Wall clock time and date at job start Tue Mar 31 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09001 * 113.66564 * 89.73917 * 13 12 10 15 15 N 1.46504 * 113.66645 * 220.79793 * 13 12 10 16 16 C 1.34770 * 119.99827 * 255.49818 * 15 13 12 17 17 O 1.21716 * 120.00139 * 359.97438 * 16 15 13 18 18 C 1.46596 * 120.00270 * 179.97438 * 16 15 13 19 19 C 1.41158 * 126.55951 * 359.68448 * 18 16 15 20 20 N 1.30529 * 108.27262 * 179.81836 * 19 18 16 21 21 N 1.39985 * 109.36936 * 0.44962 * 20 19 18 22 22 C 1.38451 * 143.84991 * 179.71488 * 21 20 19 23 23 C 1.33077 * 108.42331 * 179.97438 * 22 21 20 24 24 N 1.38056 * 108.13431 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.15577 * 179.97438 * 24 23 22 26 26 C 1.35010 * 108.27452 * 359.71171 * 21 20 19 27 27 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 28 28 C 1.52907 * 121.14350 * 94.90830 * 27 10 9 29 29 C 1.53946 * 86.78434 * 209.37620 * 28 27 10 30 30 C 1.52906 * 121.13637 * 346.33941 * 27 10 9 31 31 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 34 34 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 35 35 H 0.96999 * 120.00156 * 75.48778 * 15 13 12 36 36 H 1.08004 * 125.86074 * 0.02562 * 19 18 16 37 37 H 1.08001 * 125.78711 * 0.03390 * 22 21 20 38 38 H 1.07995 * 125.92875 * 179.97438 * 23 22 21 39 39 H 1.09001 * 113.66043 * 323.84687 * 28 27 10 40 40 H 1.09000 * 113.66310 * 94.90448 * 28 27 10 41 41 H 1.09000 * 113.58131 * 270.13296 * 29 28 27 42 42 H 1.08999 * 113.65580 * 139.34498 * 29 28 27 43 43 H 1.08996 * 113.66552 * 265.09839 * 30 27 10 44 44 H 1.09001 * 113.66060 * 36.16135 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5463 -3.2850 0.4577 12 6 4.7320 -2.8325 -1.3574 13 6 5.9742 -3.3095 -0.5832 14 1 5.9332 -4.3598 -0.2945 15 7 7.2412 -2.9411 -1.2199 16 6 7.9606 -3.8720 -1.8774 17 8 7.5578 -5.0188 -1.9419 18 6 9.2281 -3.5034 -2.5150 19 6 9.8194 -2.2217 -2.5319 20 7 10.9419 -2.2975 -3.1936 21 7 11.1287 -3.6103 -3.6421 22 6 11.9822 -4.4389 -4.3506 23 6 11.4619 -5.6637 -4.3667 24 7 10.2704 -5.6337 -3.6701 25 1 9.6756 -6.3852 -3.5210 26 6 10.0798 -4.3525 -3.2278 27 6 5.5440 -2.3505 0.5274 28 6 5.8777 -2.6362 1.9920 29 6 7.0249 -1.6212 1.8385 30 6 6.2120 -0.9854 0.6960 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0007 33 1 4.2070 -3.6346 -1.8762 34 1 4.9191 -1.9681 -1.9945 35 1 7.5623 -2.0273 -1.1682 36 1 9.4142 -1.3319 -2.0729 37 1 12.9128 -4.1419 -4.8112 38 1 11.8961 -6.5303 -4.8429 39 1 5.1016 -2.3172 2.6878 40 1 6.2172 -3.6562 2.1724 41 1 7.9625 -2.0694 1.5095 42 1 7.1489 -0.9674 2.7017 43 1 6.8186 -0.6866 -0.1588 44 1 5.5299 -0.2026 1.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078795548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:37 Heat of formation + Delta-G solvation = 137.706066 kcal Electronic energy + Delta-G solvation = -27877.901599 eV Core-core repulsion = 24027.479530 eV Total energy + Delta-G solvation = -3850.422070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.05626 -41.91751 -39.91397 -38.86608 -36.46444 -35.55183 -34.15325 -33.58883 -32.30776 -30.64639 -29.57201 -26.78341 -26.46963 -25.42482 -24.45987 -23.47789 -22.91385 -22.04388 -21.78882 -21.38591 -19.99768 -19.56476 -18.32561 -17.60321 -17.24533 -17.22180 -16.68540 -16.60987 -16.28511 -16.09115 -15.50524 -15.45929 -15.36251 -14.77757 -14.63712 -14.29814 -14.13682 -13.94110 -13.65965 -13.58731 -13.38433 -13.15376 -12.87605 -12.81257 -12.39537 -12.20195 -12.05951 -11.97189 -11.83902 -11.58356 -11.34927 -11.20136 -11.07693 -10.78812 -10.65749 -10.17652 -9.88749 -9.22345 -8.64012 -8.00333 -5.32963 0.67157 0.78486 1.05188 1.37547 1.42405 1.46270 1.49276 1.95487 2.33351 2.50024 2.50570 3.29301 3.33988 3.42634 3.54607 3.76271 3.79078 3.87957 3.96325 4.01748 4.08865 4.15123 4.25033 4.38985 4.49308 4.57906 4.65528 4.72615 4.78887 4.79887 4.87484 4.95411 5.02360 5.07856 5.13338 5.16771 5.38763 5.41946 5.47115 5.62434 5.72120 5.80892 5.83570 6.22486 6.24682 6.62521 6.76451 7.10250 7.39523 7.86789 8.07810 9.21491 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002774 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.141806 B =10091.835889 C =10145.408550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.230 4.230 8 H 0.054 0.946 9 N -0.732 5.732 10 C 0.167 3.833 11 H 0.071 0.929 12 C -0.171 4.171 13 C 0.170 3.830 14 H 0.104 0.896 15 N -0.699 5.699 16 C 0.602 3.398 17 O -0.606 6.606 18 C -0.361 4.361 19 C 0.131 3.869 20 N -0.329 5.329 21 N -0.314 5.314 22 C -0.028 4.028 23 C 0.056 3.944 24 N -0.569 5.569 25 H 0.449 0.551 26 C 0.294 3.706 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.121 4.121 30 C -0.118 4.118 31 H 0.257 0.743 32 H 0.369 0.631 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.408 0.592 36 H 0.227 0.773 37 H 0.221 0.779 38 H 0.258 0.742 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.025 -9.976 -6.317 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.169 1.169 7 C -0.361 4.361 8 H 0.072 0.928 9 N -0.374 5.374 10 C 0.057 3.943 11 H 0.089 0.911 12 C -0.213 4.213 13 C 0.064 3.936 14 H 0.122 0.878 15 N -0.349 5.349 16 C 0.393 3.607 17 O -0.490 6.490 18 C -0.381 4.381 19 C -0.052 4.052 20 N -0.150 5.150 21 N -0.084 5.084 22 C -0.152 4.152 23 C -0.071 4.071 24 N -0.181 5.181 25 H 0.292 0.708 26 C 0.056 3.944 27 C -0.117 4.117 28 C -0.163 4.163 29 C -0.158 4.158 30 C -0.156 4.156 31 H 0.066 0.934 32 H 0.204 0.796 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.246 0.754 36 H 0.243 0.757 37 H 0.238 0.762 38 H 0.274 0.726 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 31.633 -10.127 -6.791 33.901 hybrid contribution -1.469 0.644 0.254 1.624 sum 30.163 -9.482 -6.537 32.287 Atomic orbital electron populations 1.69889 1.07241 1.26603 1.59934 1.25514 0.96105 1.01296 1.02828 0.85453 0.78958 0.79558 0.78097 1.20590 1.22460 1.16869 1.19085 0.82825 0.93349 1.40843 0.92790 1.42562 1.02124 1.03645 1.89045 1.21369 0.90357 0.88133 0.94419 0.91119 1.24134 0.97209 1.00649 0.99291 1.21661 0.81757 0.98248 0.91884 0.87797 1.45468 1.21976 1.12794 1.54696 1.17132 0.82469 0.84247 0.76819 1.90708 1.72963 1.21322 1.63963 1.18452 1.02441 0.93772 1.23463 1.24426 0.90124 0.97212 0.93422 1.77371 1.21773 0.91845 1.24050 1.47305 1.16425 1.07269 1.37416 1.22451 1.00802 0.86618 1.05281 1.23277 0.85185 0.99987 0.98650 1.41867 1.22296 1.07402 1.46535 0.70753 1.19464 0.92289 0.84852 0.97815 1.23335 0.95229 0.97770 0.95402 1.22709 0.98736 1.00188 0.94642 1.22764 0.97090 0.97651 0.98289 1.22543 0.98560 0.94652 0.99797 0.93442 0.79623 0.93011 0.90407 0.75365 0.75710 0.76230 0.72581 0.90766 0.90851 0.88891 0.90609 0.89789 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.91 13.97 21.65 0.30 -63.61 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.95 45.15 27.73 68.60 1.90 47.05 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.24 -10.15 6.52 99.48 0.65 -9.51 16 7 C -0.23 -13.16 10.46 84.03 0.88 -12.28 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.73 -33.63 5.14 -321.55 -1.65 -35.29 16 10 C 0.17 6.35 4.35 45.28 0.20 6.55 16 11 H 0.07 2.88 8.12 -2.38 -0.02 2.86 16 12 C -0.17 -5.92 7.68 31.23 0.24 -5.68 16 13 C 0.17 4.90 4.08 45.28 0.18 5.08 16 14 H 0.10 3.22 7.54 -2.39 -0.02 3.20 16 15 N -0.70 -17.06 5.30 -445.17 -2.36 -19.41 16 16 C 0.60 16.82 7.78 86.42 0.67 17.49 16 17 O -0.61 -20.78 16.55 -4.40 -0.07 -20.85 16 18 C -0.36 -8.73 6.15 -20.00 -0.12 -8.85 16 19 C 0.13 2.65 11.48 85.60 0.98 3.64 16 20 N -0.33 -7.55 12.61 -56.32 -0.71 -8.26 16 21 N -0.31 -6.34 4.67 -191.51 -0.89 -7.23 16 22 C -0.03 -0.28 11.91 82.49 0.98 0.70 16 23 C 0.06 0.29 11.92 82.56 0.98 1.27 16 24 N -0.57 -7.63 6.24 -191.83 -1.20 -8.82 16 25 H 0.45 5.03 8.96 -92.71 -0.83 4.20 16 26 C 0.29 6.38 8.38 133.14 1.12 7.50 16 27 C -0.12 -3.29 1.06 -52.31 -0.06 -3.35 16 28 C -0.13 -3.20 7.84 30.88 0.24 -2.95 16 29 C -0.12 -2.49 8.08 31.23 0.25 -2.24 16 30 C -0.12 -2.91 6.77 30.89 0.21 -2.70 16 31 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.37 15.97 3.98 -92.71 -0.37 15.60 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.41 7.82 5.60 -92.71 -0.52 7.30 16 36 H 0.23 2.74 7.49 -2.91 -0.02 2.72 16 37 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.26 -1.68 8.06 -2.91 -0.02 -1.71 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.66 6.42 -2.39 -0.02 1.64 16 44 H 0.07 2.13 6.96 -2.39 -0.02 2.12 16 Total: -1.00 -84.55 362.81 1.84 -82.70 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.71 Total: 33.01 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 7.23 Total: 0.71 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -6.51 Total: -142.62 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -84.55 1.84 -82.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.411 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds