Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39962 * 119.94854 * 2 1 4 4 C 1.35760 * 119.35815 * 179.68360 * 3 2 1 5 5 N 1.36314 * 119.15119 * 0.46659 * 4 3 2 6 6 N 1.39910 * 132.15971 * 179.37870 * 5 4 3 7 7 C 1.30696 * 109.51969 * 180.02562 * 6 5 4 8 8 C 1.40656 * 108.72341 * 359.97438 * 7 6 5 9 9 C 1.46586 * 126.53691 * 179.97438 * 8 7 6 10 10 O 1.21715 * 119.99776 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99807 * 0.03350 * 9 8 7 12 12 C 1.46495 * 119.99469 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.64335 * 31.86068 * 12 11 9 14 14 C 1.54321 * 110.72517 * 268.51761 * 12 11 9 15 15 N 1.47018 * 107.27482 * 219.44758 * 14 12 11 16 16 C 1.36935 * 125.64517 * 178.91922 * 15 14 12 17 17 H 1.08004 * 120.00113 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00369 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46901 * 90.00404 * 20 18 16 22 22 H 1.48502 * 109.46877 * 210.00146 * 20 18 16 23 23 H 1.48495 * 109.47225 * 330.00314 * 20 18 16 24 24 C 1.47419 * 108.70385 * 358.93758 * 15 14 12 25 25 C 1.54906 * 104.83089 * 24.13297 * 24 15 14 26 26 H 1.09005 * 111.04341 * 81.07427 * 25 24 15 27 27 C 1.53006 * 111.00401 * 204.91565 * 25 24 15 28 28 C 1.36594 * 119.73088 * 359.65842 * 5 4 3 29 29 N 1.31495 * 119.94719 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47050 * 270.02710 * 1 2 3 31 31 H 1.09010 * 109.46808 * 30.02437 * 1 2 3 32 32 H 1.08994 * 109.47145 * 150.02397 * 1 2 3 33 33 H 1.08007 * 120.32010 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.41945 * 179.86725 * 4 3 2 35 35 H 1.07995 * 125.64118 * 180.02562 * 7 6 5 36 36 H 0.96998 * 119.99997 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.87923 * 338.86811 * 14 12 11 38 38 H 1.09009 * 109.88126 * 100.02538 * 14 12 11 39 39 H 0.97001 * 120.00191 * 180.02562 * 19 18 16 40 40 H 1.08995 * 110.37192 * 265.29094 * 24 15 14 41 41 H 1.09005 * 110.36729 * 142.96280 * 24 15 14 42 42 H 1.09001 * 109.46801 * 172.19365 * 27 25 24 43 43 H 1.09001 * 109.46998 * 292.18961 * 27 25 24 44 44 H 1.09000 * 109.47050 * 52.19253 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2127 0.0000 4 6 3.5633 1.1988 0.0065 5 7 4.2150 0.0015 0.0033 6 7 5.5749 -0.3274 -0.0031 7 6 5.7097 -1.6274 -0.0046 8 6 4.4313 -2.2139 0.0015 9 6 4.1293 -3.6483 0.0016 10 8 2.9724 -4.0266 0.0067 11 7 5.1326 -4.5483 -0.0038 12 6 4.8307 -5.9817 -0.0031 13 1 3.9012 -6.1789 -0.5371 14 6 4.7618 -6.5246 1.4398 15 7 5.3941 -7.8519 1.4376 16 6 5.5550 -8.6610 2.5306 17 1 6.0351 -9.6226 2.4246 18 6 5.1012 -8.2453 3.7748 19 7 4.5157 -7.0736 3.9040 20 14 5.3201 -9.3494 5.2656 21 1 6.6211 -9.0502 5.9163 22 1 4.2169 -9.1048 6.2290 23 1 5.2966 -10.7708 4.8366 24 6 5.8266 -8.1672 0.0640 25 6 6.0016 -6.7897 -0.6227 26 1 6.9626 -6.3438 -0.3662 27 6 5.8431 -6.9091 -2.1398 28 6 3.4971 -1.1606 0.0006 29 7 2.1635 -1.1394 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8899 -0.5143 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6701 2.1506 0.0004 34 1 4.1197 2.1244 0.0045 35 1 6.6476 -2.1628 -0.0088 36 1 6.0545 -4.2467 -0.0082 37 1 5.3012 -5.8580 2.1128 38 1 3.7216 -6.6100 1.7545 39 1 4.1989 -6.7829 4.7735 40 1 5.0636 -8.7526 -0.4491 41 1 6.7737 -8.7066 0.0789 42 1 5.8322 -5.9135 -2.5834 43 1 6.6771 -7.4797 -2.5484 44 1 4.9073 -7.4190 -2.3683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080798569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = 111.872134 kcal Electronic energy + Delta-G solvation = -27776.533763 eV Core-core repulsion = 23924.991449 eV Total energy + Delta-G solvation = -3851.542313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60527 -39.27160 -38.41852 -37.19445 -34.35055 -33.72775 -32.59557 -32.28136 -30.28351 -29.95786 -28.58685 -27.47692 -25.55353 -24.53042 -23.64870 -22.76069 -22.48850 -20.45394 -19.89098 -19.53929 -18.50502 -17.40618 -16.83438 -16.55786 -16.39780 -15.67603 -15.48296 -14.84303 -14.51897 -14.16225 -13.93632 -13.85712 -13.83585 -13.57589 -13.04298 -12.98829 -12.67613 -12.61395 -12.56394 -12.07233 -11.87252 -11.66440 -11.58907 -11.39968 -11.23826 -10.93266 -10.71691 -10.48235 -10.29041 -9.96505 -9.87399 -9.84270 -9.74086 -9.61151 -9.30516 -8.53359 -8.34385 -8.02549 -6.74094 -5.60307 -2.95638 0.18645 0.56040 1.72841 2.08481 3.00122 3.45715 3.50029 3.50628 3.53191 3.58498 3.89688 3.93619 4.02484 4.46407 4.57720 4.71613 4.86962 4.93501 5.07567 5.18125 5.23858 5.29701 5.41640 5.47025 5.53383 5.60495 5.64074 5.83493 5.87613 6.01911 6.10428 6.10618 6.20785 6.26439 6.34631 6.47246 6.60703 6.72064 6.94084 7.08256 7.11363 7.48292 7.67145 7.73628 7.96328 8.13904 8.35340 8.87911 9.30498 9.91342 10.56882 11.49952 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003100 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.771955 B = 9029.829961 C = 9856.269797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.205 3.795 3 C -0.221 4.221 4 C 0.165 3.835 5 N -0.312 5.312 6 N -0.315 5.315 7 C 0.129 3.871 8 C -0.278 4.278 9 C 0.593 3.407 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.125 3.875 13 H 0.089 0.911 14 C 0.173 3.827 15 N -0.606 5.606 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.141 3.859 25 C -0.114 4.114 26 H 0.076 0.924 27 C -0.137 4.137 28 C 0.321 3.679 29 N -0.439 5.439 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.205 0.795 36 H 0.391 0.609 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 19.936 -12.061 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.042 3.958 3 C -0.245 4.245 4 C 0.030 3.970 5 N -0.082 5.082 6 N -0.137 5.137 7 C -0.052 4.052 8 C -0.294 4.294 9 C 0.379 3.621 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.020 3.980 13 H 0.107 0.893 14 C 0.047 3.953 15 N -0.333 5.333 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.014 3.986 25 C -0.134 4.134 26 H 0.095 0.905 27 C -0.195 4.195 28 C 0.090 3.910 29 N -0.151 5.151 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.187 0.813 34 H 0.200 0.800 35 H 0.221 0.779 36 H 0.224 0.776 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.291 19.792 -11.821 23.167 hybrid contribution 0.705 -0.217 1.008 1.249 sum -1.586 19.575 -10.812 22.419 Atomic orbital electron populations 1.20856 0.86770 1.04611 1.04348 1.22115 0.98294 0.87393 0.87977 1.21754 0.92448 1.01343 1.08939 1.22079 0.92673 0.88470 0.93786 1.47022 1.07768 1.06398 1.46969 1.77553 0.88715 1.15932 1.31469 1.24157 0.98424 0.90607 0.92055 1.19595 0.90372 0.93640 1.25839 1.16688 0.85397 0.83375 0.76615 1.90840 1.19635 1.80323 1.49606 1.45628 1.08319 1.06413 1.75834 1.22438 0.97776 0.77813 0.99946 0.89317 1.21482 0.98388 0.86172 0.89242 1.44417 1.68926 1.17362 1.02601 1.19040 1.33080 0.98244 0.85411 0.90398 1.24826 1.00787 0.97234 0.97614 1.69989 1.44309 1.19365 1.22802 0.86141 0.77145 0.79699 0.82900 1.21710 1.21734 1.20711 1.21582 0.97261 0.93070 0.86639 1.22621 0.98204 0.98160 0.94424 0.90520 1.21694 1.01527 1.01062 0.95168 1.20354 0.87869 0.86188 0.96638 1.68194 1.03742 1.28202 1.14985 0.88935 0.89662 0.89185 0.81321 0.80026 0.77858 0.77557 0.93176 0.93485 0.93802 0.96085 0.94094 0.93104 0.92920 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.19 36.01 0.37 -0.35 16 2 C 0.21 2.08 6.83 -82.09 -0.56 1.52 16 3 C -0.22 -1.48 9.72 -39.82 -0.39 -1.87 16 4 C 0.17 1.35 11.29 -16.45 -0.19 1.16 16 5 N -0.31 -4.02 3.86 -11.97 -0.05 -4.07 16 6 N -0.31 -4.16 12.58 30.77 0.39 -3.77 16 7 C 0.13 1.67 11.44 -17.12 -0.20 1.47 16 8 C -0.28 -4.61 6.17 -104.65 -0.65 -5.25 16 9 C 0.59 11.55 7.78 -12.89 -0.10 11.45 16 10 O -0.53 -12.51 16.38 5.18 0.08 -12.42 16 11 N -0.71 -12.47 5.09 -53.36 -0.27 -12.74 16 12 C 0.13 2.53 2.79 -66.10 -0.18 2.34 16 13 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 14 C 0.17 4.47 5.12 -3.07 -0.02 4.46 16 15 N -0.61 -16.00 3.39 -170.08 -0.58 -16.58 16 16 C -0.23 -6.58 10.28 -15.06 -0.15 -6.74 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -28.29 10.31 55.49 0.57 -27.72 16 20 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.14 2.96 6.70 -2.53 -0.02 2.94 16 25 C -0.11 -1.98 3.27 -88.47 -0.29 -2.26 16 26 H 0.08 1.25 8.01 -51.93 -0.42 0.84 16 27 C -0.14 -1.91 9.31 37.16 0.35 -1.57 16 28 C 0.32 5.14 7.74 -155.84 -1.21 3.93 16 29 N -0.44 -6.83 10.18 -8.25 -0.08 -6.91 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.28 8.09 -51.92 -0.42 -0.14 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.17 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.20 1.80 7.46 -52.49 -0.39 1.41 16 36 H 0.39 5.48 7.48 -40.82 -0.31 5.18 16 37 H 0.05 1.42 7.27 -51.93 -0.38 1.04 16 38 H 0.05 1.42 7.51 -51.92 -0.39 1.03 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -39.62 369.08 -8.75 -48.37 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.03 Total: 1.61 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -3.33 Total: 10.90 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -0.02 Total: -71.78 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.62 -8.75 -48.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080798569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.240 kcal (2) G-P(sol) polarization free energy of solvation -39.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds