Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35470 * 124.78744 * 2 1 4 4 C 1.36372 * 109.76785 * 180.21883 * 3 2 1 5 5 C 1.46917 * 126.76767 * 179.83316 * 4 3 2 6 6 O 1.21674 * 119.99808 * 179.68520 * 5 4 3 7 7 N 1.34776 * 120.00060 * 359.67611 * 5 4 3 8 8 C 1.46496 * 120.00084 * 180.02562 * 7 5 4 9 9 H 1.09008 * 110.91253 * 37.45558 * 8 7 5 10 10 C 1.54908 * 111.00674 * 273.55347 * 8 7 5 11 11 N 1.47425 * 104.92961 * 204.86080 * 10 8 7 12 12 C 1.36938 * 125.65179 * 204.15650 * 11 10 8 13 13 H 1.08005 * 119.99558 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31620 * 120.00086 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99779 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47595 * 59.99628 * 16 14 12 18 18 H 1.48504 * 109.46820 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46978 * 299.99208 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 11 10 8 21 21 C 1.54325 * 107.30599 * 358.92448 * 20 11 10 22 22 H 1.08997 * 110.72163 * 96.18354 * 21 20 11 23 23 O 1.42898 * 110.87178 * 219.38109 * 21 20 11 24 24 C 1.47444 * 106.46582 * 359.56326 * 4 3 2 25 25 C 1.39272 * 134.01224 * 180.25766 * 24 4 3 26 26 C 1.37748 * 119.67365 * 180.02562 * 25 24 4 27 27 C 1.38755 * 120.30185 * 359.97438 * 26 25 24 28 28 C 1.37760 * 120.63420 * 359.97438 * 27 26 25 29 29 C 1.37966 * 124.78484 * 179.73489 * 2 1 3 30 30 H 1.09006 * 109.47058 * 270.26866 * 1 2 3 31 31 H 1.08997 * 109.47033 * 30.26547 * 1 2 3 32 32 H 1.09000 * 109.47511 * 150.26854 * 1 2 3 33 33 H 1.07995 * 125.11886 * 0.04768 * 3 2 1 34 34 H 0.97000 * 119.99844 * 0.02562 * 7 5 4 35 35 H 1.09002 * 110.36632 * 323.75475 * 10 8 7 36 36 H 1.08995 * 110.36781 * 85.96712 * 10 8 7 37 37 H 0.96999 * 120.00175 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.85762 * 239.50064 * 20 11 10 39 39 H 1.08999 * 109.87327 * 118.35916 * 20 11 10 40 40 H 0.96700 * 114.00884 * 293.61196 * 23 21 20 41 41 H 1.08005 * 120.16116 * 0.02924 * 25 24 4 42 42 H 1.08004 * 119.85372 * 180.02562 * 26 25 24 43 43 H 1.08000 * 119.68439 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.03914 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2378 1.1126 0.0000 4 6 3.5550 0.7592 -0.0049 5 6 4.7093 1.6680 -0.0100 6 8 5.8391 1.2164 -0.0083 7 7 4.5168 3.0019 -0.0167 8 6 5.6678 3.9081 -0.0223 9 1 6.4730 3.5105 -0.6402 10 6 6.1608 4.1886 1.4192 11 7 6.8418 5.4938 1.3405 12 6 7.8126 5.9404 2.1968 13 1 8.1390 5.3164 3.0157 14 6 8.3764 7.1955 2.0130 15 7 7.9782 7.9561 1.0153 16 14 9.7012 7.8043 3.1807 17 1 10.8623 6.8797 3.1375 18 1 10.1360 9.1637 2.7703 19 1 9.1588 7.8537 4.5621 20 6 6.3028 6.2350 0.1875 21 6 5.2554 5.3281 -0.4923 22 1 4.2511 5.5723 -0.1463 23 8 5.3374 5.4334 -1.9151 24 6 3.5922 -0.7148 0.0025 25 6 4.6180 -1.6568 0.0067 26 6 4.3107 -2.9996 0.0132 27 6 2.9867 -3.4148 0.0161 28 6 1.9622 -2.4938 0.0131 29 6 2.2520 -1.1331 0.0052 30 1 -0.3633 0.0048 1.0277 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3634 -0.8924 -0.5096 33 1 1.8668 2.1268 0.0007 34 1 3.6160 3.3619 -0.0178 35 1 5.3156 4.2425 2.1054 36 1 6.8590 3.4151 1.7386 37 1 8.3724 8.8330 0.8866 38 1 7.1055 6.4642 -0.5134 39 1 5.8304 7.1566 0.5274 40 1 5.0898 6.3021 -2.2602 41 1 5.6493 -1.3361 0.0049 42 1 5.1038 -3.7326 0.0168 43 1 2.7571 -4.4701 0.0216 44 1 0.9351 -2.8276 0.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077322772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -13.762526 kcal Electronic energy + Delta-G solvation = -27499.481334 eV Core-core repulsion = 23610.198342 eV Total energy + Delta-G solvation = -3889.282992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47993 -40.72503 -39.18236 -38.04614 -36.67012 -35.51349 -34.03443 -33.44758 -31.22430 -30.58105 -29.77302 -28.78190 -27.49797 -26.25132 -24.08101 -23.43828 -22.38606 -22.12005 -21.83434 -20.75578 -19.14675 -18.59459 -18.25482 -17.60067 -17.15086 -16.77083 -16.52922 -16.47679 -16.28112 -15.86844 -15.52594 -15.32783 -14.96235 -14.84568 -14.47334 -14.38077 -14.22354 -13.75798 -13.71080 -13.57835 -13.25430 -13.15789 -13.13225 -12.77193 -12.70824 -12.55312 -12.21938 -12.13173 -11.93569 -11.87699 -11.52862 -11.14611 -10.81955 -10.76729 -10.62978 -10.15556 -9.24334 -8.97555 -8.66465 -7.89351 -5.26359 0.01636 0.57693 1.02225 1.44759 1.48806 1.54720 1.75191 2.12839 2.41128 2.48517 2.97836 3.13365 3.31256 3.54687 3.69402 3.71094 3.77471 3.90350 4.06152 4.11164 4.19169 4.28165 4.32335 4.45220 4.51523 4.52164 4.57661 4.63675 4.73442 4.79128 4.79701 4.83605 5.02608 5.14384 5.35688 5.43745 5.46714 5.48136 5.58230 5.65567 5.71185 5.72339 6.12906 6.15201 6.25551 6.65534 6.89254 7.04191 7.34671 7.68219 8.31529 9.20458 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002629 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.448341 B =10647.542586 C =11329.264262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.465 5.465 3 C 0.142 3.858 4 C -0.273 4.273 5 C 0.586 3.414 6 O -0.595 6.595 7 N -0.697 5.697 8 C 0.157 3.843 9 H 0.064 0.936 10 C 0.132 3.868 11 N -0.622 5.622 12 C -0.250 4.250 13 H 0.078 0.922 14 C -0.060 4.060 15 N -0.948 5.948 16 Si 0.981 3.019 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.161 3.839 21 C 0.094 3.906 22 H 0.101 0.899 23 O -0.569 6.569 24 C -0.095 4.095 25 C -0.103 4.103 26 C -0.141 4.141 27 C -0.104 4.104 28 C -0.118 4.118 29 C 0.072 3.928 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.415 0.585 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.250 0.750 38 H 0.020 0.980 39 H 0.030 0.970 40 H 0.397 0.603 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.160 0.840 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.896 -17.622 -4.167 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.145 5.145 3 C 0.008 3.992 4 C -0.284 4.284 5 C 0.377 3.623 6 O -0.476 6.476 7 N -0.349 5.349 8 C 0.050 3.950 9 H 0.082 0.918 10 C 0.005 3.995 11 N -0.350 5.350 12 C -0.379 4.379 13 H 0.096 0.904 14 C -0.254 4.254 15 N -0.596 5.596 16 Si 0.809 3.191 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.199 1.199 20 C 0.035 3.965 21 C 0.034 3.966 22 H 0.118 0.882 23 O -0.376 6.376 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.160 4.160 27 C -0.123 4.123 28 C -0.138 4.138 29 C -0.032 4.032 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.237 0.763 34 H 0.252 0.748 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.177 0.823 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.183 -18.375 -4.102 29.865 hybrid contribution 1.100 1.494 0.507 1.924 sum -22.083 -16.880 -3.596 28.027 Atomic orbital electron populations 1.22477 0.73280 1.06705 1.05062 1.43913 1.08080 1.03228 1.59278 1.22607 0.88378 0.93383 0.94853 1.19894 0.92715 0.92244 1.23531 1.17708 0.88141 0.81828 0.74669 1.90749 1.26574 1.77451 1.52859 1.45403 1.09403 1.04653 1.75453 1.21662 0.88831 0.88628 0.95873 0.91750 1.21906 0.95470 0.87322 0.94782 1.44576 1.44041 1.14587 1.31813 1.19398 1.12535 0.99569 1.06385 0.90368 1.25647 1.02313 0.97034 1.00371 1.70110 1.46123 1.10815 1.32535 0.85121 0.78717 0.76914 0.78377 1.20813 1.21457 1.19938 1.21686 0.93620 0.92807 0.88377 1.23122 0.98834 0.93294 0.81327 0.88184 1.86447 1.92156 1.39432 1.19613 1.19104 0.93718 0.92025 1.05122 1.20719 0.98113 0.93364 1.00026 1.21245 0.98183 0.94413 1.02126 1.21213 0.91262 1.00663 0.99197 1.20412 1.01312 0.87882 1.04159 1.18478 0.88931 0.89698 1.06103 0.89354 0.86937 0.88333 0.76318 0.74780 0.93989 0.95503 0.94052 0.96190 0.95190 0.75286 0.88101 0.84337 0.82255 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.98 127.77 1.40 1.64 16 2 N -0.47 -6.79 3.14 -538.63 -1.69 -8.48 16 3 C 0.14 2.40 10.76 83.70 0.90 3.30 16 4 C -0.27 -7.71 6.27 -19.01 -0.12 -7.83 16 5 C 0.59 20.90 7.79 86.52 0.67 21.58 16 6 O -0.59 -27.45 15.91 -4.27 -0.07 -27.51 16 7 N -0.70 -21.45 5.22 -439.69 -2.29 -23.74 16 8 C 0.16 6.23 3.04 46.38 0.14 6.37 16 9 H 0.06 3.08 7.73 -2.38 -0.02 3.06 16 10 C 0.13 6.02 6.92 86.85 0.60 6.63 16 11 N -0.62 -33.55 3.40 -691.30 -2.35 -35.91 16 12 C -0.25 -14.68 10.28 84.03 0.86 -13.81 16 13 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 14 C -0.06 -3.50 5.49 84.86 0.47 -3.04 16 15 N -0.95 -56.90 10.34 21.65 0.22 -56.68 16 16 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.16 7.88 5.16 86.68 0.45 8.33 16 21 C 0.09 3.41 3.95 31.78 0.13 3.54 16 22 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 23 O -0.57 -19.03 13.40 -148.98 -2.00 -21.02 16 24 C -0.10 -2.79 6.27 -20.08 -0.13 -2.91 16 25 C -0.10 -3.12 9.85 22.40 0.22 -2.90 16 26 C -0.14 -3.11 10.03 22.28 0.22 -2.88 16 27 C -0.10 -1.70 10.01 22.28 0.22 -1.47 16 28 C -0.12 -1.85 9.91 22.37 0.22 -1.63 16 29 C 0.07 1.50 6.79 38.92 0.26 1.76 16 30 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.11 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.10 0.14 8.03 -2.39 -0.02 0.12 16 33 H 0.22 1.55 7.38 -2.91 -0.02 1.52 16 34 H 0.41 8.69 7.39 -92.71 -0.69 8.01 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.02 1.13 7.31 -2.38 -0.02 1.11 16 39 H 0.03 1.56 7.52 -2.39 -0.02 1.54 16 40 H 0.40 9.58 9.12 -74.06 -0.68 8.91 16 41 H 0.10 3.56 7.45 -2.91 -0.02 3.54 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.16 1.24 8.02 -2.91 -0.02 1.22 16 Total: -1.00 -88.12 368.54 0.06 -88.06 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.32 Total: 19.80 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.53 Total: 16.68 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -6.12 Total: -124.80 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -2.06 Total: -48.53 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -88.12 0.06 -88.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077322772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.302 kcal (2) G-P(sol) polarization free energy of solvation -88.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds