Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99666 * 2 1 4 4 H 1.48497 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47004 * 299.99909 * 3 2 1 6 6 H 1.48501 * 109.47277 * 59.99275 * 3 2 1 7 7 C 1.38810 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.88260 * 23.65086 * 10 9 7 12 12 C 1.54247 * 113.74327 * 252.22220 * 10 9 7 13 13 C 1.53957 * 87.18593 * 270.24926 * 12 10 9 14 14 H 1.09002 * 113.65843 * 220.75180 * 13 12 10 15 15 N 1.46498 * 113.66271 * 89.79491 * 13 12 10 16 16 C 1.34775 * 120.00459 * 106.00906 * 15 13 12 17 17 O 1.21707 * 119.99823 * 359.97438 * 16 15 13 18 18 C 1.46600 * 119.99940 * 179.97438 * 16 15 13 19 19 C 1.41153 * 126.56075 * 359.97438 * 18 16 15 20 20 N 1.30526 * 108.27091 * 179.97438 * 19 18 16 21 21 N 1.39992 * 109.36975 * 359.97438 * 20 19 18 22 22 C 1.38455 * 143.84755 * 179.97438 * 21 20 19 23 23 C 1.33078 * 108.42168 * 179.97438 * 22 21 20 24 24 N 1.38060 * 108.13238 * 0.02562 * 23 22 21 25 25 H 0.97005 * 126.15966 * 179.97438 * 24 23 22 26 26 C 1.35014 * 108.27543 * 359.97438 * 21 20 19 27 27 C 1.52906 * 113.66295 * 154.99641 * 10 9 7 28 28 C 1.52906 * 121.13600 * 215.38118 * 27 10 9 29 29 C 1.53959 * 86.78126 * 100.82249 * 28 27 10 30 30 C 1.52908 * 121.13836 * 323.94761 * 27 10 9 31 31 H 0.96996 * 120.00623 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00584 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57655 * 155.70106 * 12 10 9 34 34 H 1.09003 * 113.67319 * 24.81512 * 12 10 9 35 35 H 0.96999 * 119.99696 * 286.00847 * 15 13 12 36 36 H 1.07992 * 125.86890 * 0.02562 * 19 18 16 37 37 H 1.07996 * 125.79070 * 359.74193 * 22 21 20 38 38 H 1.07992 * 125.93255 * 179.97438 * 23 22 21 39 39 H 1.09000 * 113.66406 * 215.29100 * 28 27 10 40 40 H 1.08997 * 113.66398 * 346.35231 * 28 27 10 41 41 H 1.09000 * 113.57986 * 270.13060 * 29 28 27 42 42 H 1.09000 * 113.64970 * 139.34546 * 29 28 27 43 43 H 1.09002 * 113.66065 * 13.64816 * 30 27 10 44 44 H 1.08992 * 113.66553 * 144.70815 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0668 -3.5638 0.4034 12 6 1.9956 -4.4101 -1.3440 13 6 0.7268 -5.1005 -0.8111 14 1 0.6703 -6.1612 -1.0562 15 7 -0.5096 -4.3778 -1.1198 16 6 -1.3423 -4.8429 -2.0719 17 8 -1.0670 -5.8632 -2.6757 18 6 -2.5798 -4.1199 -2.3803 19 6 -3.0334 -2.9309 -1.7696 20 7 -4.1718 -2.5992 -2.3152 21 7 -4.5098 -3.5416 -3.2937 22 6 -5.4657 -3.8810 -4.2361 23 6 -5.0794 -5.0009 -4.8424 24 7 -3.8734 -5.3915 -4.2956 25 1 -3.3584 -6.1746 -4.5458 26 6 -3.5353 -4.4751 -3.3370 27 6 1.2660 -4.8229 0.5925 28 6 1.9586 -5.9180 1.4043 29 6 1.4406 -5.1938 2.6603 30 6 0.3203 -4.6163 1.7762 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.8306 -5.0931 -1.5004 34 1 1.8120 -3.7618 -2.2008 35 1 -0.7288 -3.5645 -0.6388 36 1 -2.5254 -2.3884 -0.9862 37 1 -6.3729 -3.3323 -4.4414 38 1 -5.6165 -5.5153 -5.6255 39 1 1.5266 -6.9084 1.2610 40 1 3.0446 -5.9106 1.3118 41 1 2.1274 -4.4387 3.0427 42 1 1.0794 -5.8686 3.4364 43 1 0.0977 -3.5690 1.9806 44 1 -0.5721 -5.2408 1.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078795547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = 140.677499 kcal Electronic energy + Delta-G solvation = -28540.845843 eV Core-core repulsion = 24690.552624 eV Total energy + Delta-G solvation = -3850.293219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.06790 -41.85789 -39.89326 -38.87078 -36.58166 -35.30598 -33.92178 -33.43114 -31.70933 -30.64316 -29.52660 -26.72858 -26.30969 -25.42975 -24.67587 -23.53835 -23.19661 -22.07957 -21.71606 -21.19182 -19.92244 -18.90368 -18.47631 -17.44882 -17.23997 -17.00219 -16.68344 -16.49502 -16.17559 -16.11348 -15.66757 -15.37880 -15.29052 -14.85216 -14.64158 -14.33376 -14.13074 -13.79235 -13.59587 -13.40733 -13.22442 -13.06189 -12.82255 -12.65375 -12.50657 -12.10495 -12.06196 -11.88932 -11.78391 -11.58475 -11.24394 -11.12869 -10.85828 -10.76905 -10.59830 -10.17585 -9.79860 -8.94914 -8.64337 -7.91390 -5.17699 0.65182 0.76318 1.05252 1.44961 1.48861 1.50371 1.58908 1.94315 2.29858 2.49023 2.59092 3.31754 3.41576 3.48062 3.74105 3.79011 3.87050 4.01361 4.07337 4.08758 4.13341 4.24426 4.31404 4.40118 4.49655 4.66708 4.71403 4.74076 4.85710 4.89067 4.92697 4.96466 5.04565 5.17098 5.17690 5.26921 5.30994 5.40069 5.57478 5.64041 5.67265 5.80644 5.83645 6.24912 6.31960 6.60583 6.72785 7.34652 7.39709 8.12386 8.36734 9.31547 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.004419 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.307797 B = 6334.156784 C = 8264.311643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.708 5.708 10 C 0.178 3.822 11 H 0.065 0.935 12 C -0.180 4.180 13 C 0.142 3.858 14 H 0.093 0.907 15 N -0.696 5.696 16 C 0.603 3.397 17 O -0.602 6.602 18 C -0.361 4.361 19 C 0.130 3.870 20 N -0.329 5.329 21 N -0.311 5.311 22 C -0.032 4.032 23 C 0.062 3.938 24 N -0.562 5.562 25 H 0.451 0.549 26 C 0.296 3.704 27 C -0.121 4.121 28 C -0.092 4.092 29 C -0.126 4.126 30 C -0.129 4.129 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.400 0.600 36 H 0.198 0.802 37 H 0.222 0.778 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 -15.561 -6.193 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.067 3.933 11 H 0.083 0.917 12 C -0.221 4.221 13 C 0.037 3.963 14 H 0.111 0.889 15 N -0.345 5.345 16 C 0.394 3.606 17 O -0.486 6.486 18 C -0.381 4.381 19 C -0.053 4.053 20 N -0.151 5.151 21 N -0.081 5.081 22 C -0.156 4.156 23 C -0.064 4.064 24 N -0.175 5.175 25 H 0.294 0.706 26 C 0.057 3.943 27 C -0.123 4.123 28 C -0.130 4.130 29 C -0.164 4.164 30 C -0.167 4.167 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.237 0.763 36 H 0.214 0.786 37 H 0.239 0.761 38 H 0.282 0.718 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.287 -15.169 -6.583 18.965 hybrid contribution 0.848 1.095 0.061 1.386 sum -8.439 -14.075 -6.522 17.659 Atomic orbital electron populations 1.69732 1.06104 1.25887 1.59133 1.25364 0.96320 1.00340 1.03677 0.85207 0.78330 0.80633 0.76356 1.19365 1.22730 1.22140 1.19613 0.91442 0.84961 1.41238 0.90765 1.42193 1.05222 1.00112 1.87234 1.21118 0.94620 0.84263 0.93283 0.91673 1.24275 0.98335 1.00090 0.99444 1.21615 0.83086 0.95663 0.95956 0.88886 1.45442 1.21535 1.28669 1.38824 1.17037 0.81980 0.83013 0.78544 1.90634 1.77425 1.27006 1.53581 1.18458 1.02111 1.05856 1.11672 1.24130 0.91426 0.92746 0.97008 1.77403 1.18909 1.12251 1.06514 1.47373 1.16664 1.17424 1.26675 1.22530 0.98367 1.00839 0.93840 1.23338 0.85929 0.95683 1.01499 1.41790 1.21395 1.23972 1.30329 0.70557 1.19269 0.92546 0.88449 0.94011 1.23451 0.98607 0.98389 0.91865 1.22532 1.00583 0.96376 0.93481 1.22709 0.97529 0.99598 0.96547 1.22571 0.97337 1.00597 0.96158 0.94027 0.79107 0.87863 0.94200 0.76310 0.78563 0.76148 0.71844 0.88268 0.90024 0.91044 0.89865 0.93332 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.14 13.06 21.65 0.28 -55.86 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.24 -13.00 9.97 84.03 0.84 -12.16 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.71 -34.15 4.74 -321.08 -1.52 -35.67 16 10 C 0.18 6.93 4.37 45.38 0.20 7.13 16 11 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 12 C -0.18 -6.58 7.71 31.34 0.24 -6.34 16 13 C 0.14 4.97 4.09 45.28 0.19 5.15 16 14 H 0.09 3.19 7.50 -2.39 -0.02 3.17 16 15 N -0.70 -26.42 4.92 -445.18 -2.19 -28.61 16 16 C 0.60 23.58 7.78 86.42 0.67 24.25 16 17 O -0.60 -24.84 16.53 -4.37 -0.07 -24.91 16 18 C -0.36 -13.30 6.15 -20.00 -0.12 -13.43 16 19 C 0.13 4.88 11.48 85.60 0.98 5.87 16 20 N -0.33 -12.08 12.61 -56.33 -0.71 -12.79 16 21 N -0.31 -9.28 4.67 -191.51 -0.89 -10.17 16 22 C -0.03 -0.55 11.91 82.49 0.98 0.44 16 23 C 0.06 0.65 11.92 82.56 0.98 1.63 16 24 N -0.56 -10.84 6.24 -191.83 -1.20 -12.03 16 25 H 0.45 7.13 8.96 -92.70 -0.83 6.30 16 26 C 0.30 9.09 8.38 133.14 1.12 10.21 16 27 C -0.12 -3.86 0.78 -52.31 -0.04 -3.90 16 28 C -0.09 -2.23 7.84 30.89 0.24 -1.99 16 29 C -0.13 -3.26 8.08 31.23 0.25 -3.01 16 30 C -0.13 -4.08 7.24 30.89 0.22 -3.85 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.37 18.78 5.16 -92.71 -0.48 18.30 16 33 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.40 16.11 5.08 -92.71 -0.47 15.64 16 36 H 0.20 7.46 7.49 -2.91 -0.02 7.44 16 37 H 0.22 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.27 -0.77 8.06 -2.91 -0.02 -0.80 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.85 7.58 -2.39 -0.02 1.83 16 44 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -77.21 365.96 2.23 -74.98 By element: Atomic # 1 Polarization: 50.96 SS G_CDS: -0.71 Total: 50.25 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.22 Total: 6.90 kcal Atomic # 7 Polarization: -148.91 SS G_CDS: -6.23 Total: -155.14 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.91 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.21 2.23 -74.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.655 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds