Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36544 * 125.07441 * 2 1 4 4 C 1.34544 * 109.90040 * 180.02562 * 3 2 1 5 5 C 1.45991 * 107.00644 * 359.97438 * 4 3 2 6 6 C 1.37800 * 125.07430 * 180.02562 * 2 1 3 7 7 C 1.38978 * 133.37371 * 359.97130 * 6 2 1 8 8 C 1.38060 * 120.27030 * 179.97438 * 7 6 2 9 9 C 1.38281 * 120.88227 * 359.72289 * 8 7 6 10 10 C 1.39319 * 120.19621 * 0.56002 * 9 8 7 11 11 C 1.47372 * 120.34262 * 179.72243 * 10 9 8 12 12 O 1.21610 * 120.00164 * 179.72615 * 11 10 9 13 13 N 1.34784 * 120.00059 * 359.72122 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72884 * 13 11 10 15 15 H 1.09000 * 110.89120 * 31.11608 * 14 13 11 16 16 C 1.54915 * 111.00254 * 267.19220 * 14 13 11 17 17 N 1.47423 * 104.83110 * 204.91769 * 16 14 13 18 18 C 1.36939 * 125.64779 * 204.17240 * 17 16 14 19 19 H 1.07999 * 119.99913 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00227 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47477 * 59.99785 * 22 20 18 24 24 H 1.48500 * 109.46699 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46634 * 299.99539 * 22 20 18 26 26 C 1.47025 * 108.70507 * 24.13035 * 17 16 14 27 27 C 1.54320 * 107.26998 * 358.93887 * 26 17 16 28 28 H 1.09005 * 110.71852 * 96.16801 * 27 26 17 29 29 O 1.42894 * 110.87340 * 219.37436 * 27 26 17 30 30 H 1.08998 * 109.47172 * 269.96707 * 1 2 3 31 31 H 1.09001 * 109.46665 * 29.96593 * 1 2 3 32 32 H 1.09001 * 109.46964 * 149.96303 * 1 2 3 33 33 H 1.08003 * 125.05474 * 0.04417 * 3 2 1 34 34 H 1.08005 * 126.49779 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.87075 * 359.97438 * 7 6 2 36 36 H 1.07994 * 119.56231 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.90176 * 180.27780 * 9 8 7 38 38 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 39 39 H 1.08993 * 110.36639 * 323.75855 * 16 14 13 40 40 H 1.08997 * 110.36336 * 86.08131 * 16 14 13 41 41 H 0.97001 * 120.00313 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.88199 * 239.52032 * 26 17 16 43 43 H 1.09000 * 110.01134 * 118.42702 * 26 17 16 44 44 H 0.96701 * 114.00003 * 293.61065 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7653 -0.0006 5 6 3.5949 -0.6938 -0.0003 6 6 2.2569 -1.1278 -0.0005 7 6 1.9786 -2.4894 -0.0006 8 6 3.0074 -3.4100 -0.0017 9 6 4.3277 -2.9989 -0.0085 10 6 4.6388 -1.6409 -0.0025 11 6 6.0448 -1.1992 -0.0035 12 8 6.3093 -0.0122 -0.0034 13 7 7.0376 -2.1108 -0.0046 14 6 8.4351 -1.6717 -0.0116 15 1 8.5467 -0.7218 0.5112 16 6 8.9803 -1.5776 -1.4586 17 7 10.4391 -1.7419 -1.3236 18 6 11.3789 -1.2862 -2.2093 19 1 11.0708 -0.7553 -3.0980 20 6 12.7274 -1.5065 -1.9650 21 7 13.1029 -2.1530 -0.8818 22 14 14.0093 -0.8842 -3.1728 23 1 13.9027 0.5922 -3.2910 24 1 15.3648 -1.2457 -2.6859 25 1 13.7795 -1.5051 -4.5021 26 6 10.7180 -2.4752 -0.0802 27 6 9.3617 -2.7555 0.6004 28 1 9.0040 -3.7544 0.3506 29 8 9.4601 -2.5952 2.0169 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5144 33 1 1.8826 2.1332 0.0007 34 1 4.3955 1.4351 -0.0011 35 1 0.9533 -2.8288 0.0002 36 1 2.7781 -4.4653 -0.0022 37 1 5.1200 -3.7327 -0.0138 38 1 6.8265 -3.0576 -0.0050 39 1 8.5639 -2.3754 -2.0734 40 1 8.7464 -0.6041 -1.8894 41 1 14.0452 -2.3073 -0.7112 42 1 11.3434 -1.8691 0.5752 43 1 11.2206 -3.4155 -0.3065 44 1 10.0281 -3.2483 2.4481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077847562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = 19.309868 kcal Electronic energy + Delta-G solvation = -27526.593825 eV Core-core repulsion = 23638.744960 eV Total energy + Delta-G solvation = -3887.848865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50262 -39.53488 -37.83327 -36.83052 -35.01566 -33.99607 -32.98786 -31.81259 -30.60810 -29.16188 -28.25879 -26.97618 -26.39832 -24.58547 -23.48222 -21.75917 -21.40553 -20.48979 -20.17983 -19.74176 -17.60957 -17.03648 -16.90618 -16.53767 -16.19700 -15.63427 -15.58030 -15.29282 -14.70378 -14.47889 -14.10530 -13.99437 -13.87657 -13.35445 -13.06275 -12.98005 -12.88882 -12.63021 -12.54048 -12.38696 -12.03334 -11.79903 -11.54153 -11.52081 -11.37084 -11.19602 -10.85963 -10.76460 -10.15794 -9.84998 -9.79320 -9.72966 -9.65467 -9.24850 -8.74820 -8.57088 -8.37213 -7.75977 -6.87085 -5.72302 -3.06623 0.60491 1.40199 2.58065 2.61048 3.05635 3.38713 3.43508 3.46805 3.48695 3.97393 4.41469 4.46305 4.50911 4.66070 4.68159 4.76013 4.80432 4.88213 5.02704 5.09531 5.25984 5.30968 5.44239 5.48288 5.59830 5.63715 5.72905 5.78816 5.88108 6.01738 6.15188 6.19912 6.24157 6.26863 6.54247 6.59288 6.65037 6.70706 6.97104 7.02093 7.10849 7.37164 7.51030 7.75407 7.82875 8.17369 8.21733 8.53209 9.19173 9.79251 10.42723 11.39445 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.002577 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.388050 B =10861.474904 C =11434.849071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.492 5.492 3 C 0.043 3.957 4 C -0.180 4.180 5 C -0.058 4.058 6 C 0.086 3.914 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.110 4.110 10 C -0.080 4.080 11 C 0.557 3.443 12 O -0.530 6.530 13 N -0.711 5.711 14 C 0.139 3.861 15 H 0.106 0.894 16 C 0.130 3.870 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.915 3.085 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.154 3.846 27 C 0.068 3.932 28 H 0.056 0.944 29 O -0.562 6.562 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.395 0.605 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.253 0.747 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.139 -2.519 4.090 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.176 5.176 3 C -0.081 4.081 4 C -0.205 4.205 5 C -0.064 4.064 6 C -0.020 4.020 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.130 4.130 10 C -0.084 4.084 11 C 0.345 3.655 12 O -0.407 6.407 13 N -0.362 5.362 14 C 0.034 3.966 15 H 0.124 0.876 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.356 4.356 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.074 0.926 29 O -0.367 6.367 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.230 0.770 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.443 -1.111 3.957 26.760 hybrid contribution 0.907 -0.726 -0.512 1.270 sum -25.536 -1.837 3.444 25.832 Atomic orbital electron populations 1.21905 0.77259 1.04082 1.02842 1.43740 1.05746 1.04275 1.63839 1.21945 0.90496 0.91042 1.04608 1.21991 0.96005 0.93124 1.09357 1.18978 0.90724 0.93698 1.03011 1.18162 0.89976 0.88396 1.05418 1.20101 0.99564 0.89113 1.04074 1.20681 0.91752 0.99102 1.01253 1.21123 0.96945 0.94152 1.00808 1.19431 0.92171 0.92777 1.04034 1.18092 0.84764 0.86040 0.76651 1.90757 1.84344 1.16403 1.49212 1.45839 1.06132 1.09348 1.74851 1.22258 0.77856 0.98821 0.97685 0.87572 1.21854 0.85917 0.99245 0.92731 1.44236 0.99365 1.65754 1.23410 1.19048 0.85847 1.29962 1.00703 0.90198 1.24813 0.96942 1.00663 0.98006 1.69913 1.15212 1.45764 1.26345 0.86144 0.80646 0.78565 0.80091 1.21047 1.21587 1.21136 1.21805 0.90102 0.97386 0.87859 1.23465 0.98295 0.96451 0.81006 0.92572 1.86479 1.71844 1.58732 1.19648 0.91408 0.89923 0.90275 0.81307 0.82328 0.86222 0.85157 0.85453 0.76968 0.95838 0.93129 0.93630 0.92129 0.93349 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.02 59.85 0.66 1.07 16 2 N -0.49 -4.76 3.17 -121.81 -0.39 -5.14 16 3 C 0.04 0.44 11.29 -16.76 -0.19 0.25 16 4 C -0.18 -2.48 10.24 -37.78 -0.39 -2.87 16 5 C -0.06 -0.85 6.15 -104.85 -0.64 -1.49 16 6 C 0.09 1.02 6.80 -83.99 -0.57 0.44 16 7 C -0.11 -1.03 9.94 -39.37 -0.39 -1.43 16 8 C -0.11 -1.02 9.99 -39.63 -0.40 -1.41 16 9 C -0.11 -1.24 9.53 -39.16 -0.37 -1.62 16 10 C -0.08 -1.18 5.90 -104.75 -0.62 -1.79 16 11 C 0.56 9.70 7.76 -12.54 -0.10 9.60 16 12 O -0.53 -11.01 14.72 5.27 0.08 -10.94 16 13 N -0.71 -11.52 5.15 -52.81 -0.27 -11.79 16 14 C 0.14 2.74 3.15 -65.78 -0.21 2.54 16 15 H 0.11 2.41 7.53 -51.93 -0.39 2.02 16 16 C 0.13 2.87 6.93 -2.53 -0.02 2.85 16 17 N -0.60 -15.66 3.39 -170.08 -0.58 -16.24 16 18 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 22 Si 0.92 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.72 5.15 -3.06 -0.02 3.70 16 27 C 0.07 1.29 3.97 -24.90 -0.10 1.19 16 28 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 29 O -0.56 -10.05 13.40 -35.23 -0.47 -10.53 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 32 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.16 2.37 7.16 -52.48 -0.38 1.99 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.15 6.40 -52.49 -0.34 0.82 16 38 H 0.40 5.13 6.60 -40.82 -0.27 4.86 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 42 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 43 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 44 H 0.38 5.08 9.12 45.56 0.42 5.50 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -36.22 365.19 -9.24 -45.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.07 Total: 8.78 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.60 Total: 4.10 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.66 Total: -59.71 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.39 Total: -21.46 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.22 -9.24 -45.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077847562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.768 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds