Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00202 * 2 1 4 4 H 1.48494 * 109.47293 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.46712 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.47209 * 149.99451 * 3 2 1 7 7 C 1.38812 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99783 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00658 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88098 * 336.34827 * 10 9 7 12 12 C 1.53951 * 113.74892 * 107.77232 * 10 9 7 13 13 C 1.53947 * 87.29432 * 139.22050 * 12 10 9 14 14 H 1.09004 * 113.74335 * 220.78090 * 13 12 10 15 15 N 1.46500 * 113.66320 * 89.74322 * 13 12 10 16 16 C 1.34774 * 120.00117 * 107.80653 * 15 13 12 17 17 O 1.21704 * 120.00071 * 0.02562 * 16 15 13 18 18 C 1.46599 * 119.99573 * 179.97438 * 16 15 13 19 19 C 1.41156 * 126.56690 * 359.97438 * 18 16 15 20 20 N 1.30525 * 108.27809 * 180.02562 * 19 18 16 21 21 N 1.39991 * 109.36727 * 0.02562 * 20 19 18 22 22 C 1.38447 * 143.85079 * 180.02562 * 21 20 19 23 23 C 1.33074 * 108.42863 * 179.97438 * 22 21 20 24 24 N 1.38066 * 108.13056 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.15835 * 180.25951 * 24 23 22 26 26 C 1.35013 * 108.27489 * 359.97438 * 21 20 19 27 27 C 1.52907 * 113.66442 * 205.00565 * 10 9 7 28 28 C 1.52911 * 121.13798 * 346.24937 * 27 10 9 29 29 C 1.53954 * 86.77943 * 100.82332 * 28 27 10 30 30 C 1.52907 * 121.14040 * 94.81658 * 27 10 9 31 31 H 0.97004 * 120.00020 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99823 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.57671 * 24.61644 * 12 10 9 34 34 H 1.08997 * 113.57625 * 253.82562 * 12 10 9 35 35 H 0.97003 * 119.99700 * 287.81172 * 15 13 12 36 36 H 1.08005 * 125.85787 * 359.97438 * 19 18 16 37 37 H 1.08006 * 125.79013 * 0.02562 * 22 21 20 38 38 H 1.07997 * 125.93406 * 180.02562 * 23 22 21 39 39 H 1.08993 * 113.66059 * 215.29537 * 28 27 10 40 40 H 1.09000 * 113.66148 * 346.35627 * 28 27 10 41 41 H 1.09004 * 113.57619 * 270.13179 * 29 28 27 42 42 H 1.08997 * 113.58067 * 139.33736 * 29 28 27 43 43 H 1.09006 * 113.66225 * 13.64835 * 30 27 10 44 44 H 1.08990 * 113.66567 * 144.70563 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5275 -3.2979 0.4033 12 6 4.7941 -2.7931 -1.3421 13 6 5.9995 -3.2940 -0.5259 14 1 6.9636 -3.0082 -0.9466 15 7 5.9269 -4.7164 -0.1827 16 6 6.7383 -5.6001 -0.7967 17 8 7.5318 -5.2164 -1.6361 18 6 6.6660 -7.0233 -0.4527 19 6 5.8044 -7.6167 0.4949 20 7 6.0399 -8.9004 0.5151 21 7 7.0518 -9.2012 -0.4044 22 6 7.8083 -10.2311 -0.9370 23 6 8.6404 -9.7184 -1.8401 24 7 8.4263 -8.3556 -1.8967 25 1 8.8902 -7.7268 -2.4715 26 6 7.4379 -8.0526 -0.9998 27 6 5.5184 -2.3676 0.5914 28 6 6.1776 -1.0089 0.8308 29 6 5.7877 -1.1776 2.3105 30 6 5.7844 -2.6968 2.0608 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 5.0113 -1.9105 -1.9436 34 1 4.2936 -3.5789 -1.9078 35 1 5.2947 -5.0221 0.4865 36 1 5.0760 -7.0975 1.1001 37 1 7.7350 -11.2741 -0.6662 38 1 9.3579 -10.2722 -2.4274 39 1 7.2540 -1.0087 0.6593 40 1 5.6682 -0.1822 0.3357 41 1 4.8045 -0.7731 2.5512 42 1 6.5617 -0.8517 3.0053 43 1 4.9607 -3.2184 2.5483 44 1 6.7502 -3.1709 2.2350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078795549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = 138.082810 kcal Electronic energy + Delta-G solvation = -27834.699584 eV Core-core repulsion = 23984.293851 eV Total energy + Delta-G solvation = -3850.405733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.04920 -41.89081 -39.94803 -38.86816 -36.37786 -35.76147 -33.95614 -33.52317 -32.24692 -30.63401 -29.50797 -26.70897 -26.52873 -25.48527 -24.37067 -23.48773 -23.12106 -22.06606 -21.85296 -21.16493 -20.19848 -19.28632 -18.42140 -17.49778 -17.22833 -17.02387 -16.81802 -16.52521 -16.46433 -15.97810 -15.60140 -15.49182 -15.25377 -14.80351 -14.50051 -14.20025 -14.15879 -14.00628 -13.79889 -13.58002 -13.39327 -13.16406 -12.92250 -12.77959 -12.49172 -12.13467 -12.06073 -11.88108 -11.82715 -11.57702 -11.31425 -11.20934 -10.89743 -10.83593 -10.70057 -10.16886 -9.85780 -9.23161 -8.63403 -8.00322 -5.32010 0.67666 0.79154 1.05971 1.37529 1.40150 1.46974 1.47207 1.96010 2.28986 2.49260 2.50842 3.29701 3.35117 3.49064 3.57997 3.78051 3.80229 3.90901 3.96010 4.05367 4.08918 4.15952 4.23443 4.39676 4.50326 4.61591 4.67128 4.73242 4.77308 4.87797 4.89102 4.92359 5.06794 5.10530 5.13295 5.17986 5.27696 5.44677 5.56007 5.63594 5.73203 5.81542 5.84504 6.23582 6.25212 6.63016 6.76764 7.10516 7.39622 7.87952 8.07057 9.21341 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.002736 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.139602 B =10232.971820 C =10558.938374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.945 3.055 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.226 4.226 8 H 0.060 0.940 9 N -0.735 5.735 10 C 0.183 3.817 11 H 0.081 0.919 12 C -0.174 4.174 13 C 0.154 3.846 14 H 0.093 0.907 15 N -0.693 5.693 16 C 0.605 3.395 17 O -0.605 6.605 18 C -0.360 4.360 19 C 0.131 3.869 20 N -0.330 5.330 21 N -0.314 5.314 22 C -0.028 4.028 23 C 0.057 3.943 24 N -0.568 5.568 25 H 0.450 0.550 26 C 0.295 3.705 27 C -0.116 4.116 28 C -0.113 4.113 29 C -0.135 4.135 30 C -0.111 4.111 31 H 0.256 0.744 32 H 0.367 0.633 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.409 0.591 36 H 0.225 0.775 37 H 0.221 0.779 38 H 0.259 0.741 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.604 -20.102 -0.271 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.773 3.227 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.357 4.357 8 H 0.078 0.922 9 N -0.377 5.377 10 C 0.073 3.927 11 H 0.099 0.901 12 C -0.216 4.216 13 C 0.048 3.952 14 H 0.111 0.889 15 N -0.341 5.341 16 C 0.397 3.603 17 O -0.488 6.488 18 C -0.380 4.380 19 C -0.052 4.052 20 N -0.151 5.151 21 N -0.084 5.084 22 C -0.152 4.152 23 C -0.070 4.070 24 N -0.180 5.180 25 H 0.293 0.707 26 C 0.056 3.944 27 C -0.118 4.118 28 C -0.151 4.151 29 C -0.173 4.173 30 C -0.149 4.149 31 H 0.065 0.935 32 H 0.202 0.798 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.241 0.759 37 H 0.237 0.763 38 H 0.275 0.725 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 23.567 -21.119 -0.251 31.646 hybrid contribution -0.344 2.229 -0.583 2.329 sum 23.223 -18.890 -0.833 29.947 Atomic orbital electron populations 1.69874 1.07067 1.26467 1.60094 1.25427 0.95999 1.00944 1.03064 0.85557 0.78987 0.80248 0.77943 1.20931 1.22386 1.17245 1.19102 0.82720 0.93404 1.40449 0.92232 1.42708 1.02253 1.03870 1.88827 1.21550 0.89326 0.88146 0.93680 0.90085 1.24145 0.97928 1.00515 0.99047 1.21322 0.98148 0.80009 0.95755 0.88908 1.45126 1.40040 1.06049 1.42934 1.17062 0.79155 0.84529 0.79592 1.90695 1.41146 1.80913 1.36081 1.18418 1.12634 0.91912 1.15071 1.24431 0.96088 0.90197 0.94485 1.77383 1.07625 1.16811 1.13317 1.47317 1.26441 1.06987 1.27692 1.22455 0.96379 0.95416 1.00955 1.23279 1.02309 0.80616 1.00818 1.41856 1.31593 1.09977 1.34596 0.70713 1.19442 0.92476 0.90224 0.92223 1.23379 0.96433 0.97001 0.95004 1.22576 1.00685 0.94811 0.97037 1.22727 1.01319 0.97081 0.96134 1.22616 1.02356 0.96326 0.93560 0.93495 0.79836 0.90511 0.92660 0.75463 0.75858 0.76269 0.72509 0.87958 0.93004 0.92073 0.89895 0.91133 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.29 13.97 21.65 0.30 -62.98 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.94 45.60 27.74 68.60 1.90 47.50 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 7 C -0.23 -12.67 10.45 84.03 0.88 -11.80 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 N -0.74 -33.42 5.13 -321.56 -1.65 -35.07 16 10 C 0.18 6.64 4.27 45.28 0.19 6.83 16 11 H 0.08 2.99 8.10 -2.38 -0.02 2.97 16 12 C -0.17 -5.96 7.69 31.23 0.24 -5.72 16 13 C 0.15 4.41 4.12 45.28 0.19 4.60 16 14 H 0.09 2.81 7.46 -2.38 -0.02 2.79 16 15 N -0.69 -17.59 5.04 -445.19 -2.24 -19.83 16 16 C 0.61 17.21 7.78 86.42 0.67 17.88 16 17 O -0.60 -20.66 16.51 -4.36 -0.07 -20.73 16 18 C -0.36 -9.02 6.15 -20.00 -0.12 -9.14 16 19 C 0.13 2.86 11.48 85.60 0.98 3.84 16 20 N -0.33 -8.02 12.61 -56.32 -0.71 -8.73 16 21 N -0.31 -6.61 4.67 -191.50 -0.89 -7.50 16 22 C -0.03 -0.30 11.91 82.49 0.98 0.68 16 23 C 0.06 0.31 11.92 82.55 0.98 1.29 16 24 N -0.57 -7.72 6.24 -191.82 -1.20 -8.91 16 25 H 0.45 5.00 8.96 -92.71 -0.83 4.17 16 26 C 0.29 6.56 8.38 133.14 1.12 7.67 16 27 C -0.12 -3.30 0.92 -52.31 -0.05 -3.35 16 28 C -0.11 -3.11 7.47 30.89 0.23 -2.88 16 29 C -0.14 -3.56 8.08 31.23 0.25 -3.31 16 30 C -0.11 -2.68 7.49 30.88 0.23 -2.44 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.37 16.21 3.78 -92.71 -0.35 15.86 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.41 8.62 7.55 -92.71 -0.70 7.92 16 36 H 0.23 3.24 7.49 -2.91 -0.02 3.22 16 37 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.26 -1.66 8.06 -2.91 -0.02 -1.68 16 39 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.62 6.42 -2.39 -0.02 1.61 16 41 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -83.29 365.49 1.81 -81.47 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.87 Total: 33.87 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 7.25 Total: 0.92 kcal Atomic # 7 Polarization: -136.64 SS G_CDS: -6.39 Total: -143.03 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.73 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Total: -83.29 1.81 -81.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.553 kcal (2) G-P(sol) polarization free energy of solvation -83.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds