Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09001 * 113.66564 * 89.73917 * 13 12 10 15 15 N 1.46504 * 113.66645 * 220.79793 * 13 12 10 16 16 C 1.34770 * 119.99827 * 255.49818 * 15 13 12 17 17 O 1.21716 * 120.00139 * 359.97438 * 16 15 13 18 18 C 1.46596 * 120.00270 * 179.97438 * 16 15 13 19 19 C 1.41158 * 126.55951 * 359.68448 * 18 16 15 20 20 N 1.30529 * 108.27262 * 179.81836 * 19 18 16 21 21 N 1.39985 * 109.36936 * 0.44962 * 20 19 18 22 22 C 1.38451 * 143.84991 * 179.71488 * 21 20 19 23 23 C 1.33077 * 108.42331 * 179.97438 * 22 21 20 24 24 N 1.38056 * 108.13431 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.15577 * 179.97438 * 24 23 22 26 26 C 1.35010 * 108.27452 * 359.71171 * 21 20 19 27 27 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 28 28 C 1.52907 * 121.14350 * 94.90830 * 27 10 9 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 10 30 30 C 1.52906 * 121.13637 * 346.33941 * 27 10 9 31 31 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 34 34 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 35 35 H 0.96999 * 120.00156 * 75.48778 * 15 13 12 36 36 H 1.08004 * 125.86074 * 0.02562 * 19 18 16 37 37 H 1.08001 * 125.78711 * 0.03390 * 22 21 20 38 38 H 1.07995 * 125.92875 * 179.97438 * 23 22 21 39 39 H 1.09001 * 113.66043 * 323.84687 * 28 27 10 40 40 H 1.09000 * 113.66310 * 94.90448 * 28 27 10 41 41 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 42 42 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 43 43 H 1.08996 * 113.66552 * 265.09839 * 30 27 10 44 44 H 1.09001 * 113.66060 * 36.16135 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5463 -3.2850 0.4577 12 6 4.7320 -2.8325 -1.3574 13 6 5.9742 -3.3095 -0.5832 14 1 5.9332 -4.3598 -0.2945 15 7 7.2412 -2.9411 -1.2199 16 6 7.9606 -3.8720 -1.8774 17 8 7.5578 -5.0188 -1.9419 18 6 9.2281 -3.5034 -2.5150 19 6 9.8194 -2.2217 -2.5319 20 7 10.9419 -2.2975 -3.1936 21 7 11.1287 -3.6103 -3.6421 22 6 11.9822 -4.4389 -4.3506 23 6 11.4619 -5.6637 -4.3667 24 7 10.2704 -5.6337 -3.6701 25 1 9.6756 -6.3852 -3.5210 26 6 10.0798 -4.3525 -3.2278 27 6 5.5440 -2.3505 0.5274 28 6 5.8777 -2.6362 1.9920 29 6 7.0249 -1.6212 1.8385 30 6 6.2120 -0.9854 0.6960 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0007 33 1 4.2070 -3.6346 -1.8762 34 1 4.9191 -1.9681 -1.9945 35 1 7.5623 -2.0273 -1.1682 36 1 9.4142 -1.3319 -2.0729 37 1 12.9128 -4.1419 -4.8112 38 1 11.8961 -6.5303 -4.8429 39 1 5.1016 -2.3172 2.6878 40 1 6.2172 -3.6562 2.1724 41 1 7.9625 -2.0694 1.5095 42 1 7.1489 -0.9674 2.7017 43 1 6.8186 -0.6866 -0.1588 44 1 5.5299 -0.2026 1.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078795548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = 163.944910 kcal Electronic energy + Delta-G solvation = -27876.763798 eV Core-core repulsion = 24027.479530 eV Total energy + Delta-G solvation = -3849.284268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.39315 -40.66673 -38.92294 -38.03051 -34.99164 -34.08192 -33.05892 -32.36503 -30.44904 -29.94908 -28.78942 -25.62439 -24.88082 -24.22131 -23.15704 -22.81934 -21.74182 -21.30849 -20.45586 -20.37905 -18.67941 -17.95942 -17.13238 -16.61170 -16.51577 -16.29136 -15.77136 -15.26984 -15.17550 -14.66057 -14.55834 -14.36416 -14.15298 -13.80235 -13.53614 -13.02002 -12.93913 -12.80154 -12.52397 -12.17365 -11.90578 -11.77223 -11.54026 -11.27443 -11.08246 -10.90176 -10.85154 -10.76794 -10.25000 -10.08443 -9.93384 -9.85259 -9.63163 -9.50016 -9.44510 -8.83076 -8.69693 -7.91750 -7.23543 -5.76848 -3.11932 1.26099 1.56675 1.68495 2.13467 2.46561 3.35310 3.38371 3.40127 3.45245 3.52206 4.03756 4.36614 4.52458 4.58186 4.66097 4.80594 4.84781 4.88924 4.93004 5.06761 5.16369 5.24499 5.31744 5.38846 5.41322 5.57776 5.70893 5.78212 5.86693 5.93618 6.03376 6.09431 6.14749 6.22494 6.24157 6.29239 6.49825 6.57282 6.60490 6.68069 6.73498 6.85444 7.02698 7.39018 7.76571 8.00792 8.43019 8.46003 9.21123 9.93460 10.13722 11.41555 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002774 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.141806 B =10091.835889 C =10145.408550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.187 3.813 11 H 0.087 0.913 12 C -0.174 4.174 13 C 0.151 3.849 14 H 0.112 0.888 15 N -0.710 5.710 16 C 0.602 3.398 17 O -0.570 6.570 18 C -0.333 4.333 19 C 0.126 3.874 20 N -0.300 5.300 21 N -0.308 5.308 22 C 0.002 3.998 23 C 0.028 3.972 24 N -0.573 5.573 25 H 0.445 0.555 26 C 0.321 3.679 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.139 4.139 30 C -0.114 4.114 31 H 0.259 0.741 32 H 0.363 0.637 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.199 0.801 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.763 -10.142 -5.785 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.372 5.372 10 C 0.075 3.925 11 H 0.105 0.895 12 C -0.216 4.216 13 C 0.046 3.954 14 H 0.130 0.870 15 N -0.360 5.360 16 C 0.392 3.608 17 O -0.451 6.451 18 C -0.353 4.353 19 C -0.058 4.058 20 N -0.122 5.122 21 N -0.078 5.078 22 C -0.124 4.124 23 C -0.100 4.100 24 N -0.185 5.185 25 H 0.287 0.713 26 C 0.084 3.916 27 C -0.129 4.129 28 C -0.159 4.159 29 C -0.176 4.176 30 C -0.152 4.152 31 H 0.069 0.931 32 H 0.197 0.803 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.216 0.784 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 27.280 -10.270 -6.253 29.812 hybrid contribution -0.185 0.937 0.189 0.973 sum 27.095 -9.334 -6.064 29.292 Atomic orbital electron populations 1.69694 1.05103 1.25792 1.57493 1.24676 0.95223 0.97151 1.02076 0.86595 0.79201 0.85164 0.77794 1.21076 1.21762 1.20309 1.19138 0.80633 0.94771 1.42861 0.89080 1.42660 1.03905 1.01875 1.88754 1.21135 0.88590 0.90078 0.92660 0.89542 1.24247 0.95964 1.01056 1.00320 1.22075 0.81799 0.98723 0.92780 0.87041 1.45677 1.22972 1.12223 1.55104 1.16859 0.81997 0.84749 0.77238 1.90736 1.71970 1.19853 1.62544 1.18534 1.02591 0.92436 1.21761 1.24002 0.90775 0.96877 0.94136 1.77489 1.21014 0.90534 1.23141 1.47033 1.15894 1.07572 1.37300 1.21596 0.99676 0.86492 1.04681 1.22301 0.87390 0.99072 1.01265 1.41598 1.21331 1.08426 1.47170 0.71313 1.19217 0.91901 0.83348 0.97098 1.23478 0.98736 0.96284 0.94364 1.22684 0.98090 0.98850 0.96304 1.22834 0.97452 0.98681 0.98666 1.22492 0.98462 0.96220 0.98019 0.93065 0.80335 0.91771 0.90251 0.76861 0.78410 0.79062 0.77790 0.89518 0.91817 0.90665 0.91850 0.92204 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.80 27.73 -169.99 -4.71 17.09 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.24 -6.77 10.46 -15.06 -0.16 -6.93 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.73 -16.75 5.14 -52.99 -0.27 -17.02 16 10 C 0.19 3.51 4.35 -67.48 -0.29 3.22 16 11 H 0.09 1.67 8.12 -51.93 -0.42 1.25 16 12 C -0.17 -2.99 7.68 -25.75 -0.20 -3.19 16 13 C 0.15 2.24 4.08 -67.48 -0.28 1.96 16 14 H 0.11 1.74 7.54 -51.93 -0.39 1.35 16 15 N -0.71 -9.26 5.30 -54.69 -0.29 -9.55 16 16 C 0.60 8.69 7.78 -12.89 -0.10 8.59 16 17 O -0.57 -9.83 16.55 5.17 0.09 -9.74 16 18 C -0.33 -4.21 6.15 -104.83 -0.65 -4.86 16 19 C 0.13 1.38 11.48 -17.00 -0.20 1.18 16 20 N -0.30 -3.67 12.61 30.85 0.39 -3.28 16 21 N -0.31 -3.38 4.67 -11.88 -0.06 -3.44 16 22 C 0.00 0.01 11.91 -16.35 -0.19 -0.18 16 23 C 0.03 0.12 11.92 -16.54 -0.20 -0.07 16 24 N -0.57 -4.46 6.24 -11.99 -0.07 -4.54 16 25 H 0.44 2.88 8.96 -40.82 -0.37 2.51 16 26 C 0.32 3.70 8.38 -154.52 -1.29 2.40 16 27 C -0.13 -1.89 1.06 -154.71 -0.16 -2.05 16 28 C -0.12 -1.66 7.84 -26.29 -0.21 -1.87 16 29 C -0.14 -1.67 8.08 -25.75 -0.21 -1.88 16 30 C -0.11 -1.58 6.77 -26.28 -0.18 -1.75 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.10 3.98 -40.82 -0.16 7.94 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.40 4.33 5.60 -40.82 -0.23 4.11 16 36 H 0.20 1.47 7.49 -52.48 -0.39 1.08 16 37 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.21 -0.10 8.06 -52.49 -0.42 -0.52 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.71 6.42 -51.93 -0.33 0.37 16 44 H 0.09 1.45 6.96 -51.93 -0.36 1.09 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -36.90 362.81 -8.73 -45.63 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.63 Total: 13.19 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -4.40 Total: -5.41 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.47 Total: -66.23 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.90 -8.73 -45.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.571 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds