Wall clock time and date at job start Tue Mar 31 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35746 * 120.33544 * 2 1 4 4 C 1.40823 * 119.71711 * 179.97438 * 3 2 1 5 5 C 1.34532 * 120.58893 * 359.97169 * 4 3 2 6 6 N 1.37437 * 120.74107 * 0.04815 * 5 4 3 7 7 C 1.35134 * 131.28715 * 179.97438 * 6 5 4 8 8 C 1.38050 * 108.76890 * 179.97438 * 7 6 5 9 9 C 1.47506 * 126.37245 * 180.02562 * 8 7 6 10 10 O 1.21596 * 120.00221 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99483 * 0.02773 * 9 8 7 12 12 C 1.46503 * 119.99472 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.64365 * 34.29958 * 12 11 9 14 14 C 1.54324 * 110.72208 * 271.15523 * 12 11 9 15 15 N 1.47015 * 107.27359 * 219.44664 * 14 12 11 16 16 C 1.36944 * 125.65084 * 178.97467 * 15 14 12 17 17 H 1.08000 * 119.99696 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00017 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47092 * 89.99833 * 20 18 16 22 22 H 1.48499 * 109.46948 * 209.99446 * 20 18 16 23 23 H 1.48494 * 109.46977 * 329.99769 * 20 18 16 24 24 C 1.47428 * 108.70437 * 358.94244 * 15 14 12 25 25 C 1.55120 * 104.94255 * 24.00065 * 24 15 14 26 26 H 1.09008 * 110.93825 * 81.21687 * 25 24 15 27 27 O 1.42893 * 111.16587 * 205.13114 * 25 24 15 28 28 C 1.41195 * 107.25749 * 0.02562 * 8 7 6 29 29 C 1.37942 * 119.80983 * 359.97435 * 6 5 4 30 30 H 1.09000 * 109.46697 * 89.99998 * 1 2 3 31 31 H 1.08995 * 109.47352 * 210.00213 * 1 2 3 32 32 H 1.09001 * 109.46892 * 330.00603 * 1 2 3 33 33 H 1.07993 * 120.13774 * 359.97438 * 3 2 1 34 34 H 1.08009 * 119.70726 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.63496 * 180.02562 * 5 4 3 36 36 H 1.08005 * 125.61043 * 359.74242 * 7 6 5 37 37 H 0.96997 * 120.00432 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.87942 * 338.86464 * 14 12 11 39 39 H 1.08996 * 109.88185 * 99.87009 * 14 12 11 40 40 H 0.97005 * 120.00011 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36801 * 142.96802 * 24 15 14 42 42 H 1.08995 * 110.36319 * 265.29191 * 24 15 14 43 43 H 0.96697 * 114.00366 * 292.17385 * 27 25 24 44 44 H 1.08006 * 126.56665 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1716 0.0000 4 6 3.6007 1.1564 0.0005 5 6 4.2728 -0.0090 0.0016 6 7 3.6004 -1.2077 0.0013 7 6 4.0498 -2.4821 0.0017 8 6 2.9649 -3.3357 0.0016 9 6 3.0117 -4.8100 0.0024 10 8 1.9786 -5.4512 0.0018 11 7 4.1998 -5.4464 0.0041 12 6 4.2464 -6.9107 0.0055 13 1 3.4169 -7.3221 -0.5696 14 6 4.2334 -7.4560 1.4491 15 7 5.1613 -8.5954 1.4937 16 6 5.4519 -9.3453 2.6021 17 1 4.9819 -9.1165 3.5472 18 6 6.3503 -10.3995 2.5110 19 7 6.9226 -10.6787 1.3591 20 14 6.7460 -11.4227 4.0229 21 1 5.7990 -12.5632 4.1104 22 1 8.1346 -11.9391 3.9215 23 1 6.6189 -10.5794 5.2385 24 6 5.7268 -8.7977 0.1473 25 6 5.6038 -7.4173 -0.5496 26 1 6.4185 -6.7569 -0.2522 27 8 5.5552 -7.5592 -1.9707 28 6 1.8019 -2.5350 0.0004 29 6 2.2211 -1.2203 0.0003 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6604 2.1113 -0.0004 34 1 4.1461 2.0887 0.0010 35 1 5.3528 -0.0027 0.0025 36 1 5.0871 -2.7832 -0.0015 37 1 5.0240 -4.9349 0.0043 38 1 4.5642 -6.6813 2.1410 39 1 3.2278 -7.7834 1.7127 40 1 7.5502 -11.4156 1.2954 41 1 6.7725 -9.0972 0.2160 42 1 5.1517 -9.5467 -0.3970 43 1 6.3812 -7.8736 -2.3631 44 1 0.7800 -2.8846 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077995720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:27 Heat of formation + Delta-G solvation = 21.507636 kcal Electronic energy + Delta-G solvation = -27243.940416 eV Core-core repulsion = 23356.186853 eV Total energy + Delta-G solvation = -3887.753563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.44382 -39.46870 -37.76490 -36.78314 -35.05564 -34.36401 -33.96573 -31.78133 -30.61549 -28.95274 -28.17345 -27.20314 -26.90428 -24.70005 -23.48289 -22.22248 -21.71643 -20.64990 -20.10112 -19.64588 -17.99768 -17.25353 -17.02897 -16.66599 -16.18507 -15.77467 -15.50975 -15.38306 -14.72512 -14.44634 -14.40099 -13.96325 -13.76763 -13.58773 -13.53992 -13.17950 -13.03203 -12.83273 -12.39928 -12.27222 -11.99373 -11.88030 -11.79003 -11.47211 -11.39336 -11.23142 -10.97611 -10.82785 -10.36745 -10.18086 -9.91437 -9.84058 -9.69519 -9.25944 -8.83775 -8.70840 -8.59843 -7.58053 -6.90403 -5.71160 -3.13377 0.48747 1.10287 2.06394 2.42436 3.18795 3.38269 3.41543 3.44232 3.46486 3.67987 4.17075 4.38458 4.41747 4.49687 4.63428 4.64761 4.72681 4.89898 5.15691 5.19055 5.25594 5.29078 5.35453 5.43094 5.56113 5.65083 5.65744 5.69309 5.72169 5.83830 5.88965 6.08097 6.10369 6.15761 6.22792 6.52292 6.54514 6.62379 6.72454 6.97208 7.01722 7.33593 7.54302 7.71082 7.81996 8.11746 8.26836 8.52370 9.15233 9.75657 10.38355 11.33124 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002379 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.506411 B =11765.544572 C =11920.744307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.033 3.967 6 N -0.337 5.337 7 C -0.010 4.010 8 C -0.161 4.161 9 C 0.585 3.415 10 O -0.537 6.537 11 N -0.711 5.711 12 C 0.143 3.857 13 H 0.102 0.898 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.061 0.939 27 O -0.565 6.565 28 C -0.131 4.131 29 C 0.024 3.976 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.395 0.605 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.253 0.747 41 H 0.113 0.887 42 H 0.025 0.975 43 H 0.377 0.623 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 25.324 -5.485 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.166 4.166 4 C -0.150 4.150 5 C -0.085 4.085 6 N 0.000 5.000 7 C -0.144 4.144 8 C -0.168 4.168 9 C 0.372 3.628 10 O -0.414 6.414 11 N -0.361 5.361 12 C 0.038 3.962 13 H 0.120 0.880 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.207 4.207 19 N -0.574 5.574 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.369 6.369 28 C -0.156 4.156 29 C -0.080 4.080 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.229 0.771 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.130 0.870 42 H 0.043 0.957 43 H 0.223 0.777 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.330 25.041 -5.324 26.150 hybrid contribution 1.392 -0.448 0.695 1.619 sum -3.938 24.593 -4.630 25.333 Atomic orbital electron populations 1.20749 0.89595 1.03527 1.03002 1.19386 0.96501 0.90104 0.97750 1.20793 0.93671 0.97839 1.04331 1.20681 0.94824 0.97028 1.02486 1.21649 0.98400 0.83186 1.05306 1.41243 1.07190 1.05311 1.46245 1.22141 0.99521 0.80557 1.12164 1.19716 0.93299 0.92807 1.11009 1.17395 0.83739 0.85629 0.76049 1.90779 1.33243 1.67376 1.50032 1.45822 1.07804 1.07443 1.75009 1.22009 0.98678 0.78108 0.97371 0.88049 1.21634 0.94560 0.90809 0.92735 1.44294 1.48366 1.33559 1.06582 1.19115 1.20170 1.07947 0.87649 0.90188 1.24799 0.99655 0.98837 0.97414 1.69738 1.33182 1.31673 1.22786 0.86018 0.77386 0.80167 0.81621 1.21516 1.21634 1.20643 1.22579 1.03015 0.89867 0.84119 1.23667 0.95238 0.99971 0.80501 0.92146 1.86423 1.40472 1.89789 1.20256 1.21088 0.98846 0.88729 1.06908 1.18630 0.81790 0.94957 1.12608 0.90411 0.90659 0.90899 0.85006 0.83772 0.82148 0.80635 0.77078 0.95157 0.94754 0.93623 0.86973 0.95667 0.77654 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.91 36.00 0.36 -0.40 16 2 C -0.04 -0.33 5.91 -104.32 -0.62 -0.95 16 3 C -0.15 -1.09 9.72 -39.50 -0.38 -1.47 16 4 C -0.13 -0.87 9.97 -39.92 -0.40 -1.26 16 5 C 0.03 0.25 10.89 -16.35 -0.18 0.07 16 6 N -0.34 -3.60 2.92 -60.42 -0.18 -3.78 16 7 C -0.01 -0.11 11.09 -16.17 -0.18 -0.29 16 8 C -0.16 -2.28 6.12 -105.07 -0.64 -2.92 16 9 C 0.59 10.06 7.82 -12.48 -0.10 9.97 16 10 O -0.54 -11.28 16.60 5.28 0.09 -11.19 16 11 N -0.71 -11.43 5.11 -53.07 -0.27 -11.70 16 12 C 0.14 2.79 3.00 -66.09 -0.20 2.60 16 13 H 0.10 2.21 7.62 -51.93 -0.40 1.81 16 14 C 0.13 2.89 7.00 -3.07 -0.02 2.87 16 15 N -0.60 -15.51 3.40 -169.94 -0.58 -16.09 16 16 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 20 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.13 3.11 5.63 -2.41 -0.01 3.10 16 25 C 0.07 1.26 4.06 -24.47 -0.10 1.16 16 26 H 0.06 1.04 8.01 -51.92 -0.42 0.63 16 27 O -0.56 -9.80 13.48 -35.23 -0.47 -10.27 16 28 C -0.13 -1.76 10.27 -38.55 -0.40 -2.16 16 29 C 0.02 0.28 6.60 -84.01 -0.55 -0.27 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.18 1.41 7.42 -52.48 -0.39 1.02 16 37 H 0.40 5.10 7.43 -40.82 -0.30 4.79 16 38 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 4.93 9.12 45.56 0.42 5.34 16 44 H 0.15 1.98 7.93 -52.48 -0.42 1.56 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -35.38 368.15 -9.13 -44.50 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.13 Total: 8.64 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.67 Total: 3.30 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.46 Total: -57.48 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.39 Total: -21.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.38 -9.13 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077995720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.012 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds