Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48495 * 109.47444 * 240.00342 * 3 2 1 5 5 H 1.48508 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47024 * 119.99801 * 3 2 1 7 7 C 1.38817 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99792 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.95372 * 23.59333 * 10 9 7 12 12 C 1.53957 * 113.66407 * 252.18888 * 10 9 7 13 13 C 1.53948 * 87.29686 * 220.79629 * 12 10 9 14 14 H 1.08998 * 113.74669 * 139.21661 * 13 12 10 15 15 N 1.46508 * 113.66423 * 270.26262 * 13 12 10 16 16 C 1.34773 * 119.99818 * 252.19151 * 15 13 12 17 17 O 1.21719 * 119.99941 * 359.97438 * 16 15 13 18 18 C 1.46598 * 120.00090 * 179.97438 * 16 15 13 19 19 C 1.41156 * 126.56018 * 0.02562 * 18 16 15 20 20 N 1.30520 * 108.27462 * 179.97438 * 19 18 16 21 21 N 1.39990 * 109.37063 * 0.02562 * 20 19 18 22 22 C 1.38459 * 143.85274 * 179.97438 * 21 20 19 23 23 C 1.33069 * 108.42033 * 180.02562 * 22 21 20 24 24 N 1.38060 * 108.14032 * 0.02562 * 23 22 21 25 25 H 0.97000 * 126.15909 * 180.02562 * 24 23 22 26 26 C 1.35013 * 108.27422 * 359.76092 * 21 20 19 27 27 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 28 28 C 1.52910 * 121.13680 * 100.81909 * 27 13 12 29 29 C 1.53949 * 86.78077 * 100.82535 * 28 27 13 30 30 C 1.52913 * 121.13887 * 209.38757 * 27 13 12 31 31 H 0.96992 * 120.00080 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00510 * 0.02562 * 9 7 2 33 33 H 1.09001 * 113.57949 * 335.39525 * 12 10 9 34 34 H 1.08996 * 113.58143 * 106.19185 * 12 10 9 35 35 H 0.96995 * 120.00007 * 72.17985 * 15 13 12 36 36 H 1.07999 * 125.86422 * 359.97438 * 19 18 16 37 37 H 1.07992 * 125.78613 * 0.03043 * 22 21 20 38 38 H 1.08000 * 125.93102 * 180.02562 * 23 22 21 39 39 H 1.09006 * 113.66074 * 215.29190 * 28 27 13 40 40 H 1.08994 * 113.66448 * 346.35155 * 28 27 13 41 41 H 1.09009 * 113.57633 * 270.12923 * 29 28 27 42 42 H 1.08992 * 113.65542 * 139.35069 * 29 28 27 43 43 H 1.08992 * 113.66210 * 13.64580 * 30 27 13 44 44 H 1.08991 * 113.66466 * 144.61413 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0673 -3.5649 0.4012 12 6 1.9936 -4.4075 -1.3431 13 6 1.8252 -5.7024 -0.5276 14 1 1.0945 -6.3936 -0.9474 15 7 3.0934 -6.3517 -0.1865 16 6 3.4513 -7.4961 -0.8019 17 8 2.7207 -7.9904 -1.6406 18 6 4.7206 -8.1456 -0.4611 19 6 5.6675 -7.6968 0.4847 20 7 6.6612 -8.5428 0.5022 21 7 6.4141 -9.5684 -0.4180 22 6 6.9267 -10.7382 -0.9529 23 6 6.0649 -11.2010 -1.8550 24 7 4.9919 -10.3340 -1.9089 25 1 4.2126 -10.4226 -2.4796 26 6 5.2227 -9.3308 -1.0070 27 6 1.2657 -4.8230 0.5913 28 6 -0.2402 -4.7137 0.8330 29 6 -0.0385 -5.7074 1.9915 30 6 1.4199 -5.2189 2.0602 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.1198 -4.1535 -1.9431 34 1 2.9235 -4.3674 -1.9103 35 1 3.6755 -5.9579 0.4819 36 1 5.5841 -6.8062 1.0899 37 1 7.8664 -11.1970 -0.6835 38 1 6.1841 -12.0991 -2.4429 39 1 -0.5606 -3.7235 1.1569 40 1 -0.8442 -5.1100 0.0169 41 1 -0.1351 -6.7512 1.6924 42 1 -0.6213 -5.4668 2.8805 43 1 2.1419 -6.0187 2.2242 44 1 1.5676 -4.3708 2.7287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078795550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = 159.691018 kcal Electronic energy + Delta-G solvation = -27753.119376 eV Core-core repulsion = 23903.650646 eV Total energy + Delta-G solvation = -3849.468731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.35181 -40.50697 -38.85820 -37.98153 -34.95525 -33.95486 -33.00917 -32.13528 -29.96837 -29.83657 -28.61422 -25.41174 -24.78477 -24.03695 -23.25626 -22.79135 -21.95775 -21.30648 -20.71904 -20.02661 -18.41583 -17.55232 -17.06340 -16.56792 -16.47476 -16.05414 -15.53152 -15.26184 -15.04581 -14.63210 -14.43870 -14.30531 -14.04256 -13.71510 -13.47034 -13.24320 -12.89577 -12.58369 -12.38474 -12.01102 -11.77712 -11.58657 -11.30246 -11.18127 -10.88466 -10.84743 -10.77636 -10.59746 -10.16704 -10.07960 -9.80094 -9.73654 -9.57178 -9.45774 -9.27428 -8.77665 -8.63469 -7.87468 -6.91659 -5.76044 -3.03928 1.29971 1.60650 1.72638 2.18308 2.50344 3.39863 3.45022 3.49827 3.50418 3.56516 4.07822 4.40744 4.56326 4.60570 4.84669 4.88946 4.93857 5.05504 5.11959 5.25490 5.28804 5.33984 5.37078 5.44703 5.51463 5.71926 5.93917 5.99457 6.09450 6.14039 6.19106 6.25539 6.28232 6.29095 6.44755 6.50001 6.54100 6.63119 6.75513 6.77383 6.85192 7.02861 7.15568 7.43714 7.71357 7.82598 8.43075 8.51081 9.54366 10.13117 10.47877 11.46357 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.002756 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.184361 B =10155.854489 C =10862.657327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.180 3.820 11 H 0.075 0.925 12 C -0.176 4.176 13 C 0.148 3.852 14 H 0.095 0.905 15 N -0.701 5.701 16 C 0.604 3.396 17 O -0.571 6.571 18 C -0.332 4.332 19 C 0.127 3.873 20 N -0.300 5.300 21 N -0.309 5.309 22 C 0.002 3.998 23 C 0.027 3.973 24 N -0.574 5.574 25 H 0.445 0.555 26 C 0.320 3.680 27 C -0.126 4.126 28 C -0.105 4.105 29 C -0.140 4.140 30 C -0.123 4.123 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.201 0.799 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 -24.313 -0.571 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.068 3.932 11 H 0.093 0.907 12 C -0.218 4.218 13 C 0.042 3.958 14 H 0.113 0.887 15 N -0.349 5.349 16 C 0.394 3.606 17 O -0.452 6.452 18 C -0.352 4.352 19 C -0.056 4.056 20 N -0.122 5.122 21 N -0.078 5.078 22 C -0.124 4.124 23 C -0.101 4.101 24 N -0.186 5.186 25 H 0.287 0.713 26 C 0.084 3.916 27 C -0.128 4.128 28 C -0.142 4.142 29 C -0.177 4.177 30 C -0.160 4.160 31 H 0.066 0.934 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.218 0.782 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.121 -24.743 -0.576 27.133 hybrid contribution -0.583 1.226 -0.411 1.418 sum 10.538 -23.516 -0.986 25.789 Atomic orbital electron populations 1.69640 1.05091 1.25799 1.57554 1.24738 0.95493 0.97674 1.02941 0.86287 0.78541 0.83635 0.77831 1.21296 1.21757 1.21294 1.19253 0.91017 0.84251 1.42798 0.91224 1.42360 1.05863 0.99625 1.86792 1.21392 0.94644 0.84933 0.92228 0.90742 1.24292 1.01832 0.95512 1.00156 1.21447 0.85045 0.93275 0.96033 0.88723 1.45262 1.22132 1.24662 1.42848 1.16810 0.83813 0.79720 0.80264 1.90734 1.54297 1.65577 1.34569 1.18494 1.02982 1.00241 1.13504 1.24043 0.89241 0.97488 0.94862 1.77496 1.24054 0.98623 1.12004 1.47047 1.14403 1.18121 1.28262 1.21588 1.03071 0.87616 1.00121 1.22290 0.87078 0.98409 1.02335 1.41593 1.21583 1.19839 1.35545 0.71345 1.19213 0.89213 0.92151 0.91001 1.23448 0.97764 0.97950 0.93684 1.22458 0.93821 1.00267 0.97696 1.22817 0.97230 0.98789 0.98907 1.22628 0.96478 1.00425 0.96517 0.93450 0.77822 0.89742 0.92317 0.76765 0.78202 0.79080 0.77832 0.88505 0.91943 0.91033 0.91999 0.92189 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.23 5.30 -52.98 -0.28 -17.51 16 10 C 0.18 3.47 4.27 -67.48 -0.29 3.18 16 11 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.18 -3.18 7.68 -25.75 -0.20 -3.38 16 13 C 0.15 2.33 4.12 -67.48 -0.28 2.05 16 14 H 0.09 1.60 7.46 -51.93 -0.39 1.22 16 15 N -0.70 -9.64 4.80 -54.70 -0.26 -9.90 16 16 C 0.60 9.02 7.78 -12.89 -0.10 8.92 16 17 O -0.57 -10.13 16.51 5.17 0.09 -10.05 16 18 C -0.33 -4.32 6.15 -104.83 -0.65 -4.96 16 19 C 0.13 1.44 11.48 -17.00 -0.20 1.24 16 20 N -0.30 -3.76 12.61 30.84 0.39 -3.37 16 21 N -0.31 -3.47 4.67 -11.88 -0.06 -3.52 16 22 C 0.00 0.01 11.91 -16.35 -0.19 -0.18 16 23 C 0.03 0.12 11.92 -16.54 -0.20 -0.07 16 24 N -0.57 -4.61 6.24 -11.98 -0.07 -4.68 16 25 H 0.44 2.98 8.96 -40.82 -0.37 2.62 16 26 C 0.32 3.79 8.38 -154.52 -1.29 2.49 16 27 C -0.13 -2.02 0.92 -154.71 -0.14 -2.16 16 28 C -0.10 -1.69 7.15 -26.28 -0.19 -1.88 16 29 C -0.14 -1.94 8.08 -25.75 -0.21 -2.15 16 30 C -0.12 -1.76 7.62 -26.28 -0.20 -1.96 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.39 9.96 6.23 -40.82 -0.25 9.70 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.40 4.62 7.36 -40.82 -0.30 4.32 16 36 H 0.20 1.56 7.49 -52.49 -0.39 1.17 16 37 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.20 -0.06 8.06 -52.49 -0.42 -0.48 16 39 H 0.10 1.79 7.03 -51.93 -0.36 1.43 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.76 7.58 -51.93 -0.39 0.36 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -35.89 368.31 -9.13 -45.02 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -5.81 Total: 14.36 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.38 Total: -6.05 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: 0.44 Total: -66.06 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.89 -9.13 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078795550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.710 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds