102 0.93352 0.77756 0.84683 0.85766 0.85755 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.98 59.84 0.66 1.00 16 2 N -0.48 -4.37 3.14 -121.60 -0.38 -4.75 16 3 C 0.10 1.03 10.76 -16.62 -0.18 0.85 16 4 C -0.22 -3.06 6.27 -103.31 -0.65 -3.71 16 5 C 0.59 10.06 7.79 -12.75 -0.10 9.96 16 6 O -0.54 -11.34 15.91 5.21 0.08 -11.25 16 7 N -0.71 -11.15 5.22 -52.96 -0.28 -11.42 16 8 C 0.14 2.77 3.04 -65.79 -0.20 2.57 16 9 H 0.10 2.30 7.73 -51.92 -0.40 1.90 16 10 C 0.13 2.87 6.92 -2.53 -0.02 2.85 16 11 N -0.60 -15.64 3.40 -169.85 -0.58 -16.22 16 12 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 13 H 0.08 2.21 7.83 -52.48 -0.41 1.79 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 15 N -0.93 -27.04 10.34 55.49 0.57 -26.47 16 16 Si 0.92 22.35 29.55 -169.99 -5.02 17.32 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.15 3.67 5.16 -2.92 -0.02 3.66 16 21 C 0.07 1.27 3.95 -24.90 -0.10 1.17 16 22 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 23 O -0.56 -9.74 13.40 -35.23 -0.47 -10.21 16 24 C -0.06 -0.89 6.27 -104.95 -0.66 -1.55 16 25 C -0.06 -0.82 9.85 -39.38 -0.39 -1.20 16 26 C -0.15 -1.58 10.03 -39.57 -0.40 -1.98 16 27 C -0.10 -0.94 10.01 -39.57 -0.40 -1.34 16 28 C -0.13 -1.24 9.91 -39.43 -0.39 -1.63 16 29 C 0.09 0.98 6.79 -83.96 -0.57 0.41 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 32 H 0.08 0.30 8.03 -51.93 -0.42 -0.12 16 33 H 0.18 1.10 7.38 -52.49 -0.39 0.71 16 34 H 0.39 4.67 7.39 -40.82 -0.30 4.37 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 39 H 0.05 1.23 7.52 -51.93 -0.39 0.84 16 40 H 0.38 4.88 9.12 45.56 0.42 5.30 16 41 H 0.14 2.02 7.45 -52.48 -0.39 1.63 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.79 8.02 -52.49 -0.42 0.37 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -36.64 368.54 -9.34 -45.98 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.17 Total: 7.32 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -3.65 Total: 4.15 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.66 Total: -58.86 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.39 Total: -21.46 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.64 -9.34 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077322772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.080 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds