Wall clock time and date at job start Tue Mar 31 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.36559 * 125.06733 * 2 1 4 4 C 1.34451 * 109.97523 * 179.97438 * 3 2 1 5 5 C 1.46259 * 107.03296 * 0.02562 * 4 3 2 6 6 C 1.39915 * 133.83450 * 179.97438 * 5 4 3 7 7 C 1.36205 * 119.95721 * 179.78992 * 6 5 4 8 8 C 1.40246 * 120.37574 * 0.48892 * 7 6 5 9 9 C 1.47577 * 119.83311 * 179.77080 * 8 7 6 10 10 O 1.21583 * 120.00073 * 179.72437 * 9 8 7 11 11 N 1.34777 * 119.99657 * 359.72129 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72390 * 11 9 8 13 13 H 1.08997 * 110.64575 * 34.57494 * 12 11 9 14 14 C 1.54330 * 110.71995 * 271.43484 * 12 11 9 15 15 N 1.47020 * 107.27017 * 219.44336 * 14 12 11 16 16 C 1.36942 * 125.64728 * 178.97836 * 15 14 12 17 17 H 1.07996 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99917 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47160 * 119.99458 * 20 18 16 23 23 H 1.48501 * 109.46888 * 239.99702 * 20 18 16 24 24 C 1.47422 * 108.70501 * 358.94342 * 15 14 12 25 25 C 1.55117 * 104.94236 * 23.99999 * 24 15 14 26 26 H 1.09000 * 110.93651 * 81.21583 * 25 24 15 27 27 O 1.42904 * 111.16416 * 205.12973 * 25 24 15 28 28 C 1.39287 * 120.33407 * 359.49477 * 8 7 6 29 29 C 1.37822 * 125.06833 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46768 * 270.02089 * 1 2 3 31 31 H 1.08998 * 109.46984 * 30.02418 * 1 2 3 32 32 H 1.08995 * 109.46780 * 150.02262 * 1 2 3 33 33 H 1.08006 * 125.01466 * 359.96030 * 3 2 1 34 34 H 1.07998 * 126.48311 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.02583 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.81160 * 180.25924 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.88505 * 338.85997 * 14 12 11 39 39 H 1.09000 * 109.87946 * 99.87271 * 14 12 11 40 40 H 0.97000 * 120.00380 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.36891 * 142.96707 * 24 15 14 42 42 H 1.09011 * 110.36727 * 265.28734 * 24 15 14 43 43 H 0.96702 * 114.00453 * 292.17554 * 27 25 24 44 44 H 1.08001 * 120.16400 * 180.28018 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2497 1.1177 0.0000 4 6 3.5478 0.7676 0.0006 5 6 3.5974 -0.6941 0.0003 6 6 4.6389 -1.6284 0.0002 7 6 4.3572 -2.9610 0.0043 8 6 3.0267 -3.4046 -0.0016 9 6 2.7352 -4.8513 -0.0022 10 8 1.5829 -5.2393 -0.0023 11 7 3.7464 -5.7424 -0.0027 12 6 3.4570 -7.1785 0.0028 13 1 2.5559 -7.3912 -0.5723 14 6 3.3185 -7.7020 1.4480 15 7 3.9613 -9.0234 1.4971 16 6 4.0716 -9.8164 2.6080 17 1 3.6656 -9.4834 3.5517 18 6 4.7054 -11.0484 2.5212 19 7 5.1998 -11.4545 1.3709 20 14 4.8566 -12.1299 4.0367 21 1 4.2245 -11.4494 5.1954 22 1 4.1740 -13.4255 3.7904 23 1 6.2919 -12.3742 4.3293 24 6 4.4666 -9.3535 0.1521 25 6 4.6631 -7.9837 -0.5487 26 1 5.6069 -7.5261 -0.2519 27 8 4.5846 -8.1151 -1.9695 28 6 1.9791 -2.4867 -0.0012 29 6 2.2570 -1.1280 0.0005 30 1 -0.3632 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.8817 2.1332 -0.0006 34 1 4.3939 1.4388 0.0003 35 1 5.6655 -1.2932 0.0007 36 1 5.1629 -3.6801 0.0085 37 1 4.6657 -5.4329 -0.0023 38 1 3.8169 -7.0215 2.1382 39 1 2.2643 -7.7901 1.7109 40 1 5.6424 -12.3155 1.3101 41 1 5.4162 -9.8840 0.2233 42 1 3.7360 -9.9530 -0.3911 43 1 5.3172 -8.6112 -2.3598 44 1 0.9556 -2.8314 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077945775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:18 Heat of formation + Delta-G solvation = -7.595902 kcal Electronic energy + Delta-G solvation = -27272.944853 eV Core-core repulsion = 23383.929265 eV Total energy + Delta-G solvation = -3889.015587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32803 -41.10933 -39.47442 -37.69453 -36.70026 -35.66023 -33.87589 -33.61096 -31.38954 -30.82347 -29.80970 -28.60449 -27.15070 -26.46556 -24.48243 -23.20860 -22.46537 -21.89358 -21.49350 -21.02879 -19.18347 -18.70627 -18.35091 -17.75466 -17.36786 -16.96393 -16.72299 -16.35449 -16.01721 -15.86010 -15.49983 -15.17071 -14.93038 -14.82957 -14.70782 -14.36330 -14.04080 -13.90634 -13.82522 -13.66307 -13.23976 -13.21162 -13.14798 -12.84350 -12.80332 -12.74188 -12.20113 -12.03171 -12.01010 -11.94600 -11.45164 -11.27109 -10.89144 -10.77938 -10.69559 -10.25383 -9.24681 -8.98509 -8.61929 -7.82847 -5.29324 -0.27020 0.46723 1.47215 1.48370 1.57090 1.58912 1.78758 2.02457 2.09409 2.46567 2.93290 3.06464 3.28673 3.54866 3.61780 3.73865 3.86418 3.87850 3.96639 4.03879 4.12150 4.18268 4.27892 4.40452 4.41236 4.50610 4.58419 4.63753 4.69612 4.73178 4.82102 4.91110 5.00254 5.02221 5.29664 5.36862 5.40010 5.43467 5.47850 5.66907 5.72950 5.77425 6.14811 6.20157 6.37548 6.47414 6.87131 7.04046 7.13577 7.67478 8.30067 9.19231 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002400 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.528813 B =11663.318058 C =11934.109711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.489 5.489 3 C 0.071 3.929 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.078 4.078 7 C -0.115 4.115 8 C -0.135 4.135 9 C 0.559 3.441 10 O -0.585 6.585 11 N -0.695 5.695 12 C 0.155 3.845 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.984 3.016 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.134 3.866 25 C 0.092 3.908 26 H 0.090 0.910 27 O -0.567 6.567 28 C -0.069 4.069 29 C 0.058 3.942 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.212 0.788 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.415 0.585 38 H 0.041 0.959 39 H 0.014 0.986 40 H 0.251 0.749 41 H 0.093 0.907 42 H -0.009 1.009 43 H 0.398 0.602 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 28.319 -5.384 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.172 5.172 3 C -0.056 4.056 4 C -0.250 4.250 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.139 4.139 9 C 0.349 3.651 10 O -0.467 6.467 11 N -0.347 5.347 12 C 0.049 3.951 13 H 0.094 0.906 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.211 1.211 24 C 0.008 3.992 25 C 0.031 3.969 26 H 0.108 0.892 27 O -0.375 6.375 28 C -0.091 4.091 29 C -0.048 4.048 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.228 0.772 34 H 0.190 0.810 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.254 0.746 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.009 0.991 43 H 0.248 0.752 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.574 28.223 -5.245 28.821 hybrid contribution 0.422 -1.518 0.628 1.696 sum -2.152 26.705 -4.617 27.186 Atomic orbital electron populations 1.22234 0.75276 1.05575 1.04130 1.44160 1.07275 1.03878 1.61839 1.22612 0.90171 0.92224 1.00560 1.22073 0.97514 0.91680 1.13716 1.19880 0.91878 0.95404 1.03495 1.20494 0.99466 0.91008 0.98639 1.20926 0.94320 0.97009 1.01262 1.19364 0.95031 0.90508 1.09011 1.18630 0.84540 0.86917 0.75035 1.90737 1.22189 1.81531 1.52210 1.45641 1.10068 1.04789 1.74183 1.21575 0.98610 0.79668 0.95245 0.90552 1.21664 0.95566 0.87463 0.94820 1.44547 1.66420 1.16875 1.06751 1.19477 1.31135 0.98189 0.88384 0.90188 1.25644 1.00659 0.98783 1.00345 1.69957 1.43950 1.21169 1.24477 0.84926 0.77307 0.78037 0.78503 1.19409 1.21952 1.21113 1.22414 1.00102 0.92936 0.83723 1.23282 0.96713 0.95812 0.81050 0.89211 1.86394 1.53498 1.78622 1.18991 1.20021 0.99156 0.89532 1.00371 1.18179 0.91567 0.88154 1.06887 0.90347 0.86661 0.90713 0.77183 0.81046 0.82516 0.83608 0.74637 0.94119 0.96798 0.93915 0.88881 0.99094 0.75170 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 11.02 127.77 1.41 2.08 16 2 N -0.49 -7.96 3.18 -539.41 -1.71 -9.68 16 3 C 0.07 0.82 11.28 83.09 0.94 1.76 16 4 C -0.23 -3.26 11.08 23.49 0.26 -3.00 16 5 C -0.10 -2.10 6.37 -20.14 -0.13 -2.22 16 6 C -0.08 -1.49 10.03 22.20 0.22 -1.26 16 7 C -0.12 -2.53 9.46 22.28 0.21 -2.31 16 8 C -0.13 -3.83 5.87 -20.07 -0.12 -3.95 16 9 C 0.56 19.53 7.76 86.71 0.67 20.20 16 10 O -0.59 -25.20 16.00 -3.98 -0.06 -25.27 16 11 N -0.70 -22.43 5.06 -440.04 -2.23 -24.66 16 12 C 0.16 6.17 3.00 46.18 0.14 6.31 16 13 H 0.08 3.45 7.62 -2.39 -0.02 3.43 16 14 C 0.13 6.03 7.00 86.73 0.61 6.64 16 15 N -0.62 -32.80 3.40 -691.55 -2.35 -35.15 16 16 C -0.24 -13.86 10.27 84.03 0.86 -12.99 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 19 N -0.95 -55.19 10.09 21.65 0.22 -54.97 16 20 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.13 6.61 5.63 86.93 0.49 7.10 16 25 C 0.09 3.46 4.06 32.06 0.13 3.59 16 26 H 0.09 2.93 8.00 -2.39 -0.02 2.92 16 27 O -0.57 -19.16 13.48 -148.98 -2.01 -21.17 16 28 C -0.07 -1.91 9.48 22.63 0.21 -1.69 16 29 C 0.06 1.34 6.80 38.96 0.26 1.60 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.40 8.13 -2.39 -0.02 0.38 16 32 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.21 0.52 8.06 -2.91 -0.02 0.49 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.15 2.47 6.36 -2.91 -0.02 2.45 16 37 H 0.41 10.43 6.53 -92.71 -0.61 9.82 16 38 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 39 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.09 4.97 5.87 -2.39 -0.01 4.96 16 42 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 43 H 0.40 9.82 9.12 -74.06 -0.68 9.15 16 44 H 0.12 3.44 7.62 -2.91 -0.02 3.41 16 Total: -1.00 -79.39 366.82 0.29 -79.09 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.23 Total: 25.45 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 6.64 Total: 18.83 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -6.07 Total: -124.46 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -2.07 Total: -46.44 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.39 0.29 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077945775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.498 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds