Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30698 * 125.63766 * 2 1 4 4 N 1.39911 * 109.51545 * 180.28827 * 3 2 1 5 5 C 1.36319 * 132.15780 * 179.71470 * 4 3 2 6 6 C 1.35750 * 119.15452 * 180.02562 * 5 4 3 7 7 C 1.39964 * 119.35757 * 359.97438 * 6 5 4 8 8 N 1.31498 * 120.10498 * 0.02562 * 7 6 5 9 9 C 1.33383 * 120.85447 * 359.97438 * 8 7 6 10 10 C 1.40643 * 125.63539 * 179.81082 * 2 1 3 11 11 C 1.46586 * 126.53874 * 359.97438 * 10 2 1 12 12 O 1.21713 * 120.00031 * 269.68883 * 11 10 2 13 13 N 1.34777 * 119.99782 * 89.68558 * 11 10 2 14 14 C 1.46499 * 119.99665 * 179.72446 * 13 11 10 15 15 H 1.08997 * 110.64239 * 36.96345 * 14 13 11 16 16 C 1.54326 * 110.72299 * 273.82488 * 14 13 11 17 17 N 1.47018 * 107.27514 * 219.44888 * 16 14 13 18 18 C 1.36941 * 125.65291 * 178.97752 * 17 16 14 19 19 H 1.07998 * 120.00071 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99788 * 359.96851 * 18 17 16 21 21 N 1.31624 * 119.99708 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.46987 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.46831 * 210.00053 * 22 20 18 25 25 H 1.48501 * 109.47182 * 329.99921 * 22 20 18 26 26 C 1.47425 * 108.70281 * 358.93315 * 17 16 14 27 27 C 1.54914 * 104.83224 * 24.13393 * 26 17 16 28 28 H 1.08997 * 111.00055 * 81.05784 * 27 26 17 29 29 C 1.52999 * 111.00831 * 204.91667 * 27 26 17 30 30 H 1.08998 * 109.46919 * 270.19277 * 1 2 3 31 31 H 1.09002 * 109.46502 * 30.19084 * 1 2 3 32 32 H 1.08993 * 109.46881 * 150.18594 * 1 2 3 33 33 H 1.08005 * 120.42058 * 0.02562 * 5 4 3 34 34 H 1.08005 * 120.32244 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.94714 * 179.97438 * 7 6 5 36 36 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 37 37 H 1.09007 * 109.88207 * 338.86027 * 16 14 13 38 38 H 1.08995 * 109.88314 * 99.86792 * 16 14 13 39 39 H 0.97003 * 119.99424 * 180.02562 * 21 20 18 40 40 H 1.09000 * 110.37155 * 142.97144 * 26 17 16 41 41 H 1.08998 * 110.37328 * 265.18892 * 26 17 16 42 42 H 1.09000 * 109.47236 * 172.19316 * 29 27 26 43 43 H 1.08999 * 109.46773 * 292.19670 * 29 27 26 44 44 H 1.09002 * 109.46877 * 52.19217 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2686 1.0622 0.0000 4 7 3.6127 0.6737 -0.0066 5 6 4.7722 1.3904 -0.0143 6 6 5.9580 0.7297 -0.0201 7 6 5.9637 -0.6699 -0.0175 8 7 4.8288 -1.3341 -0.0101 9 6 3.6601 -0.6914 -0.0044 10 6 2.3265 -1.1431 0.0038 11 6 1.8778 -2.5385 0.0089 12 8 1.6973 -3.1159 1.0651 13 7 1.6650 -3.1822 -1.1559 14 6 1.2223 -4.5787 -1.1508 15 1 0.5280 -4.7587 -0.3301 16 6 2.4309 -5.5344 -1.0629 17 7 2.1511 -6.6746 -1.9478 18 6 2.9862 -7.7372 -2.1687 19 1 2.6871 -8.5286 -2.8400 20 6 4.2171 -7.7971 -1.5298 21 7 4.5813 -6.8328 -0.7113 22 14 5.3565 -9.2463 -1.8316 23 1 6.2469 -8.9447 -2.9811 24 1 6.1786 -9.4903 -0.6193 25 1 4.5497 -10.4557 -2.1343 26 6 0.8221 -6.4852 -2.5571 27 6 0.5794 -4.9558 -2.5117 28 1 1.0873 -4.4550 -3.3358 29 6 -0.9171 -4.6376 -2.5181 30 1 -0.3633 0.0035 1.0277 31 1 -0.3632 0.8883 -0.5168 32 1 -0.3633 -0.8916 -0.5109 33 1 4.7477 2.4702 -0.0158 34 1 6.8881 1.2787 -0.0258 35 1 6.9017 -1.2052 -0.0225 36 1 1.8091 -2.7222 -1.9977 37 1 3.3340 -5.0213 -1.3938 38 1 2.5561 -5.8802 -0.0369 39 1 5.4416 -6.8745 -0.2652 40 1 0.8236 -6.8385 -3.5883 41 1 0.0612 -7.0090 -1.9786 42 1 -1.0625 -3.5710 -2.3464 43 1 -1.3427 -4.9116 -3.4834 44 1 -1.4123 -5.2034 -1.7289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080963949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = 113.371143 kcal Electronic energy + Delta-G solvation = -28287.222055 eV Core-core repulsion = 24435.744744 eV Total energy + Delta-G solvation = -3851.477311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54331 -39.29661 -38.28628 -37.19771 -34.32325 -33.70165 -32.45674 -32.31326 -30.28231 -29.82186 -28.57221 -27.45604 -25.54888 -24.71297 -24.18966 -23.14728 -21.42316 -20.36624 -19.86059 -19.47592 -18.25261 -17.55909 -16.92873 -16.75127 -16.36243 -15.72000 -15.64277 -14.85038 -14.59800 -13.96693 -13.89328 -13.69941 -13.62565 -13.39040 -13.04981 -12.97192 -12.70437 -12.64355 -12.52468 -12.42397 -11.84631 -11.62259 -11.39690 -11.28925 -11.22318 -10.93291 -10.71465 -10.49838 -10.29065 -9.94006 -9.87312 -9.83311 -9.62200 -9.60683 -9.44134 -8.51495 -8.30849 -8.03376 -6.72434 -5.57804 -2.93827 0.29661 0.63949 1.77377 2.25183 3.00444 3.21474 3.46250 3.50809 3.53599 3.66537 3.70969 3.99648 4.14123 4.58609 4.59962 4.72688 4.89924 5.09774 5.15823 5.28429 5.39946 5.41390 5.43917 5.46748 5.54318 5.64207 5.68111 5.79224 5.86457 6.06842 6.08699 6.13120 6.23652 6.29503 6.34053 6.44798 6.59798 6.71380 6.91824 7.05923 7.21549 7.49942 7.68463 7.74254 7.99449 8.09316 8.37454 8.77975 9.32112 9.92898 10.58432 11.52064 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004030 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.485582 B = 6945.762221 C = 8857.329292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.154 3.846 3 N -0.316 5.316 4 N -0.307 5.307 5 C 0.162 3.838 6 C -0.225 4.225 7 C 0.184 3.816 8 N -0.446 5.446 9 C 0.297 3.703 10 C -0.271 4.271 11 C 0.607 3.393 12 O -0.530 6.530 13 N -0.702 5.702 14 C 0.122 3.878 15 H 0.087 0.913 16 C 0.174 3.826 17 N -0.606 5.606 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.914 5.914 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.142 3.858 27 C -0.114 4.114 28 H 0.076 0.924 29 C -0.137 4.137 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.252 0.748 40 H 0.040 0.960 41 H 0.021 0.979 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 20.265 -1.663 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 N -0.141 5.141 4 N -0.076 5.076 5 C 0.026 3.974 6 C -0.248 4.248 7 C 0.001 3.999 8 N -0.156 5.156 9 C 0.068 3.932 10 C -0.288 4.288 11 C 0.390 3.610 12 O -0.406 6.406 13 N -0.352 5.352 14 C 0.017 3.983 15 H 0.105 0.895 16 C 0.048 3.952 17 N -0.333 5.333 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.134 4.134 28 H 0.095 0.905 29 C -0.194 4.194 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.198 0.802 34 H 0.187 0.813 35 H 0.201 0.799 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.931 20.087 -0.800 20.315 hybrid contribution 1.195 -0.387 -0.495 1.350 sum -1.736 19.700 -1.295 19.818 Atomic orbital electron populations 1.20374 0.84943 1.04166 1.04236 1.22370 0.97205 0.88380 0.92665 1.77467 0.82462 1.21290 1.32870 1.46853 1.06580 1.07206 1.46940 1.22069 0.81736 0.99415 0.94156 1.21901 0.98101 0.96409 1.08434 1.23587 0.96777 0.91417 0.88132 1.68295 0.96093 1.37040 1.14219 1.20394 0.93929 0.80326 0.98592 1.19401 0.88801 0.95273 1.25277 1.16680 0.76694 0.83555 0.84045 1.90815 1.51048 1.67551 1.31144 1.45892 1.68278 1.13285 1.07711 1.22492 0.98344 0.80326 0.97159 0.89537 1.21465 0.92258 0.86125 0.95308 1.44416 1.14780 1.22899 1.51197 1.19028 0.96306 0.97994 1.22736 0.90435 1.24831 0.97874 0.98297 0.99334 1.70003 1.21554 1.32356 1.32168 0.86159 0.80881 0.81924 0.77028 1.21731 1.21718 1.20732 1.21573 0.88884 0.91364 0.96684 1.22610 0.95157 0.98711 0.96888 0.90546 1.21697 0.95449 1.00826 1.01472 0.89207 0.89896 0.89499 0.80246 0.81290 0.79898 0.77255 0.93019 0.93443 0.93753 0.94142 0.96097 0.93095 0.92871 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.26 36.01 0.37 -0.43 16 2 C 0.15 2.17 7.22 -82.16 -0.59 1.58 16 3 N -0.32 -4.40 12.58 33.80 0.43 -3.97 16 4 N -0.31 -4.10 3.86 -11.97 -0.05 -4.15 16 5 C 0.16 1.38 11.29 -16.45 -0.19 1.20 16 6 C -0.22 -1.56 10.05 -39.83 -0.40 -1.96 16 7 C 0.18 1.93 11.28 -17.05 -0.19 1.74 16 8 N -0.45 -7.26 10.47 -12.00 -0.13 -7.39 16 9 C 0.30 4.89 7.90 -155.84 -1.23 3.66 16 10 C -0.27 -4.65 5.91 -104.65 -0.62 -5.27 16 11 C 0.61 11.96 7.28 -12.89 -0.09 11.87 16 12 O -0.53 -12.64 16.84 5.18 0.09 -12.55 16 13 N -0.70 -12.73 5.13 -53.36 -0.27 -13.01 16 14 C 0.12 2.47 2.70 -66.09 -0.18 2.29 16 15 H 0.09 1.84 7.60 -51.93 -0.39 1.44 16 16 C 0.17 4.56 5.12 -3.06 -0.02 4.55 16 17 N -0.61 -16.12 3.39 -170.07 -0.58 -16.69 16 18 C -0.23 -6.70 10.28 -15.06 -0.15 -6.86 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.91 -28.29 10.31 55.49 0.57 -27.72 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.14 2.98 6.70 -2.53 -0.02 2.96 16 27 C -0.11 -1.98 3.25 -88.47 -0.29 -2.26 16 28 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 29 C -0.14 -1.85 9.31 37.16 0.35 -1.50 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 33 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.17 0.41 8.06 -52.48 -0.42 -0.01 16 35 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.39 6.20 8.50 -40.82 -0.35 5.85 16 37 H 0.05 1.51 7.27 -51.93 -0.38 1.13 16 38 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16 39 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -39.30 371.40 -8.81 -48.11 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.10 Total: 2.75 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -3.35 Total: 11.28 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -0.03 Total: -72.93 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.30 -8.81 -48.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080963949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.483 kcal (2) G-P(sol) polarization free energy of solvation -39.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds