Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36559 * 125.06733 * 2 1 4 4 C 1.34451 * 109.97523 * 179.97438 * 3 2 1 5 5 C 1.46259 * 107.03296 * 0.02562 * 4 3 2 6 6 C 1.39915 * 133.83450 * 179.97438 * 5 4 3 7 7 C 1.36205 * 119.95721 * 179.78992 * 6 5 4 8 8 C 1.40246 * 120.37574 * 0.48892 * 7 6 5 9 9 C 1.47577 * 119.83311 * 179.77080 * 8 7 6 10 10 O 1.21583 * 120.00073 * 179.72437 * 9 8 7 11 11 N 1.34777 * 119.99657 * 359.72129 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72390 * 11 9 8 13 13 H 1.08997 * 110.64575 * 34.57494 * 12 11 9 14 14 C 1.54330 * 110.71995 * 271.43484 * 12 11 9 15 15 N 1.47020 * 107.27017 * 219.44336 * 14 12 11 16 16 C 1.36942 * 125.64728 * 178.97836 * 15 14 12 17 17 H 1.07996 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99917 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47160 * 119.99458 * 20 18 16 23 23 H 1.48501 * 109.46888 * 239.99702 * 20 18 16 24 24 C 1.47422 * 108.70501 * 358.94342 * 15 14 12 25 25 C 1.55117 * 104.94236 * 23.99999 * 24 15 14 26 26 H 1.09000 * 110.93651 * 81.21583 * 25 24 15 27 27 O 1.42904 * 111.16416 * 205.12973 * 25 24 15 28 28 C 1.39287 * 120.33407 * 359.49477 * 8 7 6 29 29 C 1.37822 * 125.06833 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46768 * 270.02089 * 1 2 3 31 31 H 1.08998 * 109.46984 * 30.02418 * 1 2 3 32 32 H 1.08995 * 109.46780 * 150.02262 * 1 2 3 33 33 H 1.08006 * 125.01466 * 359.96030 * 3 2 1 34 34 H 1.07998 * 126.48311 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.02583 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.81160 * 180.25924 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.88505 * 338.85997 * 14 12 11 39 39 H 1.09000 * 109.87946 * 99.87271 * 14 12 11 40 40 H 0.97000 * 120.00380 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.36891 * 142.96707 * 24 15 14 42 42 H 1.09011 * 110.36727 * 265.28734 * 24 15 14 43 43 H 0.96702 * 114.00453 * 292.17554 * 27 25 24 44 44 H 1.08001 * 120.16400 * 180.28018 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2497 1.1177 0.0000 4 6 3.5478 0.7676 0.0006 5 6 3.5974 -0.6941 0.0003 6 6 4.6389 -1.6284 0.0002 7 6 4.3572 -2.9610 0.0043 8 6 3.0267 -3.4046 -0.0016 9 6 2.7352 -4.8513 -0.0022 10 8 1.5829 -5.2393 -0.0023 11 7 3.7464 -5.7424 -0.0027 12 6 3.4570 -7.1785 0.0028 13 1 2.5559 -7.3912 -0.5723 14 6 3.3185 -7.7020 1.4480 15 7 3.9613 -9.0234 1.4971 16 6 4.0716 -9.8164 2.6080 17 1 3.6656 -9.4834 3.5517 18 6 4.7054 -11.0484 2.5212 19 7 5.1998 -11.4545 1.3709 20 14 4.8566 -12.1299 4.0367 21 1 4.2245 -11.4494 5.1954 22 1 4.1740 -13.4255 3.7904 23 1 6.2919 -12.3742 4.3293 24 6 4.4666 -9.3535 0.1521 25 6 4.6631 -7.9837 -0.5487 26 1 5.6069 -7.5261 -0.2519 27 8 4.5846 -8.1151 -1.9695 28 6 1.9791 -2.4867 -0.0012 29 6 2.2570 -1.1280 0.0005 30 1 -0.3632 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.8817 2.1332 -0.0006 34 1 4.3939 1.4388 0.0003 35 1 5.6655 -1.2932 0.0007 36 1 5.1629 -3.6801 0.0085 37 1 4.6657 -5.4329 -0.0023 38 1 3.8169 -7.0215 2.1382 39 1 2.2643 -7.7901 1.7109 40 1 5.6424 -12.3155 1.3101 41 1 5.4162 -9.8840 0.2233 42 1 3.7360 -9.9530 -0.3911 43 1 5.3172 -8.6112 -2.3598 44 1 0.9556 -2.8314 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077945775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = 17.704487 kcal Electronic energy + Delta-G solvation = -27271.847745 eV Core-core repulsion = 23383.929265 eV Total energy + Delta-G solvation = -3887.918480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56803 -39.74381 -37.91642 -36.72638 -35.05900 -34.05764 -33.12095 -31.75906 -30.57023 -29.62580 -28.21227 -26.90431 -26.54572 -24.63648 -23.30759 -22.37181 -20.80499 -20.63137 -20.24738 -19.80651 -17.84824 -17.18083 -16.95245 -16.71778 -16.16559 -15.68315 -15.63694 -15.07561 -14.60569 -14.48446 -14.21044 -13.98799 -13.75678 -13.56018 -13.36536 -13.16024 -13.09873 -12.86346 -12.69114 -12.31998 -12.09226 -11.87433 -11.48929 -11.42736 -11.24325 -11.14479 -10.96889 -10.84593 -10.15481 -9.92450 -9.88364 -9.83077 -9.70299 -9.26108 -8.77084 -8.71492 -8.40662 -7.88369 -6.90829 -5.71502 -3.13750 0.66535 1.31648 2.34440 2.48136 3.09036 3.35520 3.38622 3.44158 3.46689 3.90421 4.38087 4.40369 4.46377 4.50388 4.63411 4.74456 4.82158 4.94043 5.08895 5.11232 5.24689 5.29943 5.36640 5.42777 5.47193 5.64862 5.66474 5.68101 5.82245 5.87855 6.10867 6.20075 6.21571 6.32494 6.46994 6.49597 6.51886 6.70111 6.92489 6.96795 6.97592 7.33066 7.54165 7.70088 7.77543 8.11819 8.26436 8.44234 9.14897 9.75239 10.37822 11.32863 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002400 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.528813 B =11663.318058 C =11934.109711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.485 5.485 3 C 0.057 3.943 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.079 4.079 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.560 3.440 10 O -0.541 6.541 11 N -0.708 5.708 12 C 0.142 3.858 13 H 0.101 0.899 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.220 4.220 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.565 6.565 28 C -0.060 4.060 29 C 0.082 3.918 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.398 0.602 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.253 0.747 41 H 0.113 0.887 42 H 0.025 0.975 43 H 0.377 0.623 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 25.207 -5.538 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.069 4.069 4 C -0.235 4.235 5 C -0.094 4.094 6 C -0.097 4.097 7 C -0.133 4.133 8 C -0.116 4.116 9 C 0.347 3.653 10 O -0.419 6.419 11 N -0.359 5.359 12 C 0.037 3.963 13 H 0.119 0.881 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.080 0.920 27 O -0.370 6.370 28 C -0.081 4.081 29 C -0.023 4.023 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.234 0.766 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.043 0.957 43 H 0.224 0.776 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.874 25.075 -5.380 25.937 hybrid contribution 0.904 -0.685 0.709 1.338 sum -2.970 24.390 -4.671 25.011 Atomic orbital electron populations 1.22000 0.76910 1.04422 1.03279 1.43815 1.06057 1.04247 1.62688 1.21857 0.90570 0.91099 1.03406 1.21703 0.95998 0.92791 1.13008 1.19378 0.92033 0.93703 1.04299 1.20158 0.98103 0.91598 0.99872 1.20756 0.95179 0.95910 1.01431 1.19566 0.93465 0.92654 1.05923 1.18112 0.85257 0.85578 0.76356 1.90768 1.20412 1.80628 1.50111 1.45883 1.09100 1.06455 1.74415 1.22028 0.99180 0.77632 0.97434 0.88075 1.21633 0.96981 0.88451 0.92674 1.44299 1.65986 1.15918 1.06586 1.19162 1.30809 0.97295 0.87587 0.90133 1.24806 1.00865 0.97622 0.97425 1.69744 1.43679 1.21072 1.22833 0.85946 0.77356 0.80298 0.81598 1.20453 1.21674 1.21694 1.22582 1.02421 0.90482 0.84094 1.23669 0.96021 0.99152 0.80544 0.92036 1.86420 1.51936 1.78303 1.20302 1.20049 0.99821 0.88421 0.99849 1.18086 0.90264 0.88062 1.05934 0.91047 0.89807 0.89795 0.81375 0.83407 0.85402 0.85494 0.76649 0.95110 0.94803 0.93655 0.86929 0.95675 0.77598 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.02 59.85 0.66 1.10 16 2 N -0.49 -4.44 3.18 -121.85 -0.39 -4.82 16 3 C 0.06 0.43 11.28 -16.78 -0.19 0.24 16 4 C -0.21 -1.86 11.08 -37.70 -0.42 -2.28 16 5 C -0.09 -1.01 6.37 -105.05 -0.67 -1.68 16 6 C -0.08 -0.84 10.03 -39.69 -0.40 -1.24 16 7 C -0.11 -1.31 9.46 -39.56 -0.37 -1.69 16 8 C -0.11 -1.57 5.87 -104.94 -0.62 -2.19 16 9 C 0.56 9.51 7.76 -12.45 -0.10 9.41 16 10 O -0.54 -11.04 16.00 5.29 0.08 -10.95 16 11 N -0.71 -11.47 5.06 -53.06 -0.27 -11.74 16 12 C 0.14 2.77 3.00 -66.10 -0.20 2.58 16 13 H 0.10 2.19 7.62 -51.93 -0.40 1.79 16 14 C 0.13 2.89 7.00 -3.06 -0.02 2.87 16 15 N -0.60 -15.50 3.40 -169.93 -0.58 -16.08 16 16 C -0.22 -6.15 10.27 -15.05 -0.15 -6.31 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 20 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.13 3.12 5.63 -2.42 -0.01 3.10 16 25 C 0.07 1.27 4.06 -24.47 -0.10 1.17 16 26 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 27 O -0.56 -9.83 13.48 -35.23 -0.47 -10.30 16 28 C -0.06 -0.80 9.48 -39.03 -0.37 -1.17 16 29 C 0.08 0.97 6.80 -84.01 -0.57 0.40 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 32 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.17 0.65 8.06 -52.48 -0.42 0.22 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.21 6.36 -52.49 -0.33 0.88 16 37 H 0.40 5.30 6.53 -40.82 -0.27 5.04 16 38 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 41 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 42 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.38 4.96 9.12 45.56 0.42 5.38 16 44 H 0.13 1.75 7.62 -52.49 -0.40 1.35 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -35.19 366.82 -9.23 -44.42 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.04 Total: 9.02 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -3.63 Total: 3.89 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.67 Total: -58.56 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.39 Total: -21.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.19 -9.23 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077945775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.126 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds