Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00202 * 2 1 4 4 H 1.48494 * 109.47293 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.46712 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.47209 * 149.99451 * 3 2 1 7 7 C 1.38812 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99783 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00658 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88098 * 336.34827 * 10 9 7 12 12 C 1.53951 * 113.74892 * 107.77232 * 10 9 7 13 13 C 1.53947 * 87.29432 * 139.22050 * 12 10 9 14 14 H 1.09004 * 113.74335 * 220.78090 * 13 12 10 15 15 N 1.46500 * 113.66320 * 89.74322 * 13 12 10 16 16 C 1.34774 * 120.00117 * 107.80653 * 15 13 12 17 17 O 1.21704 * 120.00071 * 0.02562 * 16 15 13 18 18 C 1.46599 * 119.99573 * 179.97438 * 16 15 13 19 19 C 1.41156 * 126.56690 * 359.97438 * 18 16 15 20 20 N 1.30525 * 108.27809 * 180.02562 * 19 18 16 21 21 N 1.39991 * 109.36727 * 0.02562 * 20 19 18 22 22 C 1.38447 * 143.85079 * 180.02562 * 21 20 19 23 23 C 1.33074 * 108.42863 * 179.97438 * 22 21 20 24 24 N 1.38066 * 108.13056 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.15835 * 180.25951 * 24 23 22 26 26 C 1.35013 * 108.27489 * 359.97438 * 21 20 19 27 27 C 1.52907 * 113.66442 * 205.00565 * 10 9 7 28 28 C 1.52911 * 121.13798 * 346.24937 * 27 10 9 29 29 C 1.53954 * 86.77943 * 100.82332 * 28 27 10 30 30 C 1.52907 * 121.14040 * 94.81658 * 27 10 9 31 31 H 0.97004 * 120.00020 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99823 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.57671 * 24.61644 * 12 10 9 34 34 H 1.08997 * 113.57625 * 253.82562 * 12 10 9 35 35 H 0.97003 * 119.99700 * 287.81172 * 15 13 12 36 36 H 1.08005 * 125.85787 * 359.97438 * 19 18 16 37 37 H 1.08006 * 125.79013 * 0.02562 * 22 21 20 38 38 H 1.07997 * 125.93406 * 180.02562 * 23 22 21 39 39 H 1.08993 * 113.66059 * 215.29537 * 28 27 10 40 40 H 1.09000 * 113.66148 * 346.35627 * 28 27 10 41 41 H 1.09004 * 113.57619 * 270.13179 * 29 28 27 42 42 H 1.08997 * 113.58067 * 139.33736 * 29 28 27 43 43 H 1.09006 * 113.66225 * 13.64835 * 30 27 10 44 44 H 1.08990 * 113.66567 * 144.70563 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5275 -3.2979 0.4033 12 6 4.7941 -2.7931 -1.3421 13 6 5.9995 -3.2940 -0.5259 14 1 6.9636 -3.0082 -0.9466 15 7 5.9269 -4.7164 -0.1827 16 6 6.7383 -5.6001 -0.7967 17 8 7.5318 -5.2164 -1.6361 18 6 6.6660 -7.0233 -0.4527 19 6 5.8044 -7.6167 0.4949 20 7 6.0399 -8.9004 0.5151 21 7 7.0518 -9.2012 -0.4044 22 6 7.8083 -10.2311 -0.9370 23 6 8.6404 -9.7184 -1.8401 24 7 8.4263 -8.3556 -1.8967 25 1 8.8902 -7.7268 -2.4715 26 6 7.4379 -8.0526 -0.9998 27 6 5.5184 -2.3676 0.5914 28 6 6.1776 -1.0089 0.8308 29 6 5.7877 -1.1776 2.3105 30 6 5.7844 -2.6968 2.0608 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 5.0113 -1.9105 -1.9436 34 1 4.2936 -3.5789 -1.9078 35 1 5.2947 -5.0221 0.4865 36 1 5.0760 -7.0975 1.1001 37 1 7.7350 -11.2741 -0.6662 38 1 9.3579 -10.2722 -2.4274 39 1 7.2540 -1.0087 0.6593 40 1 5.6682 -0.1822 0.3357 41 1 4.8045 -0.7731 2.5512 42 1 6.5617 -0.8517 3.0053 43 1 4.9607 -3.2184 2.5483 44 1 6.7502 -3.1709 2.2350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078795549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = 164.005572 kcal Electronic energy + Delta-G solvation = -27833.575488 eV Core-core repulsion = 23984.293851 eV Total energy + Delta-G solvation = -3849.281638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.36030 -40.61413 -38.92682 -38.02164 -35.03422 -34.07037 -33.02608 -32.14302 -30.45525 -29.91270 -28.69787 -25.55211 -24.87607 -24.16498 -23.21284 -22.78309 -21.73959 -21.30692 -20.81833 -20.02860 -18.50674 -18.12071 -17.05050 -16.58263 -16.48369 -16.15502 -15.66005 -15.27226 -15.06018 -14.72781 -14.50438 -14.37568 -14.18095 -13.73403 -13.50263 -13.07136 -12.91567 -12.62194 -12.48454 -12.15058 -12.03769 -11.87480 -11.48598 -11.19994 -10.96482 -10.91025 -10.85597 -10.65569 -10.22289 -10.05088 -9.88033 -9.73311 -9.62643 -9.46532 -9.43725 -8.85188 -8.66514 -7.88611 -7.25189 -5.77931 -3.12960 1.29207 1.59475 1.71819 2.17574 2.49355 3.36305 3.36867 3.39656 3.45202 3.54240 4.06787 4.39892 4.55626 4.58093 4.73596 4.87137 4.92634 4.94730 5.00609 5.16782 5.19800 5.25643 5.35536 5.40293 5.43369 5.57226 5.69982 5.88268 5.95726 5.98525 6.04021 6.12603 6.21556 6.23429 6.34349 6.38305 6.52669 6.53540 6.66130 6.76030 6.77399 6.85332 7.02551 7.42949 7.78816 7.99111 8.41916 8.48207 9.20020 9.92572 10.12771 11.40359 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.002736 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.139602 B =10232.971820 C =10558.938374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.733 5.733 10 C 0.198 3.802 11 H 0.085 0.915 12 C -0.175 4.175 13 C 0.136 3.864 14 H 0.096 0.904 15 N -0.700 5.700 16 C 0.605 3.395 17 O -0.572 6.572 18 C -0.333 4.333 19 C 0.128 3.872 20 N -0.300 5.300 21 N -0.309 5.309 22 C 0.003 3.997 23 C 0.026 3.974 24 N -0.574 5.574 25 H 0.444 0.556 26 C 0.320 3.680 27 C -0.126 4.126 28 C -0.112 4.112 29 C -0.134 4.134 30 C -0.123 4.123 31 H 0.259 0.741 32 H 0.364 0.636 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.202 0.798 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.180 -18.780 -0.467 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.373 5.373 10 C 0.086 3.914 11 H 0.103 0.897 12 C -0.217 4.217 13 C 0.030 3.970 14 H 0.114 0.886 15 N -0.349 5.349 16 C 0.394 3.606 17 O -0.453 6.453 18 C -0.353 4.353 19 C -0.056 4.056 20 N -0.121 5.121 21 N -0.078 5.078 22 C -0.124 4.124 23 C -0.101 4.101 24 N -0.186 5.186 25 H 0.286 0.714 26 C 0.084 3.916 27 C -0.128 4.128 28 C -0.150 4.150 29 C -0.172 4.172 30 C -0.161 4.161 31 H 0.069 0.931 32 H 0.198 0.802 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.218 0.782 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.084 -19.736 -0.460 28.162 hybrid contribution 0.647 2.049 -0.428 2.191 sum 20.732 -17.687 -0.888 27.265 Atomic orbital electron populations 1.69697 1.05111 1.25815 1.57404 1.24668 0.95203 0.97143 1.01982 0.86627 0.79342 0.85184 0.77869 1.21076 1.21737 1.20114 1.19125 0.80650 0.94722 1.43030 0.89134 1.42743 1.03932 1.02054 1.88585 1.21280 0.87967 0.89973 0.92153 0.89726 1.24235 0.96862 1.00857 0.99780 1.21607 0.99554 0.79092 0.96712 0.88636 1.45240 1.39921 1.06870 1.42830 1.16813 0.79739 0.83784 0.80221 1.90728 1.39685 1.80279 1.34559 1.18485 1.10826 0.92615 1.13363 1.24054 0.96199 0.90492 0.94839 1.77506 1.06376 1.16206 1.12031 1.47047 1.26650 1.06026 1.28096 1.21593 0.96117 0.94524 1.00119 1.22292 1.03257 0.82261 1.02334 1.41593 1.32847 1.08410 1.35731 0.71367 1.19217 0.91279 0.90081 0.91009 1.23611 0.99439 0.96183 0.93600 1.22476 0.99453 0.96116 0.96930 1.22771 1.01989 0.96492 0.95938 1.22622 1.01122 0.96695 0.95656 0.93058 0.80188 0.89829 0.91788 0.76706 0.78161 0.79066 0.77833 0.90417 0.91200 0.89426 0.92293 0.91358 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.84 27.74 -169.99 -4.71 17.12 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.25 -6.73 10.45 -15.06 -0.16 -6.89 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 9 N -0.73 -16.65 5.13 -52.99 -0.27 -16.92 16 10 C 0.20 3.62 4.27 -67.48 -0.29 3.33 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 C -0.18 -3.00 7.69 -25.75 -0.20 -3.20 16 13 C 0.14 2.03 4.12 -67.48 -0.28 1.75 16 14 H 0.10 1.52 7.46 -51.93 -0.39 1.13 16 15 N -0.70 -9.23 5.04 -54.70 -0.28 -9.51 16 16 C 0.60 8.77 7.78 -12.89 -0.10 8.67 16 17 O -0.57 -9.88 16.51 5.18 0.09 -9.80 16 18 C -0.33 -4.24 6.15 -104.83 -0.65 -4.89 16 19 C 0.13 1.42 11.48 -17.00 -0.20 1.23 16 20 N -0.30 -3.73 12.61 30.85 0.39 -3.34 16 21 N -0.31 -3.43 4.67 -11.88 -0.06 -3.49 16 22 C 0.00 0.02 11.91 -16.36 -0.19 -0.18 16 23 C 0.03 0.12 11.92 -16.54 -0.20 -0.08 16 24 N -0.57 -4.51 6.24 -11.98 -0.07 -4.59 16 25 H 0.44 2.89 8.96 -40.82 -0.37 2.53 16 26 C 0.32 3.73 8.38 -154.52 -1.29 2.43 16 27 C -0.13 -1.90 0.92 -154.71 -0.14 -2.04 16 28 C -0.11 -1.67 7.47 -26.28 -0.20 -1.87 16 29 C -0.13 -1.94 8.08 -25.75 -0.21 -2.15 16 30 C -0.12 -1.65 7.49 -26.28 -0.20 -1.85 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.36 8.19 3.78 -40.82 -0.15 8.04 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.42 7.55 -40.82 -0.31 4.11 16 36 H 0.20 1.53 7.49 -52.48 -0.39 1.14 16 37 H 0.19 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.20 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.16 6.42 -51.93 -0.33 0.83 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -36.79 365.49 -8.78 -45.57 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.76 Total: 13.32 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -4.39 Total: -5.64 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.49 Total: -66.08 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.79 -8.78 -45.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.573 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds