Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38938 * 119.67661 * 2 1 4 4 C 1.36440 * 120.61420 * 180.30230 * 3 2 1 5 5 C 1.40104 * 119.82731 * 359.68312 * 4 3 2 6 6 C 1.41593 * 133.37596 * 180.02562 * 5 4 3 7 7 C 1.35865 * 107.72826 * 179.97438 * 6 5 4 8 8 C 1.47054 * 125.43021 * 179.97438 * 7 6 5 9 9 O 1.21648 * 120.00078 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00359 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.63997 * 36.68444 * 11 10 8 13 13 C 1.54322 * 110.71917 * 273.54080 * 11 10 8 14 14 N 1.47018 * 107.27144 * 219.44109 * 13 11 10 15 15 C 1.36947 * 125.64943 * 178.97823 * 14 13 11 16 16 H 1.07998 * 119.99690 * 349.94662 * 15 14 13 17 17 C 1.38809 * 119.99896 * 169.94391 * 15 14 13 18 18 N 1.31619 * 120.00417 * 350.42281 * 17 15 14 19 19 Si 1.86798 * 119.99701 * 170.42076 * 17 15 14 20 20 H 1.48496 * 109.47315 * 94.13930 * 19 17 15 21 21 H 1.48502 * 109.47159 * 214.14326 * 19 17 15 22 22 H 1.48503 * 109.47179 * 334.14013 * 19 17 15 23 23 C 1.47423 * 108.70542 * 358.94604 * 14 13 11 24 24 C 1.54907 * 104.83437 * 24.12322 * 23 14 13 25 25 H 1.08990 * 111.00936 * 204.91954 * 24 23 14 26 26 O 1.42899 * 111.00109 * 81.06185 * 24 23 14 27 27 N 1.38148 * 109.13478 * 0.02562 * 7 6 5 28 28 H 0.97004 * 125.59857 * 179.97438 * 27 7 6 29 29 C 1.37475 * 108.79143 * 359.97438 * 27 7 6 30 30 C 1.37673 * 119.67419 * 179.68980 * 2 1 3 31 31 H 1.09003 * 109.46806 * 270.31289 * 1 2 3 32 32 H 1.09001 * 109.47079 * 30.31231 * 1 2 3 33 33 H 1.09001 * 109.47407 * 150.31031 * 1 2 3 34 34 H 1.08002 * 119.69522 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.08752 * 179.71205 * 4 3 2 36 36 H 1.08004 * 126.13371 * 0.02562 * 6 5 4 37 37 H 0.97006 * 119.99959 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.88544 * 338.86680 * 13 11 10 39 39 H 1.09007 * 109.88015 * 100.02842 * 13 11 10 40 40 H 0.96999 * 120.00282 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.36930 * 142.96547 * 23 14 13 42 42 H 1.09007 * 110.36417 * 265.17892 * 23 14 13 43 43 H 0.96701 * 113.99433 * 67.81205 * 26 24 23 44 44 H 1.08004 * 120.09746 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2071 0.0000 4 6 3.5591 1.2295 -0.0062 5 6 4.2758 0.0256 -0.0059 6 6 5.6575 -0.2835 -0.0108 7 6 5.7787 -1.6368 -0.0070 8 6 7.0482 -2.3790 -0.0106 9 8 8.1050 -1.7765 -0.0169 10 7 7.0409 -3.7267 -0.0068 11 6 8.3056 -4.4661 -0.0109 12 1 9.0531 -3.9522 0.5934 13 6 8.8149 -4.6687 -1.4535 14 7 9.3747 -6.0259 -1.5322 15 6 9.9136 -6.6033 -2.6509 16 1 9.8075 -6.1216 -3.6117 17 6 10.5963 -7.8077 -2.5499 18 7 10.8903 -8.3003 -1.3653 19 14 11.0977 -8.7295 -4.0954 20 1 12.4876 -8.3587 -4.4639 21 1 11.0251 -10.1915 -3.8453 22 1 10.1788 -8.3710 -5.2056 23 6 9.2605 -6.6620 -0.2072 24 6 8.0936 -5.9193 0.4901 25 1 8.1866 -5.9761 1.5745 26 8 6.8307 -6.4305 0.0588 27 7 4.5192 -2.2042 -0.0005 28 1 4.3284 -3.1553 0.0028 29 6 3.5808 -1.1995 0.0005 30 6 2.1886 -1.1962 0.0065 31 1 -0.3633 0.0056 1.0277 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3634 -0.8927 -0.5090 34 1 1.6446 2.1365 -0.0004 35 1 4.0851 2.1726 -0.0108 36 1 6.4695 0.4287 -0.0156 37 1 6.1982 -4.2071 -0.0014 38 1 7.9879 -4.5674 -2.1563 39 1 9.5885 -3.9349 -1.6800 40 1 11.3670 -9.1422 -1.2948 41 1 9.0264 -7.7212 -0.3137 42 1 10.1848 -6.5333 0.3563 43 1 6.6536 -7.3360 0.3481 44 1 1.6448 -2.1293 0.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083680713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = 1.303976 kcal Electronic energy + Delta-G solvation = -27234.171826 eV Core-core repulsion = 23345.542166 eV Total energy + Delta-G solvation = -3888.629659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72863 -39.61128 -38.02578 -37.27536 -34.85445 -34.16614 -32.85562 -31.78091 -30.85310 -29.66474 -28.66656 -27.45473 -26.46609 -24.61516 -23.34427 -22.17367 -21.10828 -20.74644 -20.22224 -19.78060 -18.56160 -17.34402 -16.92091 -16.73181 -15.88741 -15.43585 -15.28233 -15.10316 -14.85630 -14.40985 -14.22053 -14.07079 -14.01313 -13.66673 -13.51807 -13.20226 -13.00397 -12.83593 -12.63574 -12.41725 -11.96902 -11.92604 -11.44264 -11.40851 -11.12590 -11.06442 -10.86871 -10.72000 -10.50590 -10.20635 -10.02399 -9.98549 -9.88684 -9.37246 -8.90621 -8.66989 -8.38357 -7.90193 -6.86015 -5.81459 -3.13060 0.60461 1.41071 1.99169 2.73582 3.13532 3.34964 3.36959 3.42817 3.45223 3.66470 4.39255 4.45333 4.48001 4.62970 4.75120 4.87115 4.96698 5.13918 5.19471 5.22949 5.26155 5.31296 5.40931 5.42303 5.48450 5.60621 5.63975 5.77360 5.82022 5.88107 5.92984 6.15395 6.27463 6.28660 6.38058 6.44072 6.51304 6.67651 6.83174 6.88831 7.17967 7.21456 7.35365 7.61474 7.67860 7.96970 8.18278 8.22815 9.12192 9.73880 10.39418 11.32180 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.002337 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.363724 B =11977.020488 C =12184.592506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.111 4.111 7 C 0.024 3.976 8 C 0.577 3.423 9 O -0.523 6.523 10 N -0.704 5.704 11 C 0.144 3.856 12 H 0.105 0.895 13 C 0.131 3.869 14 N -0.595 5.595 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.066 3.934 25 H 0.062 0.938 26 O -0.564 6.564 27 N -0.577 5.577 28 H 0.419 0.581 29 C 0.116 3.884 30 C -0.134 4.134 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.156 0.844 37 H 0.403 0.597 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.253 0.747 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.380 0.620 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 13.691 7.179 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.169 4.169 4 C -0.076 4.076 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.085 4.085 8 C 0.363 3.637 9 O -0.399 6.399 10 N -0.355 5.355 11 C 0.039 3.961 12 H 0.123 0.877 13 C 0.004 3.996 14 N -0.322 5.322 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.023 3.977 24 C 0.005 3.995 25 H 0.080 0.920 26 O -0.370 6.370 27 N -0.181 5.181 28 H 0.257 0.743 29 C 0.006 3.994 30 C -0.155 4.155 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.174 0.826 37 H 0.238 0.762 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.228 0.772 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.932 14.340 6.839 24.715 hybrid contribution -0.019 -1.886 -0.547 1.964 sum -18.952 12.455 6.292 23.534 Atomic orbital electron populations 1.20788 0.90968 1.02834 1.02346 1.19594 0.95769 0.92243 0.98470 1.20504 0.93920 0.97350 1.05105 1.20388 0.93644 0.96272 0.97255 1.18207 0.93067 0.92891 1.08600 1.20906 0.95385 0.93217 1.04252 1.20269 0.84022 0.93430 1.10778 1.17252 0.87103 0.82135 0.77232 1.90858 1.30517 1.68478 1.50034 1.45744 1.10510 1.05244 1.74011 1.22206 0.85145 0.89756 0.98989 0.87736 1.21605 0.96383 0.88797 0.92811 1.44266 1.70740 1.09368 1.07813 1.19037 1.27240 1.03068 0.85859 0.90547 1.24801 0.99616 0.99020 0.97012 1.69910 1.44784 1.21234 1.21111 0.86087 0.78359 0.79098 0.82138 1.21537 1.21609 1.20604 1.22069 0.92499 0.97459 0.85654 1.23622 0.86059 0.93276 0.96498 0.91977 1.86225 1.36366 1.34116 1.80255 1.41986 1.04120 1.08210 1.63828 0.74270 1.18292 0.90769 0.87713 1.02673 1.19891 0.89716 0.98395 1.07487 0.91102 0.91373 0.91573 0.85979 0.85697 0.82640 0.76234 0.95303 0.95076 0.93666 0.90390 0.94375 0.77247 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.99 36.01 0.36 -0.29 16 2 C -0.06 -0.51 5.88 -104.57 -0.61 -1.12 16 3 C -0.15 -1.29 9.61 -39.97 -0.38 -1.67 16 4 C -0.06 -0.56 10.06 -39.53 -0.40 -0.95 16 5 C -0.12 -1.47 6.16 -106.93 -0.66 -2.13 16 6 C -0.11 -1.44 10.53 -39.15 -0.41 -1.86 16 7 C 0.02 0.33 6.97 -82.30 -0.57 -0.24 16 8 C 0.58 9.21 7.80 -12.69 -0.10 9.11 16 9 O -0.52 -10.05 16.56 5.23 0.09 -9.96 16 10 N -0.70 -10.72 5.08 -53.22 -0.27 -10.99 16 11 C 0.14 2.60 3.12 -66.10 -0.21 2.39 16 12 H 0.10 1.93 7.69 -51.93 -0.40 1.53 16 13 C 0.13 2.89 6.99 -3.07 -0.02 2.87 16 14 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 15 C -0.22 -6.28 10.24 -15.06 -0.15 -6.43 16 16 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 17 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 18 N -0.92 -26.47 10.68 55.49 0.59 -25.87 16 19 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 3.39 5.16 -2.53 -0.01 3.38 16 24 C 0.07 1.14 4.28 -24.58 -0.11 1.03 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -8.78 12.23 -35.23 -0.43 -9.22 16 27 N -0.58 -6.39 6.07 -7.36 -0.04 -6.44 16 28 H 0.42 3.67 8.12 -40.82 -0.33 3.34 16 29 C 0.12 1.32 7.25 -83.98 -0.61 0.71 16 30 C -0.13 -1.27 9.71 -39.42 -0.38 -1.65 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.40 5.33 6.62 -40.82 -0.27 5.06 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 41 H 0.08 1.94 6.94 -51.93 -0.36 1.58 16 42 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 43 H 0.38 4.60 9.12 45.56 0.42 5.02 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -33.57 367.61 -9.62 -43.19 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.13 Total: 9.70 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -4.37 Total: 2.82 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.30 Total: -59.07 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.34 Total: -19.18 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.57 -9.62 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083680713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.496 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds