Wall clock time and date at job start Tue Mar 31 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35472 * 125.11936 * 2 1 4 4 H 0.97006 * 124.78028 * 359.77072 * 3 2 1 5 5 C 1.37955 * 110.42675 * 179.73647 * 3 2 1 6 6 C 1.39126 * 133.18745 * 179.97438 * 5 3 2 7 7 C 1.37761 * 119.92768 * 179.97438 * 6 5 3 8 8 C 1.38755 * 120.63763 * 0.08526 * 7 6 5 9 9 C 1.37749 * 120.30072 * 359.94102 * 8 7 6 10 10 C 1.39282 * 119.67093 * 0.02562 * 9 8 7 11 11 C 1.36372 * 125.11246 * 179.69786 * 2 1 3 12 12 C 1.46915 * 126.76998 * 0.24102 * 11 2 1 13 13 O 1.21674 * 119.99928 * 90.02262 * 12 11 2 14 14 N 1.34776 * 119.99811 * 270.02832 * 12 11 2 15 15 C 1.46500 * 119.99546 * 180.02562 * 14 12 11 16 16 H 1.08998 * 110.89377 * 31.11505 * 15 14 12 17 17 C 1.54912 * 111.00674 * 267.19245 * 15 14 12 18 18 N 1.47421 * 104.83518 * 204.92006 * 17 15 14 19 19 C 1.36932 * 125.64852 * 204.10306 * 18 17 15 20 20 H 1.08004 * 120.00097 * 354.82646 * 19 18 17 21 21 C 1.38811 * 120.00199 * 174.81682 * 19 18 17 22 22 N 1.31619 * 119.99858 * 7.06109 * 21 19 18 23 23 Si 1.86807 * 120.00257 * 187.05816 * 21 19 18 24 24 H 1.48497 * 109.47087 * 94.99092 * 23 21 19 25 25 H 1.48496 * 109.47243 * 214.99162 * 23 21 19 26 26 H 1.48504 * 109.46945 * 334.99103 * 23 21 19 27 27 C 1.47023 * 108.70468 * 24.12538 * 18 17 15 28 28 C 1.54324 * 107.26872 * 358.94417 * 27 18 17 29 29 H 1.08999 * 110.87577 * 96.24170 * 28 27 18 30 30 O 1.42902 * 110.71562 * 219.44153 * 28 27 18 31 31 H 1.08992 * 109.47262 * 90.01884 * 1 2 3 32 32 H 1.09002 * 109.47164 * 210.02820 * 1 2 3 33 33 H 1.09012 * 109.46720 * 330.02135 * 1 2 3 34 34 H 1.07998 * 120.03485 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.67983 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.84637 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.16715 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00305 * 359.97438 * 14 12 11 39 39 H 1.09005 * 110.36285 * 323.76145 * 17 15 14 40 40 H 1.09002 * 110.36538 * 86.07639 * 17 15 14 41 41 H 0.97001 * 119.99773 * 179.97438 * 22 21 19 42 42 H 1.08994 * 109.88290 * 239.52262 * 27 18 17 43 43 H 1.09005 * 110.01173 * 118.42874 * 27 18 17 44 44 H 0.96693 * 114.00345 * 293.51834 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.1081 0.0000 4 1 1.9530 2.0191 -0.0032 5 6 3.6208 0.7582 0.0059 6 6 4.7991 1.4979 0.0080 7 6 6.0160 0.8522 0.0149 8 6 6.0810 -0.5338 0.0182 9 6 4.9255 -1.2838 0.0157 10 6 3.6884 -0.6440 0.0094 11 6 2.2914 -1.1155 0.0059 12 6 1.8345 -2.5118 0.0083 13 8 1.6494 -3.0932 -1.0444 14 7 1.6204 -3.1488 1.1766 15 6 1.1654 -4.5413 1.1789 16 1 1.5485 -5.0769 0.3103 17 6 -0.3803 -4.6203 1.2436 18 7 -0.6663 -5.9375 1.8407 19 6 -1.8251 -6.6500 1.6844 20 1 -2.6577 -6.2165 1.1502 21 6 -1.9299 -7.9295 2.2124 22 7 -0.9723 -8.4050 2.9801 23 14 -3.4298 -8.9765 1.8334 24 1 -3.1369 -9.8606 0.6769 25 1 -3.7664 -9.8063 3.0181 26 1 -4.5785 -8.0948 1.5041 27 6 0.4987 -6.3593 2.6323 28 6 1.5692 -5.2561 2.4956 29 1 1.5255 -4.5659 3.3381 30 8 2.8734 -5.8288 2.3806 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3633 0.8903 0.5136 34 1 4.7598 2.5772 0.0049 35 1 6.9282 1.4304 0.0169 36 1 7.0419 -1.0268 0.0232 37 1 4.9787 -2.3625 0.0179 38 1 1.7683 -2.6854 2.0158 39 1 -0.7748 -3.8239 1.8748 40 1 -0.8056 -4.5574 0.2420 41 1 -1.0457 -9.2990 3.3493 42 1 0.8867 -7.3022 2.2473 43 1 0.2166 -6.4744 3.6789 44 1 3.1732 -6.2875 3.1772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077345391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:23 Heat of formation + Delta-G solvation = -25.457686 kcal Electronic energy + Delta-G solvation = -27783.647359 eV Core-core repulsion = 23893.857227 eV Total energy + Delta-G solvation = -3889.790132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.49163 -40.76992 -39.26395 -38.01610 -36.69181 -35.52891 -33.75651 -33.08812 -32.03064 -30.63160 -30.02905 -28.84543 -27.83086 -26.38572 -24.14915 -23.23265 -22.35329 -22.22979 -21.85456 -20.69714 -19.09222 -18.81025 -18.32881 -17.54165 -17.35776 -17.31505 -16.56123 -16.04068 -15.93270 -15.78411 -15.54749 -15.37705 -14.89649 -14.70359 -14.53681 -14.46428 -14.21956 -13.89763 -13.75402 -13.61004 -13.26529 -13.17179 -13.12611 -12.77464 -12.74504 -12.43643 -12.40531 -12.08171 -11.96242 -11.89201 -11.56639 -11.26657 -10.88248 -10.75967 -10.66461 -10.18383 -9.18906 -8.96830 -8.70629 -7.89964 -5.25783 0.08044 0.62421 1.33864 1.45256 1.48732 1.50505 1.56729 1.93416 2.27165 2.49005 2.92626 3.12435 3.30993 3.54019 3.59663 3.77669 3.81634 3.93938 4.04590 4.17772 4.21431 4.32900 4.37134 4.40265 4.47121 4.54398 4.56383 4.62458 4.70802 4.82144 4.94398 5.00439 5.04651 5.13029 5.34532 5.41704 5.46782 5.48261 5.60757 5.63646 5.65783 5.70808 6.13024 6.14182 6.51888 6.58420 6.85621 7.04052 7.21379 7.68906 8.32195 9.20510 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.002823 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.631822 B = 9915.829927 C =10806.411131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 N -0.562 5.562 4 H 0.437 0.563 5 C 0.081 3.919 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.136 4.136 9 C -0.107 4.107 10 C -0.097 4.097 11 C -0.266 4.266 12 C 0.600 3.400 13 O -0.585 6.585 14 N -0.691 5.691 15 C 0.150 3.850 16 H 0.069 0.931 17 C 0.134 3.866 18 N -0.621 5.621 19 C -0.247 4.247 20 H 0.084 0.916 21 C -0.061 4.061 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.162 3.838 28 C 0.091 3.909 29 H 0.093 0.907 30 O -0.570 6.570 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.103 0.897 38 H 0.414 0.586 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.249 0.751 42 H 0.022 0.978 43 H 0.026 0.974 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.341 25.507 -0.840 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.038 3.962 3 N -0.166 5.166 4 H 0.278 0.722 5 C -0.024 4.024 6 C -0.138 4.138 7 C -0.122 4.122 8 C -0.155 4.155 9 C -0.125 4.125 10 C -0.101 4.101 11 C -0.277 4.277 12 C 0.388 3.612 13 O -0.465 6.465 14 N -0.341 5.341 15 C 0.044 3.956 16 H 0.087 0.913 17 C 0.007 3.993 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.102 0.898 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.807 3.193 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.190 1.190 27 C 0.036 3.964 28 C 0.031 3.969 29 H 0.111 0.889 30 O -0.378 6.378 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.121 0.879 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.038 25.296 -2.101 27.679 hybrid contribution -0.824 -1.218 0.687 1.623 sum 10.214 24.079 -1.414 26.193 Atomic orbital electron populations 1.20733 0.85062 1.05497 1.04697 1.20509 0.94304 0.84567 0.96771 1.41310 1.03346 1.08661 1.63303 0.72173 1.18368 0.85566 0.92967 1.05511 1.20439 0.88708 1.00535 1.04143 1.21217 0.97989 0.93991 0.99015 1.21214 0.97749 0.94765 1.01737 1.20611 0.91527 0.99472 1.00938 1.18982 0.91737 0.93307 1.06090 1.19558 0.93338 0.91341 1.23421 1.17674 0.74934 0.85680 0.82929 1.90786 1.53487 1.68926 1.33252 1.45735 1.67211 1.12154 1.09012 1.21798 0.94122 0.81822 0.97888 0.91292 1.21920 0.92514 0.88157 0.96706 1.44505 1.14864 1.18639 1.56913 1.19448 0.91416 0.96291 1.30431 0.89844 1.25676 1.01532 0.98389 0.99855 1.70136 1.35155 1.17339 1.36862 0.85058 0.78862 0.78589 0.76815 1.21763 1.21676 1.19046 1.21613 0.85911 0.94172 0.94715 1.23171 0.82994 0.94412 0.96356 0.88914 1.86444 1.31719 1.75492 1.44115 0.89152 0.90455 0.87029 0.82714 0.82291 0.84042 0.87883 0.74932 0.93530 0.94539 0.94137 0.95992 0.95581 0.75425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.20 71.24 0.73 -0.83 16 2 C 0.15 3.12 7.12 41.56 0.30 3.42 16 3 N -0.56 -8.51 5.99 -175.38 -1.05 -9.56 16 4 H 0.44 2.95 8.96 -92.70 -0.83 2.12 16 5 C 0.08 1.60 7.26 38.92 0.28 1.89 16 6 C -0.12 -1.69 10.07 22.37 0.23 -1.47 16 7 C -0.10 -1.47 10.01 22.28 0.22 -1.25 16 8 C -0.14 -2.58 10.03 22.28 0.22 -2.35 16 9 C -0.11 -2.77 10.09 22.41 0.23 -2.55 16 10 C -0.10 -2.59 6.36 -20.08 -0.13 -2.72 16 11 C -0.27 -7.58 6.02 -19.02 -0.11 -7.69 16 12 C 0.60 21.17 7.15 86.52 0.62 21.79 16 13 O -0.58 -26.26 16.75 -4.27 -0.07 -26.33 16 14 N -0.69 -22.20 5.19 -439.68 -2.28 -24.48 16 15 C 0.15 5.97 3.15 46.38 0.15 6.11 16 16 H 0.07 3.28 7.54 -2.39 -0.02 3.27 16 17 C 0.13 5.81 6.93 86.86 0.60 6.41 16 18 N -0.62 -32.75 3.39 -691.98 -2.35 -35.10 16 19 C -0.25 -14.13 10.26 84.03 0.86 -13.26 16 20 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 21 C -0.06 -3.50 5.48 84.86 0.46 -3.04 16 22 N -0.95 -56.69 10.36 21.65 0.22 -56.47 16 23 Si 0.98 46.19 29.56 68.60 2.03 48.22 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.16 7.97 5.16 86.73 0.45 8.42 16 28 C 0.09 3.42 3.98 31.78 0.13 3.54 16 29 H 0.09 2.88 8.00 -2.39 -0.02 2.86 16 30 O -0.57 -20.25 13.39 -148.98 -1.99 -22.24 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.43 7.85 -2.39 -0.02 1.41 16 33 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.10 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.41 10.68 8.55 -92.71 -0.79 9.89 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.02 1.24 7.21 -2.39 -0.02 1.23 16 43 H 0.03 1.37 7.61 -2.38 -0.02 1.35 16 44 H 0.40 10.45 9.12 -74.06 -0.68 9.77 16 Total: -1.00 -82.03 371.00 -1.50 -83.53 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -1.23 Total: 25.99 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.23 Total: 16.44 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.46 Total: -125.61 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -2.07 Total: -48.57 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -82.03 -1.50 -83.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077345391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.076 kcal (2) G-P(sol) polarization free energy of solvation -82.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds