Wall clock time and date at job start Tue Mar 31 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38752 * 119.85027 * 2 1 4 4 C 1.37769 * 120.63286 * 179.97438 * 3 2 1 5 5 C 1.39119 * 119.93093 * 0.26317 * 4 3 2 6 6 N 1.37964 * 133.18933 * 180.41185 * 5 4 3 7 7 H 0.97005 * 124.78481 * 359.33096 * 6 5 4 8 8 C 1.35472 * 110.42760 * 179.56110 * 6 5 4 9 9 C 1.36369 * 109.76944 * 359.76341 * 8 6 5 10 10 C 1.46913 * 126.76731 * 179.97438 * 9 8 6 11 11 O 1.21670 * 119.99866 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99887 * 0.04544 * 10 9 8 13 13 C 1.46505 * 119.99729 * 180.02562 * 12 10 9 14 14 H 1.08996 * 110.64239 * 36.68669 * 13 12 10 15 15 C 1.54325 * 110.71821 * 273.54482 * 13 12 10 16 16 N 1.47018 * 107.27199 * 219.44669 * 15 13 12 17 17 C 1.36934 * 125.64937 * 178.90214 * 16 15 13 18 18 H 1.08006 * 120.00089 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00000 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00250 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47226 * 120.00266 * 21 19 17 24 24 H 1.48500 * 109.46803 * 240.00201 * 21 19 17 25 25 C 1.47428 * 108.70208 * 358.93831 * 16 15 13 26 26 C 1.54906 * 104.83046 * 24.12974 * 25 16 15 27 27 H 1.09003 * 111.00452 * 81.07166 * 26 25 16 28 28 O 1.42899 * 111.00114 * 204.91272 * 26 25 16 29 29 C 1.40395 * 119.36092 * 359.51874 * 5 4 3 30 30 C 1.37759 * 119.84887 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.47213 * 89.99467 * 1 2 3 32 32 H 1.08995 * 109.47032 * 209.99646 * 1 2 3 33 33 H 1.09001 * 109.46966 * 329.99919 * 1 2 3 34 34 H 1.07997 * 119.68027 * 0.03185 * 3 2 1 35 35 H 1.08002 * 120.03033 * 179.97438 * 4 3 2 36 36 H 1.08000 * 125.11463 * 179.74531 * 8 6 5 37 37 H 0.96999 * 120.00424 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.88074 * 338.85904 * 15 13 12 39 39 H 1.08994 * 109.88650 * 99.87212 * 15 13 12 40 40 H 0.97004 * 119.99894 * 179.97438 * 20 19 17 41 41 H 1.08997 * 110.36682 * 142.97100 * 25 16 15 42 42 H 1.09004 * 110.36317 * 265.18037 * 25 16 15 43 43 H 0.96697 * 114.00565 * 292.19948 * 28 26 25 44 44 H 1.08001 * 120.16004 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2034 0.0000 4 6 3.5752 1.2223 0.0005 5 6 4.2858 0.0262 -0.0045 6 7 5.6328 -0.2719 0.0019 7 1 6.3453 0.3864 0.0025 8 6 5.8202 -1.6136 0.0021 9 6 4.6130 -2.2479 0.0011 10 6 4.3820 -3.6987 0.0005 11 8 3.2457 -4.1338 -0.0008 12 7 5.4286 -4.5477 0.0016 13 6 5.1982 -5.9945 0.0004 14 1 4.3310 -6.2450 -0.6106 15 6 5.0219 -6.5205 1.4405 16 7 5.7156 -7.8143 1.5207 17 6 5.8138 -8.5993 2.6383 18 1 5.3578 -8.2804 3.5640 19 6 6.4994 -9.8049 2.5816 20 7 7.0556 -10.1934 1.4537 21 14 6.6327 -10.8762 4.1062 22 1 5.9278 -10.2192 5.2360 23 1 6.0133 -12.1988 3.8376 24 1 8.0637 -11.0619 4.4571 25 6 6.2889 -8.1260 0.1986 26 6 6.4595 -6.7509 -0.4938 27 1 7.3698 -6.2543 -0.1575 28 8 6.4496 -6.8889 -1.9161 29 6 3.5854 -1.1906 0.0003 30 6 2.1927 -1.1948 -0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6500 2.1343 0.0005 35 1 4.1029 2.1646 0.0001 36 1 6.7810 -2.1066 0.0025 37 1 6.3345 -4.2009 0.0026 38 1 5.4633 -5.8188 2.1481 39 1 3.9624 -6.6512 1.6603 40 1 7.5350 -11.0358 1.4142 41 1 7.2556 -8.6170 0.3106 42 1 5.6071 -8.7575 -0.3710 43 1 7.2185 -7.3554 -2.2714 44 1 1.6528 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078239019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:54 Heat of formation + Delta-G solvation = 1.776667 kcal Electronic energy + Delta-G solvation = -27362.580322 eV Core-core repulsion = 23473.971160 eV Total energy + Delta-G solvation = -3888.609162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58214 -39.29668 -37.67322 -37.46171 -35.05318 -33.94713 -32.37929 -31.67852 -31.49467 -29.38732 -28.15640 -26.87067 -26.56424 -24.56052 -22.95278 -22.79130 -21.24992 -20.65625 -20.04018 -19.43976 -18.34521 -17.05606 -16.99211 -16.41010 -16.09918 -15.56099 -15.21627 -15.04802 -14.65361 -14.40810 -14.23157 -13.87955 -13.76654 -13.60727 -13.47640 -13.14531 -12.87672 -12.81683 -12.27406 -12.25968 -11.88594 -11.72097 -11.46784 -11.39256 -11.24144 -11.07281 -10.96185 -10.84638 -10.14883 -9.91307 -9.82755 -9.75668 -9.68796 -9.24262 -8.71485 -8.70411 -8.34665 -7.87093 -6.90201 -5.71351 -3.13329 0.85439 1.38283 1.96442 2.76709 3.37599 3.42502 3.44928 3.47630 3.48651 3.87123 4.41278 4.45084 4.55290 4.63632 4.80867 4.83266 4.98584 5.15238 5.26915 5.34102 5.42701 5.44827 5.50172 5.53712 5.63101 5.66350 5.72489 5.87368 5.89558 5.98524 6.14036 6.18927 6.23397 6.37658 6.51815 6.56097 6.59672 6.74066 6.94787 6.99634 7.15663 7.33479 7.54725 7.71420 7.84895 8.11190 8.26694 8.57969 9.15292 9.75739 10.38433 11.33048 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.002550 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.292620 B =10976.079541 C =11418.747884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 C -0.099 4.099 4 C -0.126 4.126 5 C 0.080 3.920 6 N -0.580 5.580 7 H 0.419 0.581 8 C 0.105 3.895 9 C -0.219 4.219 10 C 0.587 3.413 11 O -0.540 6.540 12 N -0.714 5.714 13 C 0.145 3.855 14 H 0.100 0.900 15 C 0.130 3.870 16 N -0.601 5.601 17 C -0.220 4.220 18 H 0.081 0.919 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.917 3.083 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.129 3.871 26 C 0.067 3.933 27 H 0.061 0.939 28 O -0.565 6.565 29 C -0.058 4.058 30 C -0.061 4.061 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.179 0.821 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.252 0.748 41 H 0.112 0.888 42 H 0.026 0.974 43 H 0.377 0.623 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 23.690 -5.629 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.147 4.147 5 C -0.025 4.025 6 N -0.182 5.182 7 H 0.256 0.744 8 C -0.027 4.027 9 C -0.230 4.230 10 C 0.375 3.625 11 O -0.418 6.418 12 N -0.364 5.364 13 C 0.041 3.959 14 H 0.118 0.882 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.748 3.252 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.004 3.996 26 C 0.007 3.993 27 H 0.079 0.921 28 O -0.370 6.370 29 C -0.063 4.063 30 C -0.080 4.080 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.196 0.804 37 H 0.227 0.773 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.130 0.870 42 H 0.044 0.956 43 H 0.223 0.777 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.709 23.566 -5.487 24.347 hybrid contribution 1.578 -0.419 0.721 1.784 sum -1.132 23.146 -4.766 23.659 Atomic orbital electron populations 1.20725 0.91029 1.02668 1.02169 1.19731 0.96140 0.92577 1.02809 1.20682 0.92820 0.97584 1.00726 1.19949 0.93808 0.94547 1.06375 1.18241 0.83022 0.95390 1.05882 1.41482 1.06254 1.06796 1.63640 0.74406 1.22102 0.99139 0.82662 0.98834 1.20144 0.92091 0.92688 1.18049 1.17189 0.84902 0.84395 0.76010 1.90772 1.22218 1.78485 1.50308 1.45802 1.08501 1.06557 1.75582 1.21973 0.98773 0.77621 0.97579 0.88211 1.21635 0.96635 0.88708 0.92734 1.44308 1.61734 1.18892 1.07910 1.19166 1.28377 0.99006 0.88225 0.90147 1.24799 1.00592 0.97801 0.97545 1.69749 1.40750 1.22773 1.24114 0.85952 0.77315 0.80275 0.81704 1.20444 1.21665 1.21741 1.22541 1.02160 0.90324 0.84614 1.23631 0.95820 0.99329 0.80520 0.92135 1.86424 1.49220 1.80550 1.20805 1.18729 0.93042 0.90574 1.03938 1.20616 0.91846 0.98284 0.97221 0.91415 0.91419 0.91810 0.85727 0.86184 0.80394 0.77303 0.95205 0.94756 0.93686 0.87020 0.95625 0.77661 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.01 0.36 -0.58 16 2 C -0.11 -1.23 5.88 -104.61 -0.62 -1.85 16 3 C -0.10 -0.93 9.66 -39.56 -0.38 -1.31 16 4 C -0.13 -1.17 10.07 -39.43 -0.40 -1.57 16 5 C 0.08 0.87 7.26 -83.97 -0.61 0.26 16 6 N -0.58 -4.72 5.99 -10.48 -0.06 -4.79 16 7 H 0.42 1.82 8.96 -40.82 -0.37 1.46 16 8 C 0.10 0.99 11.33 -16.62 -0.19 0.80 16 9 C -0.22 -3.03 6.27 -103.31 -0.65 -3.68 16 10 C 0.59 9.97 7.79 -12.75 -0.10 9.88 16 11 O -0.54 -11.23 15.88 5.22 0.08 -11.15 16 12 N -0.71 -11.19 5.12 -53.26 -0.27 -11.46 16 13 C 0.15 2.81 2.97 -66.10 -0.20 2.61 16 14 H 0.10 2.16 7.69 -51.93 -0.40 1.76 16 15 C 0.13 2.89 6.99 -3.07 -0.02 2.86 16 16 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 17 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 18 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 21 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.13 3.08 5.62 -2.53 -0.01 3.07 16 26 C 0.07 1.26 4.04 -24.59 -0.10 1.16 16 27 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 28 O -0.57 -9.66 13.47 -35.23 -0.47 -10.13 16 29 C -0.06 -0.82 6.27 -104.95 -0.66 -1.47 16 30 C -0.06 -0.84 9.49 -39.37 -0.37 -1.22 16 31 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.18 1.01 7.38 -52.49 -0.39 0.62 16 37 H 0.39 4.79 7.40 -40.82 -0.30 4.49 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.38 4.84 9.12 45.56 0.42 5.26 16 44 H 0.13 2.02 7.45 -52.49 -0.39 1.63 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -35.72 366.98 -9.50 -45.22 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.07 Total: 9.51 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.19 Total: 2.25 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.35 Total: -58.15 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.39 Total: -21.28 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.72 -9.50 -45.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078239019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.994 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds