Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99666 * 2 1 4 4 H 1.48497 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47004 * 299.99909 * 3 2 1 6 6 H 1.48501 * 109.47277 * 59.99275 * 3 2 1 7 7 C 1.38810 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.88260 * 23.65086 * 10 9 7 12 12 C 1.54247 * 113.74327 * 252.22220 * 10 9 7 13 13 C 1.53957 * 87.18593 * 270.24926 * 12 10 9 14 14 H 1.09002 * 113.65843 * 220.75180 * 13 12 10 15 15 N 1.46498 * 113.66271 * 89.79491 * 13 12 10 16 16 C 1.34775 * 120.00459 * 106.00906 * 15 13 12 17 17 O 1.21707 * 119.99823 * 359.97438 * 16 15 13 18 18 C 1.46600 * 119.99940 * 179.97438 * 16 15 13 19 19 C 1.41153 * 126.56075 * 359.97438 * 18 16 15 20 20 N 1.30526 * 108.27091 * 179.97438 * 19 18 16 21 21 N 1.39992 * 109.36975 * 359.97438 * 20 19 18 22 22 C 1.38455 * 143.84755 * 179.97438 * 21 20 19 23 23 C 1.33078 * 108.42168 * 179.97438 * 22 21 20 24 24 N 1.38060 * 108.13238 * 0.02562 * 23 22 21 25 25 H 0.97005 * 126.15966 * 179.97438 * 24 23 22 26 26 C 1.35014 * 108.27543 * 359.97438 * 21 20 19 27 27 C 1.52906 * 113.66295 * 154.99641 * 10 9 7 28 28 C 1.52906 * 121.13600 * 215.38118 * 27 10 9 29 29 C 1.53959 * 86.78126 * 100.82249 * 28 27 10 30 30 C 1.52908 * 121.13836 * 323.94761 * 27 10 9 31 31 H 0.96996 * 120.00623 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00584 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57655 * 155.70106 * 12 10 9 34 34 H 1.09003 * 113.67319 * 24.81512 * 12 10 9 35 35 H 0.96999 * 119.99696 * 286.00847 * 15 13 12 36 36 H 1.07992 * 125.86890 * 0.02562 * 19 18 16 37 37 H 1.07996 * 125.79070 * 359.74193 * 22 21 20 38 38 H 1.07992 * 125.93255 * 179.97438 * 23 22 21 39 39 H 1.09000 * 113.66406 * 215.29100 * 28 27 10 40 40 H 1.08997 * 113.66398 * 346.35231 * 28 27 10 41 41 H 1.09000 * 113.57986 * 270.13060 * 29 28 27 42 42 H 1.09000 * 113.64970 * 139.34546 * 29 28 27 43 43 H 1.09002 * 113.66065 * 13.64816 * 30 27 10 44 44 H 1.08992 * 113.66553 * 144.70815 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0668 -3.5638 0.4034 12 6 1.9956 -4.4101 -1.3440 13 6 0.7268 -5.1005 -0.8111 14 1 0.6703 -6.1612 -1.0562 15 7 -0.5096 -4.3778 -1.1198 16 6 -1.3423 -4.8429 -2.0719 17 8 -1.0670 -5.8632 -2.6757 18 6 -2.5798 -4.1199 -2.3803 19 6 -3.0334 -2.9309 -1.7696 20 7 -4.1718 -2.5992 -2.3152 21 7 -4.5098 -3.5416 -3.2937 22 6 -5.4657 -3.8810 -4.2361 23 6 -5.0794 -5.0009 -4.8424 24 7 -3.8734 -5.3915 -4.2956 25 1 -3.3584 -6.1746 -4.5458 26 6 -3.5353 -4.4751 -3.3370 27 6 1.2660 -4.8229 0.5925 28 6 1.9586 -5.9180 1.4043 29 6 1.4406 -5.1938 2.6603 30 6 0.3203 -4.6163 1.7762 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.8306 -5.0931 -1.5004 34 1 1.8120 -3.7618 -2.2008 35 1 -0.7288 -3.5645 -0.6388 36 1 -2.5254 -2.3884 -0.9862 37 1 -6.3729 -3.3323 -4.4414 38 1 -5.6165 -5.5153 -5.6255 39 1 1.5266 -6.9084 1.2610 40 1 3.0446 -5.9106 1.3118 41 1 2.1274 -4.4387 3.0427 42 1 1.0794 -5.8686 3.4364 43 1 0.0977 -3.5690 1.9806 44 1 -0.5721 -5.2408 1.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078795547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = 162.900093 kcal Electronic energy + Delta-G solvation = -28539.882199 eV Core-core repulsion = 24690.552624 eV Total energy + Delta-G solvation = -3849.329575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.02801 -40.45598 -38.58968 -37.67423 -35.12834 -33.53808 -32.72749 -32.00644 -29.87900 -29.55661 -28.40055 -25.38908 -24.64788 -24.07391 -23.20266 -22.44218 -21.90849 -21.00669 -20.41878 -19.86305 -18.46749 -17.30822 -16.97234 -16.21477 -16.15108 -15.86657 -15.32237 -15.09277 -14.90126 -14.51327 -14.30064 -14.13185 -13.88606 -13.59094 -13.13323 -12.95753 -12.81553 -12.57803 -12.38920 -12.04112 -11.82139 -11.44714 -11.27376 -10.89990 -10.84621 -10.76514 -10.63403 -10.49978 -10.13477 -10.00597 -9.74301 -9.64390 -9.37449 -9.30589 -9.11405 -8.84466 -8.36547 -7.54307 -7.01580 -5.83721 -3.11216 1.58952 1.92456 2.05795 2.56311 2.79529 3.42139 3.48497 3.50348 3.68709 3.89024 4.39123 4.54206 4.69242 4.84386 4.86651 5.08364 5.10599 5.22204 5.25108 5.30591 5.40665 5.50835 5.55765 5.69496 5.73606 5.84130 5.92896 5.99084 6.07659 6.08658 6.12972 6.22313 6.38588 6.43702 6.59521 6.62616 6.71334 6.78542 6.87589 6.88442 7.04266 7.06664 7.26340 7.69902 7.81347 8.15569 8.36605 8.81618 9.47336 10.01703 10.35885 11.39434 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004419 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.307797 B = 6334.156784 C = 8264.311643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.192 3.808 11 H 0.065 0.935 12 C -0.187 4.187 13 C 0.143 3.857 14 H 0.088 0.912 15 N -0.694 5.694 16 C 0.606 3.394 17 O -0.582 6.582 18 C -0.332 4.332 19 C 0.140 3.860 20 N -0.299 5.299 21 N -0.311 5.311 22 C 0.004 3.996 23 C 0.020 3.980 24 N -0.575 5.575 25 H 0.442 0.558 26 C 0.317 3.683 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.134 4.134 30 C -0.126 4.126 31 H 0.257 0.743 32 H 0.380 0.620 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.208 0.792 37 H 0.190 0.810 38 H 0.202 0.798 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 -13.207 -5.113 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.079 3.921 11 H 0.083 0.917 12 C -0.229 4.229 13 C 0.037 3.963 14 H 0.106 0.894 15 N -0.345 5.345 16 C 0.396 3.604 17 O -0.464 6.464 18 C -0.352 4.352 19 C -0.044 4.044 20 N -0.121 5.121 21 N -0.080 5.080 22 C -0.123 4.123 23 C -0.108 4.108 24 N -0.188 5.188 25 H 0.284 0.716 26 C 0.082 3.918 27 C -0.132 4.132 28 C -0.144 4.144 29 C -0.172 4.172 30 C -0.164 4.164 31 H 0.067 0.933 32 H 0.215 0.785 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.243 0.757 36 H 0.225 0.775 37 H 0.207 0.793 38 H 0.219 0.781 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.899 -12.775 -5.501 16.512 hybrid contribution 0.814 0.466 -0.128 0.947 sum -8.085 -12.309 -5.629 15.766 Atomic orbital electron populations 1.69593 1.05026 1.25869 1.57467 1.24691 0.95550 0.97603 1.02611 0.86119 0.78818 0.84075 0.77147 1.20597 1.21915 1.21870 1.19302 0.91181 0.83720 1.42990 0.90899 1.42098 1.05299 0.99356 1.87054 1.20920 0.94499 0.84707 0.91943 0.91688 1.24334 0.96712 1.00258 1.01604 1.21548 0.83744 0.95779 0.95198 0.89366 1.45385 1.21254 1.28884 1.38947 1.16815 0.81585 0.83167 0.78833 1.90680 1.76762 1.26155 1.52785 1.18505 1.01588 1.05303 1.09843 1.24291 0.91041 0.92373 0.96722 1.77579 1.18753 1.10629 1.05095 1.47146 1.15732 1.18312 1.26794 1.21551 0.97504 0.99118 0.94088 1.22212 0.88356 0.97428 1.02761 1.41520 1.20485 1.24819 1.31942 0.71618 1.19218 0.92640 0.86975 0.92995 1.23559 0.98691 0.98772 0.92207 1.22505 0.99815 0.96658 0.95470 1.22751 0.98934 0.99597 0.95905 1.22571 0.96235 1.02143 0.95419 0.93348 0.78495 0.90648 0.90998 0.75719 0.77512 0.79267 0.78080 0.90405 0.91447 0.90123 0.92292 0.90155 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.18 13.06 55.49 0.72 -25.45 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.35 9.97 -15.06 -0.15 -6.50 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.70 -16.25 4.74 -52.84 -0.25 -16.50 16 10 C 0.19 3.71 4.37 -67.32 -0.29 3.41 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.19 -3.42 7.71 -25.58 -0.20 -3.62 16 13 C 0.14 2.50 4.09 -67.48 -0.28 2.22 16 14 H 0.09 1.55 7.50 -51.93 -0.39 1.16 16 15 N -0.69 -12.62 4.92 -54.70 -0.27 -12.89 16 16 C 0.61 11.41 7.78 -12.89 -0.10 11.31 16 17 O -0.58 -11.85 16.53 5.18 0.09 -11.76 16 18 C -0.33 -5.84 6.15 -104.83 -0.65 -6.49 16 19 C 0.14 2.43 11.48 -17.00 -0.20 2.23 16 20 N -0.30 -5.25 12.61 30.84 0.39 -4.86 16 21 N -0.31 -4.67 4.67 -11.88 -0.06 -4.73 16 22 C 0.00 0.04 11.91 -16.35 -0.19 -0.16 16 23 C 0.02 0.15 11.92 -16.54 -0.20 -0.05 16 24 N -0.58 -6.23 6.24 -11.99 -0.07 -6.31 16 25 H 0.44 4.05 8.96 -40.82 -0.37 3.68 16 26 C 0.32 4.90 8.38 -154.53 -1.29 3.61 16 27 C -0.13 -2.11 0.78 -154.71 -0.12 -2.23 16 28 C -0.11 -1.44 7.84 -26.28 -0.21 -1.65 16 29 C -0.13 -1.86 8.08 -25.74 -0.21 -2.07 16 30 C -0.13 -2.00 7.24 -26.28 -0.19 -2.19 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.38 9.02 5.16 -40.82 -0.21 8.81 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.41 7.60 5.08 -40.82 -0.21 7.39 16 36 H 0.21 3.48 7.49 -52.49 -0.39 3.08 16 37 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.20 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -33.63 365.96 -9.06 -42.69 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -5.73 Total: 19.97 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.36 Total: -2.48 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: 0.46 Total: -70.74 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.63 -9.06 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.589 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds