Wall clock time and date at job start Tue Mar 31 2020 04:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35472 * 125.11936 * 2 1 4 4 H 0.97006 * 124.78028 * 359.77072 * 3 2 1 5 5 C 1.37955 * 110.42675 * 179.73647 * 3 2 1 6 6 C 1.39126 * 133.18745 * 179.97438 * 5 3 2 7 7 C 1.37761 * 119.92768 * 179.97438 * 6 5 3 8 8 C 1.38755 * 120.63763 * 0.08526 * 7 6 5 9 9 C 1.37749 * 120.30072 * 359.94102 * 8 7 6 10 10 C 1.39282 * 119.67093 * 0.02562 * 9 8 7 11 11 C 1.36372 * 125.11246 * 179.69786 * 2 1 3 12 12 C 1.46915 * 126.76998 * 0.24102 * 11 2 1 13 13 O 1.21674 * 119.99928 * 90.02262 * 12 11 2 14 14 N 1.34776 * 119.99811 * 270.02832 * 12 11 2 15 15 C 1.46500 * 119.99546 * 180.02562 * 14 12 11 16 16 H 1.08998 * 110.89377 * 31.11505 * 15 14 12 17 17 C 1.54912 * 111.00674 * 267.19245 * 15 14 12 18 18 N 1.47421 * 104.83518 * 204.92006 * 17 15 14 19 19 C 1.36932 * 125.64852 * 204.10306 * 18 17 15 20 20 H 1.08004 * 120.00097 * 354.82646 * 19 18 17 21 21 C 1.38811 * 120.00199 * 174.81682 * 19 18 17 22 22 N 1.31619 * 119.99858 * 7.06109 * 21 19 18 23 23 Si 1.86807 * 120.00257 * 187.05816 * 21 19 18 24 24 H 1.48497 * 109.47087 * 94.99092 * 23 21 19 25 25 H 1.48496 * 109.47243 * 214.99162 * 23 21 19 26 26 H 1.48504 * 109.46945 * 334.99103 * 23 21 19 27 27 C 1.47023 * 108.70468 * 24.12538 * 18 17 15 28 28 C 1.54324 * 107.26872 * 358.94417 * 27 18 17 29 29 H 1.08999 * 110.87577 * 96.24170 * 28 27 18 30 30 O 1.42902 * 110.71562 * 219.44153 * 28 27 18 31 31 H 1.08992 * 109.47262 * 90.01884 * 1 2 3 32 32 H 1.09002 * 109.47164 * 210.02820 * 1 2 3 33 33 H 1.09012 * 109.46720 * 330.02135 * 1 2 3 34 34 H 1.07998 * 120.03485 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.67983 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.84637 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.16715 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00305 * 359.97438 * 14 12 11 39 39 H 1.09005 * 110.36285 * 323.76145 * 17 15 14 40 40 H 1.09002 * 110.36538 * 86.07639 * 17 15 14 41 41 H 0.97001 * 119.99773 * 179.97438 * 22 21 19 42 42 H 1.08994 * 109.88290 * 239.52262 * 27 18 17 43 43 H 1.09005 * 110.01173 * 118.42874 * 27 18 17 44 44 H 0.96693 * 114.00345 * 293.51834 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.1081 0.0000 4 1 1.9530 2.0191 -0.0032 5 6 3.6208 0.7582 0.0059 6 6 4.7991 1.4979 0.0080 7 6 6.0160 0.8522 0.0149 8 6 6.0810 -0.5338 0.0182 9 6 4.9255 -1.2838 0.0157 10 6 3.6884 -0.6440 0.0094 11 6 2.2914 -1.1155 0.0059 12 6 1.8345 -2.5118 0.0083 13 8 1.6494 -3.0932 -1.0444 14 7 1.6204 -3.1488 1.1766 15 6 1.1654 -4.5413 1.1789 16 1 1.5485 -5.0769 0.3103 17 6 -0.3803 -4.6203 1.2436 18 7 -0.6663 -5.9375 1.8407 19 6 -1.8251 -6.6500 1.6844 20 1 -2.6577 -6.2165 1.1502 21 6 -1.9299 -7.9295 2.2124 22 7 -0.9723 -8.4050 2.9801 23 14 -3.4298 -8.9765 1.8334 24 1 -3.1369 -9.8606 0.6769 25 1 -3.7664 -9.8063 3.0181 26 1 -4.5785 -8.0948 1.5041 27 6 0.4987 -6.3593 2.6323 28 6 1.5692 -5.2561 2.4956 29 1 1.5255 -4.5659 3.3381 30 8 2.8734 -5.8288 2.3806 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3633 0.8903 0.5136 34 1 4.7598 2.5772 0.0049 35 1 6.9282 1.4304 0.0169 36 1 7.0419 -1.0268 0.0232 37 1 4.9787 -2.3625 0.0179 38 1 1.7683 -2.6854 2.0158 39 1 -0.7748 -3.8239 1.8748 40 1 -0.8056 -4.5574 0.2420 41 1 -1.0457 -9.2990 3.3493 42 1 0.8867 -7.3022 2.2473 43 1 0.2166 -6.4744 3.6789 44 1 3.1732 -6.2875 3.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077345391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:24 Heat of formation + Delta-G solvation = 1.849751 kcal Electronic energy + Delta-G solvation = -27782.463220 eV Core-core repulsion = 23893.857227 eV Total energy + Delta-G solvation = -3888.605993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.64013 -39.30598 -37.69628 -37.20842 -35.02442 -33.90311 -32.45944 -31.57179 -31.27677 -29.64395 -28.36772 -27.35122 -26.72974 -24.52148 -22.94730 -22.39393 -21.44550 -20.49872 -20.23896 -19.45611 -18.03266 -17.07145 -16.86147 -16.61312 -16.17316 -15.71558 -15.27888 -15.04162 -14.60880 -14.45958 -14.10088 -13.99333 -13.83952 -13.65772 -13.20003 -13.07663 -12.86289 -12.64965 -12.58666 -12.35325 -12.00503 -11.69904 -11.67148 -11.44131 -11.23219 -11.14319 -10.88641 -10.80200 -10.15990 -9.97097 -9.84965 -9.84427 -9.68315 -9.27863 -8.75209 -8.57505 -8.40340 -7.85525 -6.89504 -5.76325 -3.09434 0.88859 1.41522 2.24145 2.70898 2.85761 3.40155 3.45688 3.47178 3.54960 3.74134 4.38866 4.45913 4.53558 4.67201 4.81246 4.89018 5.02635 5.08246 5.24488 5.27725 5.28445 5.33228 5.44445 5.54492 5.63064 5.67573 5.70335 5.71477 5.86205 5.89085 6.12751 6.17846 6.24479 6.41331 6.45499 6.52618 6.56900 6.64950 6.91809 6.95324 7.21297 7.33095 7.50779 7.73582 7.82632 8.16201 8.18973 8.52778 9.16031 9.76570 10.40291 11.35815 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.002823 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.631822 B = 9915.829927 C =10806.411131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.130 3.870 3 N -0.582 5.582 4 H 0.417 0.583 5 C 0.091 3.909 6 C -0.128 4.128 7 C -0.102 4.102 8 C -0.140 4.140 9 C -0.070 4.070 10 C -0.070 4.070 11 C -0.218 4.218 12 C 0.594 3.406 13 O -0.533 6.533 14 N -0.707 5.707 15 C 0.137 3.863 16 H 0.105 0.895 17 C 0.131 3.869 18 N -0.600 5.600 19 C -0.229 4.229 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.153 3.847 28 C 0.069 3.931 29 H 0.057 0.943 30 O -0.562 6.562 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.398 0.602 39 H 0.023 0.977 40 H 0.051 0.949 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.913 21.823 -1.368 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.018 3.982 3 N -0.185 5.185 4 H 0.254 0.746 5 C -0.014 4.014 6 C -0.148 4.148 7 C -0.121 4.121 8 C -0.160 4.160 9 C -0.089 4.089 10 C -0.075 4.075 11 C -0.228 4.228 12 C 0.379 3.621 13 O -0.409 6.409 14 N -0.357 5.357 15 C 0.032 3.968 16 H 0.123 0.877 17 C 0.003 3.997 18 N -0.327 5.327 19 C -0.357 4.357 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.027 3.973 28 C 0.009 3.991 29 H 0.074 0.926 30 O -0.367 6.367 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.232 0.768 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.585 21.537 -2.664 24.145 hybrid contribution -0.771 -0.146 0.875 1.175 sum 9.815 21.391 -1.790 23.603 Atomic orbital electron populations 1.20625 0.86798 1.04373 1.04116 1.20282 0.93402 0.84903 0.99580 1.41387 1.04151 1.08147 1.64771 0.74614 1.18150 0.84312 0.93864 1.05104 1.19988 0.89650 0.98827 1.06377 1.20788 0.96531 0.94548 1.00254 1.20920 0.97964 0.93766 1.03304 1.20582 0.90307 1.00075 0.97902 1.18770 0.92046 0.91676 1.04983 1.19759 0.91951 0.92442 1.18697 1.17226 0.76453 0.84624 0.83817 1.90825 1.51244 1.67381 1.31473 1.45957 1.67831 1.13686 1.08178 1.22283 0.95500 0.80097 0.98956 0.87654 1.21850 0.91138 0.89310 0.97393 1.44235 1.14980 1.17265 1.56268 1.19079 0.90389 0.95576 1.30684 0.90131 1.24836 0.98467 0.97238 0.99717 1.69938 1.33434 1.17412 1.36056 0.86085 0.81718 0.80432 0.77455 1.21486 1.21766 1.20573 1.21826 0.85050 0.93852 0.96557 1.23454 0.84117 0.95825 0.95708 0.92560 1.86474 1.32758 1.75192 1.42299 0.89553 0.89047 0.90697 0.86228 0.85689 0.85750 0.85721 0.76842 0.95960 0.93119 0.93654 0.91962 0.93556 0.77765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.20 36.01 0.37 -0.51 16 2 C 0.13 1.44 7.12 -81.66 -0.58 0.86 16 3 N -0.58 -5.26 5.99 -6.78 -0.04 -5.30 16 4 H 0.42 2.26 8.96 -40.82 -0.37 1.89 16 5 C 0.09 1.01 7.26 -83.97 -0.61 0.40 16 6 C -0.13 -1.16 10.07 -39.43 -0.40 -1.56 16 7 C -0.10 -0.90 10.01 -39.56 -0.40 -1.30 16 8 C -0.14 -1.43 10.03 -39.57 -0.40 -1.82 16 9 C -0.07 -0.89 10.09 -39.37 -0.40 -1.29 16 10 C -0.07 -0.95 6.36 -104.95 -0.67 -1.61 16 11 C -0.22 -3.10 6.02 -103.31 -0.62 -3.72 16 12 C 0.59 10.10 7.15 -12.75 -0.09 10.01 16 13 O -0.53 -11.30 16.75 5.21 0.09 -11.21 16 14 N -0.71 -11.22 5.19 -52.96 -0.28 -11.49 16 15 C 0.14 2.64 3.15 -65.78 -0.21 2.44 16 16 H 0.11 2.36 7.54 -51.93 -0.39 1.97 16 17 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16 18 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 19 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 20 H 0.08 2.18 7.84 -52.48 -0.41 1.76 16 21 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.75 10.36 55.49 0.57 -26.18 16 23 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 3.64 5.16 -3.06 -0.02 3.62 16 28 C 0.07 1.29 3.98 -24.90 -0.10 1.20 16 29 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 30 O -0.56 -9.97 13.39 -35.23 -0.47 -10.44 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.40 5.30 8.55 -40.82 -0.35 4.95 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.68 7.21 -51.93 -0.37 1.30 16 43 H 0.05 1.18 7.61 -51.93 -0.40 0.79 16 44 H 0.38 5.06 9.12 45.56 0.42 5.47 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -35.55 371.00 -9.73 -45.28 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.21 Total: 9.96 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -4.38 Total: 2.64 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.32 Total: -58.91 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.38 Total: -21.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.55 -9.73 -45.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077345391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.125 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds