Wall clock time and date at job start Tue Mar 31 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35462 * 125.11691 * 2 1 4 4 H 0.97007 * 124.79078 * 0.04641 * 3 2 1 5 5 C 1.37960 * 110.43040 * 180.02562 * 3 2 1 6 6 C 1.39126 * 133.19505 * 180.02562 * 5 3 2 7 7 C 1.37759 * 119.92909 * 179.97438 * 6 5 3 8 8 C 1.38755 * 120.63887 * 0.02562 * 7 6 5 9 9 C 1.37750 * 120.29826 * 359.97438 * 8 7 6 10 10 C 1.39275 * 119.67326 * 359.97438 * 9 8 7 11 11 C 1.36373 * 125.11494 * 180.02562 * 2 1 3 12 12 C 1.46921 * 126.77016 * 0.02562 * 11 2 1 13 13 O 1.21669 * 120.00038 * 269.95202 * 12 11 2 14 14 N 1.34770 * 119.99623 * 89.94381 * 12 11 2 15 15 C 1.46503 * 119.99884 * 180.02562 * 14 12 11 16 16 H 1.08995 * 110.64054 * 34.30027 * 15 14 12 17 17 C 1.54323 * 110.71962 * 271.16251 * 15 14 12 18 18 N 1.47024 * 107.27318 * 219.44344 * 17 15 14 19 19 C 1.36936 * 125.65227 * 178.97773 * 18 17 15 20 20 H 1.07998 * 119.99942 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99800 * 180.02562 * 19 18 17 22 22 N 1.31610 * 120.00406 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99509 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47462 * 89.99956 * 23 21 19 25 25 H 1.48504 * 109.47033 * 209.99956 * 23 21 19 26 26 H 1.48506 * 109.47343 * 329.99753 * 23 21 19 27 27 C 1.47433 * 108.70177 * 358.93997 * 18 17 15 28 28 C 1.55120 * 104.93940 * 24.00337 * 27 18 17 29 29 H 1.09003 * 111.16316 * 205.12833 * 28 27 18 30 30 O 1.42906 * 110.93851 * 81.21577 * 28 27 18 31 31 H 1.08996 * 109.46959 * 89.97690 * 1 2 3 32 32 H 1.09008 * 109.47144 * 209.97262 * 1 2 3 33 33 H 1.08995 * 109.46884 * 329.97090 * 1 2 3 34 34 H 1.08003 * 120.02971 * 0.02562 * 6 5 3 35 35 H 1.08005 * 119.68044 * 180.27822 * 7 6 5 36 36 H 1.07998 * 119.84886 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.16407 * 180.02562 * 9 8 7 38 38 H 0.97002 * 120.00348 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.88596 * 338.85745 * 17 15 14 40 40 H 1.08996 * 109.88646 * 99.87103 * 17 15 14 41 41 H 0.97002 * 120.00591 * 179.97438 * 22 21 19 42 42 H 1.08993 * 110.36653 * 142.96718 * 27 18 17 43 43 H 1.09000 * 110.36514 * 265.29420 * 27 18 17 44 44 H 0.96699 * 113.99283 * 67.95536 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.1080 0.0000 4 1 1.9530 2.0191 0.0006 5 6 3.6208 0.7583 -0.0006 6 6 4.7991 1.4980 -0.0004 7 6 6.0160 0.8522 -0.0006 8 6 6.0810 -0.5338 -0.0016 9 6 4.9256 -1.2837 -0.0018 10 6 3.6884 -0.6440 -0.0005 11 6 2.2915 -1.1155 -0.0005 12 6 1.8347 -2.5119 -0.0016 13 8 1.6460 -3.0911 1.0516 14 7 1.6245 -3.1511 -1.1694 15 6 1.1685 -4.5434 -1.1706 16 1 0.5029 -4.7304 -0.3279 17 6 2.3699 -5.5115 -1.1427 18 7 2.0466 -6.6344 -2.0349 19 6 2.8624 -7.7009 -2.3035 20 1 3.8371 -7.7647 -1.8428 21 6 2.4369 -8.6995 -3.1688 22 7 1.2493 -8.6216 -3.7306 23 14 3.5501 -10.1540 -3.5356 24 1 3.2890 -11.2373 -2.5541 25 1 3.2770 -10.6527 -4.9075 26 1 4.9695 -9.7284 -3.4371 27 6 0.6981 -6.4224 -2.5919 28 6 0.4682 -4.8905 -2.5109 29 1 -0.5950 -4.6538 -2.4690 30 8 1.0970 -4.2211 -3.6057 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 4.7598 2.5773 0.0008 35 1 6.9282 1.4304 0.0041 36 1 7.0419 -1.0268 -0.0013 37 1 4.9787 -2.3624 -0.0021 38 1 1.7752 -2.6894 -2.0090 39 1 3.2653 -5.0016 -1.4982 40 1 2.5292 -5.8755 -0.1277 41 1 0.9522 -9.3192 -4.3355 42 1 0.6584 -6.7587 -3.6279 43 1 -0.0464 -6.9471 -1.9931 44 1 0.6936 -4.4075 -4.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083622743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:28 Heat of formation + Delta-G solvation = 4.830805 kcal Electronic energy + Delta-G solvation = -27990.121197 eV Core-core repulsion = 24101.644473 eV Total energy + Delta-G solvation = -3888.476725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59528 -39.29528 -37.67799 -37.15744 -34.68624 -33.80337 -32.42328 -31.51630 -31.25605 -29.59332 -28.47686 -27.33580 -26.66835 -24.54577 -22.91674 -22.34383 -21.41143 -20.53966 -19.87944 -19.32719 -17.99006 -17.24075 -16.70093 -16.53780 -16.22752 -15.45693 -15.21797 -14.90844 -14.74290 -14.47559 -14.13059 -13.97552 -13.74556 -13.64145 -13.21004 -12.98608 -12.92420 -12.77967 -12.55480 -12.41660 -11.75016 -11.62869 -11.58264 -11.29072 -11.09503 -11.02778 -10.82435 -10.57698 -10.32494 -10.04763 -9.82818 -9.80041 -9.61511 -9.19115 -8.66340 -8.58565 -8.35165 -7.80569 -6.80819 -5.66019 -3.05383 0.94128 1.47489 2.28343 2.74692 2.87363 3.42205 3.47143 3.48878 3.61847 3.80721 4.40808 4.51321 4.57448 4.65939 4.90272 4.91724 5.05446 5.14638 5.23727 5.32715 5.38056 5.39078 5.42818 5.51972 5.59481 5.69339 5.71944 5.78471 5.95054 5.97643 6.10756 6.30159 6.33303 6.46817 6.51065 6.57823 6.64430 6.76643 6.97546 7.02839 7.25084 7.29756 7.60331 7.75495 7.95019 8.16496 8.35112 8.58844 9.21881 9.82936 10.46589 11.39180 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.003140 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.916339 B = 8915.282982 C = 9981.927247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 N -0.582 5.582 4 H 0.416 0.584 5 C 0.091 3.909 6 C -0.129 4.129 7 C -0.101 4.101 8 C -0.140 4.140 9 C -0.068 4.068 10 C -0.070 4.070 11 C -0.214 4.214 12 C 0.590 3.410 13 O -0.541 6.541 14 N -0.698 5.698 15 C 0.141 3.859 16 H 0.100 0.900 17 C 0.131 3.869 18 N -0.596 5.596 19 C -0.214 4.214 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.927 5.927 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.128 3.872 28 C 0.067 3.933 29 H 0.058 0.942 30 O -0.560 6.560 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.409 0.591 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.022 0.978 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 23.130 3.985 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.014 3.986 3 N -0.185 5.185 4 H 0.253 0.747 5 C -0.014 4.014 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.159 4.159 9 C -0.087 4.087 10 C -0.075 4.075 11 C -0.225 4.225 12 C 0.375 3.625 13 O -0.419 6.419 14 N -0.349 5.349 15 C 0.036 3.964 16 H 0.118 0.882 17 C 0.004 3.996 18 N -0.322 5.322 19 C -0.343 4.343 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.747 3.253 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.002 3.998 28 C 0.007 3.993 29 H 0.076 0.924 30 O -0.366 6.366 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.244 0.756 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.133 0.867 43 H 0.039 0.961 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.015 22.833 5.095 23.394 hybrid contribution 0.156 -0.362 -0.945 1.024 sum 0.171 22.471 4.149 22.852 Atomic orbital electron populations 1.20596 0.87005 1.04360 1.03785 1.20226 0.93304 0.84954 1.00109 1.41357 1.04157 1.08070 1.64897 0.74688 1.18143 0.84286 0.93856 1.05118 1.19975 0.89647 0.98779 1.06554 1.20792 0.96530 0.94549 1.00155 1.20933 0.98026 0.93761 1.03192 1.20599 0.90316 1.00155 0.97624 1.18766 0.92058 0.91676 1.04985 1.19764 0.91999 0.92457 1.18256 1.17306 0.76684 0.84640 0.83909 1.90804 1.51712 1.67819 1.31519 1.45885 1.67199 1.13282 1.08514 1.22159 0.96841 0.80435 0.96952 0.88193 1.21595 0.94918 0.88911 0.94159 1.44280 1.15343 1.21727 1.50890 1.19109 0.97026 0.96672 1.21462 0.90411 1.24746 0.97167 0.98963 0.99924 1.69715 1.18529 1.34500 1.34956 0.86038 0.79651 0.82331 0.77301 1.21658 1.21701 1.20696 1.22630 0.86410 0.87581 1.03189 1.23623 0.93723 0.96251 0.85711 0.92390 1.86261 1.61303 1.71348 1.17682 0.89672 0.89206 0.90785 0.86254 0.85678 0.85692 0.85677 0.75557 0.95242 0.95413 0.93785 0.86736 0.96065 0.77441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.20 36.01 0.37 -0.45 16 2 C 0.13 1.41 7.12 -81.66 -0.58 0.83 16 3 N -0.58 -5.46 5.99 -6.78 -0.04 -5.50 16 4 H 0.42 2.35 8.96 -40.82 -0.37 1.98 16 5 C 0.09 1.07 7.26 -83.97 -0.61 0.46 16 6 C -0.13 -1.26 10.07 -39.43 -0.40 -1.65 16 7 C -0.10 -0.98 10.01 -39.57 -0.40 -1.38 16 8 C -0.14 -1.58 10.03 -39.57 -0.40 -1.98 16 9 C -0.07 -0.95 10.09 -39.37 -0.40 -1.35 16 10 C -0.07 -1.01 6.36 -104.95 -0.67 -1.68 16 11 C -0.21 -3.15 6.02 -103.31 -0.62 -3.77 16 12 C 0.59 10.17 7.16 -12.75 -0.09 10.08 16 13 O -0.54 -11.25 16.79 5.22 0.09 -11.16 16 14 N -0.70 -11.65 5.08 -53.26 -0.27 -11.93 16 15 C 0.14 2.70 3.15 -66.09 -0.21 2.49 16 16 H 0.10 1.93 7.62 -51.93 -0.40 1.54 16 17 C 0.13 3.00 7.00 -3.06 -0.02 2.98 16 18 N -0.60 -15.58 3.40 -169.94 -0.58 -16.16 16 19 C -0.21 -6.10 10.27 -15.06 -0.15 -6.25 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 22 N -0.93 -26.63 10.09 55.49 0.56 -26.07 16 23 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.13 3.01 5.63 -2.41 -0.01 2.99 16 28 C 0.07 1.23 4.31 -24.47 -0.11 1.13 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 O -0.56 -9.65 12.23 -35.23 -0.43 -10.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.87 7.85 -51.92 -0.41 0.46 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.41 6.42 7.56 -40.82 -0.31 6.12 16 39 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.12 2.97 5.87 -51.93 -0.30 2.67 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.38 5.22 9.12 45.56 0.42 5.64 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -34.99 368.69 -9.67 -44.65 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.14 Total: 11.44 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -4.39 Total: 1.98 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.33 Total: -59.66 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.34 Total: -21.24 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.99 -9.67 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083622743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.482 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds