Wall clock time and date at job start Tue Mar 31 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35746 * 120.33544 * 2 1 4 4 C 1.40823 * 119.71711 * 179.97438 * 3 2 1 5 5 C 1.34532 * 120.58893 * 359.97169 * 4 3 2 6 6 N 1.37437 * 120.74107 * 0.04815 * 5 4 3 7 7 C 1.35134 * 131.28715 * 179.97438 * 6 5 4 8 8 C 1.38050 * 108.76890 * 179.97438 * 7 6 5 9 9 C 1.47506 * 126.37245 * 180.02562 * 8 7 6 10 10 O 1.21596 * 120.00221 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99483 * 0.02773 * 9 8 7 12 12 C 1.46503 * 119.99472 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.64365 * 34.29958 * 12 11 9 14 14 C 1.54324 * 110.72208 * 271.15523 * 12 11 9 15 15 N 1.47015 * 107.27359 * 219.44664 * 14 12 11 16 16 C 1.36944 * 125.65084 * 178.97467 * 15 14 12 17 17 H 1.08000 * 119.99696 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00017 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47092 * 89.99833 * 20 18 16 22 22 H 1.48499 * 109.46948 * 209.99446 * 20 18 16 23 23 H 1.48494 * 109.46977 * 329.99769 * 20 18 16 24 24 C 1.47428 * 108.70437 * 358.94244 * 15 14 12 25 25 C 1.55120 * 104.94255 * 24.00065 * 24 15 14 26 26 H 1.09008 * 110.93825 * 81.21687 * 25 24 15 27 27 O 1.42893 * 111.16587 * 205.13114 * 25 24 15 28 28 C 1.41195 * 107.25749 * 0.02562 * 8 7 6 29 29 C 1.37942 * 119.80983 * 359.97435 * 6 5 4 30 30 H 1.09000 * 109.46697 * 89.99998 * 1 2 3 31 31 H 1.08995 * 109.47352 * 210.00213 * 1 2 3 32 32 H 1.09001 * 109.46892 * 330.00603 * 1 2 3 33 33 H 1.07993 * 120.13774 * 359.97438 * 3 2 1 34 34 H 1.08009 * 119.70726 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.63496 * 180.02562 * 5 4 3 36 36 H 1.08005 * 125.61043 * 359.74242 * 7 6 5 37 37 H 0.96997 * 120.00432 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.87942 * 338.86464 * 14 12 11 39 39 H 1.08996 * 109.88185 * 99.87009 * 14 12 11 40 40 H 0.97005 * 120.00011 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36801 * 142.96802 * 24 15 14 42 42 H 1.08995 * 110.36319 * 265.29191 * 24 15 14 43 43 H 0.96697 * 114.00366 * 292.17385 * 27 25 24 44 44 H 1.08006 * 126.56665 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1716 0.0000 4 6 3.6007 1.1564 0.0005 5 6 4.2728 -0.0090 0.0016 6 7 3.6004 -1.2077 0.0013 7 6 4.0498 -2.4821 0.0017 8 6 2.9649 -3.3357 0.0016 9 6 3.0117 -4.8100 0.0024 10 8 1.9786 -5.4512 0.0018 11 7 4.1998 -5.4464 0.0041 12 6 4.2464 -6.9107 0.0055 13 1 3.4169 -7.3221 -0.5696 14 6 4.2334 -7.4560 1.4491 15 7 5.1613 -8.5954 1.4937 16 6 5.4519 -9.3453 2.6021 17 1 4.9819 -9.1165 3.5472 18 6 6.3503 -10.3995 2.5110 19 7 6.9226 -10.6787 1.3591 20 14 6.7460 -11.4227 4.0229 21 1 5.7990 -12.5632 4.1104 22 1 8.1346 -11.9391 3.9215 23 1 6.6189 -10.5794 5.2385 24 6 5.7268 -8.7977 0.1473 25 6 5.6038 -7.4173 -0.5496 26 1 6.4185 -6.7569 -0.2522 27 8 5.5552 -7.5592 -1.9707 28 6 1.8019 -2.5350 0.0004 29 6 2.2211 -1.2203 0.0003 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6604 2.1113 -0.0004 34 1 4.1461 2.0887 0.0010 35 1 5.3528 -0.0027 0.0025 36 1 5.0871 -2.7832 -0.0015 37 1 5.0240 -4.9349 0.0043 38 1 4.5642 -6.6813 2.1410 39 1 3.2278 -7.7834 1.7127 40 1 7.5502 -11.4156 1.2954 41 1 6.7725 -9.0972 0.2160 42 1 5.1517 -9.5467 -0.3970 43 1 6.3812 -7.8736 -2.3631 44 1 0.7800 -2.8846 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077995720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:25 Heat of formation + Delta-G solvation = -3.772788 kcal Electronic energy + Delta-G solvation = -27245.036657 eV Core-core repulsion = 23356.186853 eV Total energy + Delta-G solvation = -3888.849804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.23445 -40.91309 -39.31701 -37.55431 -36.69525 -35.59381 -35.02931 -33.66622 -31.53601 -30.27913 -29.48265 -28.60828 -27.78279 -26.49773 -24.66896 -22.97178 -22.63909 -22.33888 -21.71549 -20.90488 -19.15420 -18.69452 -18.49310 -17.85038 -17.30894 -16.87698 -16.60905 -16.52322 -16.16650 -15.87670 -15.50699 -15.30593 -15.02029 -14.85201 -14.68235 -14.21676 -14.13443 -14.02769 -13.74661 -13.67275 -13.22206 -13.18077 -13.10267 -12.83901 -12.73145 -12.56949 -12.34099 -12.06991 -12.03655 -11.93225 -11.44147 -11.31598 -11.10179 -10.89681 -10.76991 -10.24332 -9.55918 -8.97977 -8.30925 -7.82372 -5.28851 -0.19859 0.36727 1.06210 1.47148 1.49456 1.57996 1.67952 2.09004 2.44008 2.48227 2.55328 3.07715 3.29021 3.49514 3.61801 3.71366 3.81201 3.89975 4.01263 4.05596 4.10917 4.16069 4.20699 4.38624 4.43905 4.49288 4.59884 4.75176 4.79000 4.82902 4.84359 4.90444 4.98553 5.14311 5.25057 5.33857 5.37596 5.43635 5.44347 5.47844 5.64871 5.67489 5.88601 6.20657 6.29981 6.54977 6.87973 7.04551 7.21792 7.68056 8.30701 9.19457 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002379 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.506411 B =11765.544572 C =11920.744307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.126 4.126 5 C 0.018 3.982 6 N -0.339 5.339 7 C 0.002 3.998 8 C -0.192 4.192 9 C 0.585 3.415 10 O -0.587 6.587 11 N -0.695 5.695 12 C 0.156 3.844 13 H 0.074 0.926 14 C 0.132 3.868 15 N -0.618 5.618 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.061 4.061 19 N -0.946 5.946 20 Si 0.984 3.016 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.269 1.269 24 C 0.134 3.866 25 C 0.093 3.907 26 H 0.092 0.908 27 O -0.568 6.568 28 C -0.168 4.168 29 C 0.023 3.977 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.210 0.790 37 H 0.414 0.586 38 H 0.041 0.959 39 H 0.012 0.988 40 H 0.251 0.749 41 H 0.094 0.906 42 H -0.010 1.010 43 H 0.398 0.602 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 29.055 -5.313 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.151 4.151 4 C -0.145 4.145 5 C -0.098 4.098 6 N -0.001 5.001 7 C -0.132 4.132 8 C -0.200 4.200 9 C 0.375 3.625 10 O -0.468 6.468 11 N -0.347 5.347 12 C 0.050 3.950 13 H 0.093 0.907 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.194 1.194 24 C 0.008 3.992 25 C 0.033 3.967 26 H 0.109 0.891 27 O -0.375 6.375 28 C -0.192 4.192 29 C -0.083 4.083 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.200 0.800 35 H 0.213 0.787 36 H 0.227 0.773 37 H 0.252 0.748 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.008 0.992 43 H 0.248 0.752 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.402 28.822 -5.171 29.479 hybrid contribution 0.775 -1.430 0.607 1.737 sum -2.626 27.391 -4.564 27.893 Atomic orbital electron populations 1.20768 0.88619 1.03889 1.03399 1.19682 0.97552 0.89881 0.99773 1.21291 0.94485 0.98210 1.01152 1.21247 0.94672 0.98236 1.00334 1.22406 1.00193 0.82200 1.05048 1.41476 1.06974 1.06147 1.45518 1.22447 0.99979 0.80371 1.10419 1.19444 0.95045 0.91029 1.14472 1.17880 0.83037 0.86965 0.74662 1.90743 1.34937 1.68729 1.52413 1.45543 1.08629 1.05835 1.74644 1.21549 0.98218 0.80110 0.95149 0.90743 1.21662 0.92758 0.90165 0.94921 1.44545 1.49103 1.34182 1.06763 1.19444 1.20531 1.08847 0.88463 0.90214 1.25636 0.99569 0.99865 1.00328 1.69953 1.33347 1.31835 1.24418 0.84998 0.76846 0.78328 0.78641 1.21679 1.21319 1.19396 1.22419 1.00879 0.92201 0.83717 1.23275 0.95439 0.97033 0.80987 0.89085 1.86397 1.42403 1.89760 1.18968 1.21075 0.98440 0.90072 1.09567 1.18862 0.82786 0.95009 1.11629 0.90008 0.92038 0.88791 0.82134 0.79972 0.78736 0.77325 0.74792 0.94074 0.96951 0.93918 0.88868 0.99192 0.75200 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.91 71.24 0.71 -0.71 16 2 C -0.07 -1.14 5.91 -19.67 -0.12 -1.26 16 3 C -0.13 -1.45 9.72 22.32 0.22 -1.24 16 4 C -0.13 -1.07 9.97 22.05 0.22 -0.85 16 5 C 0.02 0.21 10.89 82.97 0.90 1.11 16 6 N -0.34 -6.47 2.92 -345.08 -1.01 -7.48 16 7 C 0.00 0.04 11.09 84.14 0.93 0.97 16 8 C -0.19 -5.55 6.12 -20.15 -0.12 -5.68 16 9 C 0.59 20.84 7.82 86.69 0.68 21.52 16 10 O -0.59 -26.36 16.60 -4.02 -0.07 -26.42 16 11 N -0.70 -22.18 5.11 -440.08 -2.25 -24.43 16 12 C 0.16 6.20 3.00 46.18 0.14 6.34 16 13 H 0.07 3.40 7.62 -2.39 -0.02 3.38 16 14 C 0.13 6.05 7.00 86.73 0.61 6.66 16 15 N -0.62 -32.81 3.40 -691.58 -2.35 -35.15 16 16 C -0.24 -13.92 10.27 84.03 0.86 -13.05 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 19 N -0.95 -55.13 10.09 21.65 0.22 -54.91 16 20 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 6.57 5.63 86.93 0.49 7.06 16 25 C 0.09 3.47 4.06 32.06 0.13 3.60 16 26 H 0.09 2.90 8.01 -2.38 -0.02 2.89 16 27 O -0.57 -19.03 13.48 -148.98 -2.01 -21.04 16 28 C -0.17 -4.75 10.27 22.94 0.24 -4.51 16 29 C 0.02 0.51 6.60 38.90 0.26 0.77 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.94 7.70 -2.39 -0.02 0.92 16 32 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.21 2.60 7.42 -2.91 -0.02 2.58 16 37 H 0.41 9.85 7.43 -92.71 -0.69 9.16 16 38 H 0.04 1.80 8.03 -2.38 -0.02 1.78 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 41 H 0.09 4.96 5.87 -2.39 -0.01 4.94 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.40 9.69 9.12 -74.06 -0.68 9.01 16 44 H 0.14 4.11 7.93 -2.91 -0.02 4.09 16 Total: -1.00 -81.31 368.15 0.85 -80.45 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.32 Total: 23.76 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.60 Total: 17.76 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.38 Total: -121.97 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -2.07 Total: -47.46 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -81.31 0.85 -80.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077995720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.681 kcal (2) G-P(sol) polarization free energy of solvation -81.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds