Wall clock time and date at job start Tue Mar 31 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36544 * 125.07441 * 2 1 4 4 C 1.34544 * 109.90040 * 180.02562 * 3 2 1 5 5 C 1.45991 * 107.00644 * 359.97438 * 4 3 2 6 6 C 1.37800 * 125.07430 * 180.02562 * 2 1 3 7 7 C 1.38978 * 133.37371 * 359.97130 * 6 2 1 8 8 C 1.38060 * 120.27030 * 179.97438 * 7 6 2 9 9 C 1.38281 * 120.88227 * 359.72289 * 8 7 6 10 10 C 1.39319 * 120.19621 * 0.56002 * 9 8 7 11 11 C 1.47372 * 120.34262 * 179.72243 * 10 9 8 12 12 O 1.21610 * 120.00164 * 179.72615 * 11 10 9 13 13 N 1.34784 * 120.00059 * 359.72122 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72884 * 13 11 10 15 15 H 1.09000 * 110.89120 * 31.11608 * 14 13 11 16 16 C 1.54915 * 111.00254 * 267.19220 * 14 13 11 17 17 N 1.47423 * 104.83110 * 204.91769 * 16 14 13 18 18 C 1.36939 * 125.64779 * 204.17240 * 17 16 14 19 19 H 1.07999 * 119.99913 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00227 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47477 * 59.99785 * 22 20 18 24 24 H 1.48500 * 109.46699 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46634 * 299.99539 * 22 20 18 26 26 C 1.47025 * 108.70507 * 24.13035 * 17 16 14 27 27 C 1.54320 * 107.26998 * 358.93887 * 26 17 16 28 28 H 1.09005 * 110.71852 * 96.16801 * 27 26 17 29 29 O 1.42894 * 110.87340 * 219.37436 * 27 26 17 30 30 H 1.08998 * 109.47172 * 269.96707 * 1 2 3 31 31 H 1.09001 * 109.46665 * 29.96593 * 1 2 3 32 32 H 1.09001 * 109.46964 * 149.96303 * 1 2 3 33 33 H 1.08003 * 125.05474 * 0.04417 * 3 2 1 34 34 H 1.08005 * 126.49779 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.87075 * 359.97438 * 7 6 2 36 36 H 1.07994 * 119.56231 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.90176 * 180.27780 * 9 8 7 38 38 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 39 39 H 1.08993 * 110.36639 * 323.75855 * 16 14 13 40 40 H 1.08997 * 110.36336 * 86.08131 * 16 14 13 41 41 H 0.97001 * 120.00313 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.88199 * 239.52032 * 26 17 16 43 43 H 1.09000 * 110.01134 * 118.42702 * 26 17 16 44 44 H 0.96701 * 114.00003 * 293.61065 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7653 -0.0006 5 6 3.5949 -0.6938 -0.0003 6 6 2.2569 -1.1278 -0.0005 7 6 1.9786 -2.4894 -0.0006 8 6 3.0074 -3.4100 -0.0017 9 6 4.3277 -2.9989 -0.0085 10 6 4.6388 -1.6409 -0.0025 11 6 6.0448 -1.1992 -0.0035 12 8 6.3093 -0.0122 -0.0034 13 7 7.0376 -2.1108 -0.0046 14 6 8.4351 -1.6717 -0.0116 15 1 8.5467 -0.7218 0.5112 16 6 8.9803 -1.5776 -1.4586 17 7 10.4391 -1.7419 -1.3236 18 6 11.3789 -1.2862 -2.2093 19 1 11.0708 -0.7553 -3.0980 20 6 12.7274 -1.5065 -1.9650 21 7 13.1029 -2.1530 -0.8818 22 14 14.0093 -0.8842 -3.1728 23 1 13.9027 0.5922 -3.2910 24 1 15.3648 -1.2457 -2.6859 25 1 13.7795 -1.5051 -4.5021 26 6 10.7180 -2.4752 -0.0802 27 6 9.3617 -2.7555 0.6004 28 1 9.0040 -3.7544 0.3506 29 8 9.4601 -2.5952 2.0169 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3633 -0.8897 -0.5144 33 1 1.8826 2.1332 0.0007 34 1 4.3955 1.4351 -0.0011 35 1 0.9533 -2.8288 0.0002 36 1 2.7781 -4.4653 -0.0022 37 1 5.1200 -3.7327 -0.0138 38 1 6.8265 -3.0576 -0.0050 39 1 8.5639 -2.3754 -2.0734 40 1 8.7464 -0.6041 -1.8894 41 1 14.0452 -2.3073 -0.7112 42 1 11.3434 -1.8691 0.5752 43 1 11.2206 -3.4155 -0.3065 44 1 10.0281 -3.2483 2.4481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077847562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:15 Heat of formation + Delta-G solvation = -7.850652 kcal Electronic energy + Delta-G solvation = -27527.771594 eV Core-core repulsion = 23638.744960 eV Total energy + Delta-G solvation = -3889.026634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33099 -40.93061 -39.39006 -37.74417 -36.69021 -35.59269 -33.76674 -33.66488 -31.66090 -30.11170 -29.91480 -28.70467 -27.03386 -26.43619 -24.63214 -22.68578 -22.52571 -22.20763 -21.73973 -20.88122 -19.12924 -18.46209 -18.24347 -17.69670 -17.24940 -17.09031 -16.47097 -16.32191 -16.13272 -15.84114 -15.67566 -15.48432 -14.93662 -14.57799 -14.45880 -14.25941 -14.02397 -13.77157 -13.66475 -13.62484 -13.17006 -13.15478 -13.10281 -12.77512 -12.70842 -12.59737 -12.42358 -12.17602 -12.13266 -11.88886 -11.54975 -11.10637 -10.79238 -10.76176 -10.61523 -10.17258 -9.18226 -8.98060 -8.59389 -7.89031 -5.26611 -0.31124 0.60030 1.45018 1.49116 1.55100 1.67592 1.90006 1.96394 2.06546 2.47846 2.98974 3.12219 3.31280 3.54280 3.60719 3.87314 3.91288 3.95164 3.97925 4.04573 4.16235 4.21104 4.27831 4.43105 4.50006 4.54275 4.55820 4.66619 4.76540 4.80408 4.85175 4.97302 5.00221 5.12583 5.35612 5.41446 5.43139 5.45772 5.46998 5.65359 5.74365 5.75075 6.12710 6.19155 6.41707 6.55695 6.87571 7.04018 7.23971 7.68093 8.31101 9.20582 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.002577 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.388050 B =10861.474904 C =11434.849071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.487 5.487 3 C 0.072 3.928 4 C -0.240 4.240 5 C -0.092 4.092 6 C 0.069 3.931 7 C -0.090 4.090 8 C -0.111 4.111 9 C -0.099 4.099 10 C -0.122 4.122 11 C 0.553 3.447 12 O -0.578 6.578 13 N -0.696 5.696 14 C 0.153 3.847 15 H 0.069 0.931 16 C 0.132 3.868 17 N -0.621 5.621 18 C -0.250 4.250 19 H 0.080 0.920 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.273 1.273 26 C 0.162 3.838 27 C 0.091 3.909 28 H 0.097 0.903 29 O -0.569 6.569 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.206 0.794 34 H 0.128 0.872 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.149 0.851 38 H 0.414 0.586 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.020 0.980 43 H 0.029 0.971 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.724 -4.625 3.836 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.170 5.170 3 C -0.054 4.054 4 C -0.265 4.265 5 C -0.097 4.097 6 C -0.037 4.037 7 C -0.111 4.111 8 C -0.130 4.130 9 C -0.118 4.118 10 C -0.126 4.126 11 C 0.343 3.657 12 O -0.459 6.459 13 N -0.349 5.349 14 C 0.046 3.954 15 H 0.088 0.912 16 C 0.005 3.995 17 N -0.349 5.349 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.199 1.199 26 C 0.037 3.963 27 C 0.031 3.969 28 H 0.115 0.885 29 O -0.377 6.377 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.223 0.777 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.166 0.834 38 H 0.253 0.747 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -30.088 -3.276 3.714 30.493 hybrid contribution 1.867 -0.041 -0.406 1.911 sum -28.221 -3.318 3.308 28.607 Atomic orbital electron populations 1.22284 0.74103 1.06026 1.04358 1.44080 1.07484 1.03304 1.62114 1.22366 0.89396 0.92742 1.00916 1.21901 0.97035 0.93387 1.14180 1.19332 0.92452 0.94017 1.03946 1.18454 0.89111 0.89929 1.06230 1.20621 1.01618 0.87930 1.00914 1.21149 0.90565 1.01087 1.00162 1.21457 0.98894 0.92818 0.98669 1.19313 0.90044 0.94609 1.08602 1.18725 0.86232 0.85433 0.75290 1.90728 1.85191 1.18507 1.51454 1.45565 1.04297 1.10312 1.74691 1.21737 0.80081 0.97847 0.95698 0.91235 1.21916 0.84268 0.98741 0.94554 1.44507 1.00721 1.65984 1.23703 1.19407 0.86907 1.30214 1.01343 0.90201 1.25673 0.98795 1.01104 0.99896 1.70119 1.15180 1.46583 1.27759 0.85103 0.77709 0.77961 0.78243 1.20714 1.21543 1.19913 1.21615 0.92515 0.95285 0.86919 1.23166 0.94764 0.97775 0.81184 0.88529 1.86447 1.72349 1.60128 1.18767 0.90013 0.87846 0.88644 0.77740 0.85440 0.82437 0.81207 0.83381 0.74721 0.93830 0.95108 0.94060 0.96167 0.95246 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.02 127.77 1.41 1.85 16 2 N -0.49 -8.24 3.17 -539.30 -1.71 -9.96 16 3 C 0.07 1.43 11.29 83.11 0.94 2.37 16 4 C -0.24 -7.13 10.24 23.43 0.24 -6.89 16 5 C -0.09 -2.73 6.15 -20.01 -0.12 -2.85 16 6 C 0.07 1.49 6.80 38.97 0.27 1.76 16 7 C -0.09 -1.37 9.94 22.41 0.22 -1.15 16 8 C -0.11 -1.62 9.99 22.24 0.22 -1.40 16 9 C -0.10 -2.01 9.53 22.54 0.21 -1.79 16 10 C -0.12 -3.62 5.90 -19.95 -0.12 -3.74 16 11 C 0.55 20.27 7.76 86.65 0.67 20.94 16 12 O -0.58 -26.30 14.72 -4.06 -0.06 -26.36 16 13 N -0.70 -22.72 5.15 -439.25 -2.26 -24.98 16 14 C 0.15 6.23 3.15 46.39 0.15 6.37 16 15 H 0.07 3.37 7.53 -2.39 -0.02 3.35 16 16 C 0.13 6.03 6.93 86.86 0.60 6.63 16 17 N -0.62 -33.61 3.39 -692.00 -2.35 -35.96 16 18 C -0.25 -14.65 10.28 84.03 0.86 -13.78 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 21 N -0.95 -57.24 10.31 21.65 0.22 -57.02 16 22 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.16 8.10 5.15 86.73 0.45 8.55 16 27 C 0.09 3.44 3.97 31.78 0.13 3.57 16 28 H 0.10 2.94 8.01 -2.38 -0.02 2.92 16 29 O -0.57 -20.07 13.40 -148.98 -2.00 -22.06 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.24 8.13 -2.39 -0.02 0.22 16 32 H 0.09 0.31 8.10 -2.39 -0.02 0.29 16 33 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.13 4.42 7.16 -2.91 -0.02 4.40 16 35 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.15 2.21 6.40 -2.91 -0.02 2.20 16 38 H 0.41 10.07 6.60 -92.71 -0.61 9.46 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 1.15 7.30 -2.39 -0.02 1.14 16 43 H 0.03 1.56 7.51 -2.39 -0.02 1.54 16 44 H 0.40 10.27 9.12 -74.06 -0.68 9.59 16 Total: -1.00 -85.98 365.19 0.23 -85.75 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.24 Total: 24.47 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.59 Total: 17.31 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.10 Total: -127.92 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -2.06 Total: -48.43 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -85.98 0.23 -85.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077847562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.898 kcal (2) G-P(sol) polarization free energy of solvation -85.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds