Wall clock time and date at job start Tue Mar 31 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38942 * 119.69060 * 2 1 4 4 C 1.37666 * 120.64658 * 179.97438 * 3 2 1 5 5 C 1.39223 * 119.81121 * 0.02562 * 4 3 2 6 6 N 1.37482 * 133.18431 * 180.35553 * 5 4 3 7 7 H 0.97001 * 125.60451 * 359.97438 * 6 5 4 8 8 C 1.38147 * 108.79164 * 180.11250 * 6 5 4 9 9 C 1.47059 * 125.42994 * 179.82742 * 8 6 5 10 10 O 1.21642 * 120.00098 * 179.69807 * 9 8 6 11 11 N 1.34780 * 120.00002 * 359.69523 * 9 8 6 12 12 C 1.46501 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.91568 * 37.46076 * 12 11 9 14 14 C 1.54910 * 111.00799 * 273.55084 * 12 11 9 15 15 N 1.47424 * 104.82982 * 204.91683 * 14 12 11 16 16 C 1.36937 * 125.64591 * 204.08979 * 15 14 12 17 17 H 1.07997 * 120.00208 * 354.87875 * 16 15 14 18 18 C 1.38813 * 119.99793 * 174.87413 * 16 15 14 19 19 N 1.31616 * 120.00159 * 7.07449 * 18 16 15 20 20 Si 1.86806 * 119.99591 * 187.06666 * 18 16 15 21 21 H 1.48498 * 109.47072 * 94.99524 * 20 18 16 22 22 H 1.48506 * 109.46700 * 214.99071 * 20 18 16 23 23 H 1.48492 * 109.47457 * 334.99038 * 20 18 16 24 24 C 1.47023 * 108.70421 * 24.13280 * 15 14 12 25 25 C 1.54319 * 107.40260 * 358.85973 * 24 15 14 26 26 H 1.09005 * 110.72187 * 219.52548 * 25 24 15 27 27 O 1.42905 * 110.72133 * 96.25001 * 25 24 15 28 28 C 1.35864 * 109.13852 * 359.56985 * 8 6 5 29 29 C 1.40854 * 119.43105 * 0.02562 * 5 4 3 30 30 C 1.36435 * 119.69217 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46656 * 269.97250 * 1 2 3 32 32 H 1.09004 * 109.47376 * 29.96911 * 1 2 3 33 33 H 1.08995 * 109.47395 * 149.97297 * 1 2 3 34 34 H 1.08000 * 119.67740 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.09752 * 179.97438 * 4 3 2 36 36 H 0.96999 * 119.99746 * 0.02562 * 11 9 8 37 37 H 1.08996 * 110.36192 * 86.07954 * 14 12 11 38 38 H 1.09004 * 110.36490 * 323.75640 * 14 12 11 39 39 H 0.96998 * 119.99800 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.88170 * 118.35905 * 24 15 14 41 41 H 1.08996 * 109.87898 * 239.36310 * 24 15 14 42 42 H 0.96698 * 113.99781 * 61.44860 * 27 25 24 43 43 H 1.08003 * 126.13448 * 180.26092 * 28 8 6 44 44 H 1.08004 * 120.08078 * 359.97309 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.2070 0.0000 4 6 3.5717 1.2300 0.0005 5 6 4.2839 0.0337 0.0005 6 7 5.6266 -0.2619 0.0072 7 1 6.3476 0.3868 0.0132 8 6 5.7800 -1.6348 0.0008 9 6 7.0655 -2.3490 0.0013 10 8 7.0856 -3.5653 0.0009 11 7 8.2214 -1.6560 0.0022 12 6 9.5021 -2.3675 0.0032 13 1 9.4502 -3.2630 -0.6160 14 6 9.9429 -2.7154 1.4470 15 7 11.4103 -2.8373 1.3744 16 6 12.1946 -3.5595 2.2338 17 1 11.7534 -4.0348 3.0974 18 6 13.5566 -3.6807 1.9948 19 7 14.1186 -2.9906 1.0252 20 14 14.5918 -4.8232 3.0496 21 1 14.7162 -6.1411 2.3766 22 1 15.9420 -4.2345 3.2387 23 1 13.9403 -5.0022 4.3719 24 6 11.8923 -2.0541 0.2272 25 6 10.6570 -1.4379 -0.4626 26 1 10.7658 -1.4676 -1.5468 27 8 10.4412 -0.0992 -0.0112 28 6 4.5538 -2.2201 -0.0002 29 6 3.5839 -1.1886 -0.0006 30 6 2.1829 -1.1852 -0.0005 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6450 2.1363 -0.0004 35 1 4.0977 2.1733 0.0001 36 1 8.2054 -0.6861 0.0029 37 1 9.4989 -3.6597 1.7619 38 1 9.6620 -1.9158 2.1325 39 1 15.0704 -3.0750 0.8585 40 1 12.5578 -1.2627 0.5720 41 1 12.4203 -2.7046 -0.4700 42 1 11.1710 0.5042 -0.2068 43 1 4.3548 -3.2816 -0.0007 44 1 1.6391 -2.1184 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083689624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:57 Heat of formation + Delta-G solvation = 1.231074 kcal Electronic energy + Delta-G solvation = -27161.599967 eV Core-core repulsion = 23272.967147 eV Total energy + Delta-G solvation = -3888.632821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73308 -39.59403 -38.04645 -37.29948 -34.92392 -34.15551 -32.48167 -31.93960 -31.40947 -29.29728 -28.52760 -27.34712 -26.47185 -24.73455 -23.62218 -21.98716 -21.10146 -20.63359 -20.19456 -19.90211 -18.58576 -17.48475 -17.03815 -16.84389 -15.55501 -15.31341 -15.27206 -15.09263 -14.82600 -14.32128 -14.26781 -14.05842 -13.97308 -13.72568 -13.53879 -13.25259 -13.05413 -12.78150 -12.65506 -12.39346 -12.32643 -11.86532 -11.40128 -11.33267 -11.11468 -11.00694 -10.89486 -10.59450 -10.51262 -10.20797 -10.07400 -10.00393 -9.87744 -9.43176 -8.88198 -8.67823 -8.30624 -7.94102 -6.92734 -5.80762 -3.12611 0.61268 1.37317 2.01046 2.73721 3.13031 3.35150 3.38185 3.43818 3.45328 3.65266 4.37161 4.44967 4.47766 4.66442 4.72951 4.85740 4.99464 5.13646 5.18631 5.19340 5.30361 5.37816 5.43217 5.45401 5.50535 5.63258 5.65510 5.78533 5.81769 5.85701 5.97143 6.12614 6.16400 6.32943 6.44958 6.46001 6.51102 6.61744 6.82249 6.88151 7.17821 7.24783 7.37755 7.61153 7.70143 7.96184 8.14270 8.23482 9.12943 9.73143 10.37365 11.32029 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.002260 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.579741 B =12385.038070 C =12872.284733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.577 5.577 7 H 0.419 0.581 8 C 0.027 3.973 9 C 0.577 3.423 10 O -0.521 6.521 11 N -0.704 5.704 12 C 0.140 3.860 13 H 0.106 0.894 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.226 4.226 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.063 0.937 27 O -0.571 6.571 28 C -0.113 4.113 29 C -0.114 4.114 30 C -0.062 4.062 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.402 0.598 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.382 0.618 43 H 0.156 0.844 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.322 10.784 -5.680 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.003 4.003 6 N -0.181 5.181 7 H 0.257 0.743 8 C -0.082 4.082 9 C 0.362 3.638 10 O -0.397 6.397 11 N -0.355 5.355 12 C 0.034 3.966 13 H 0.124 0.876 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.027 3.973 25 C 0.008 3.992 26 H 0.081 0.919 27 O -0.378 6.378 28 C -0.140 4.140 29 C -0.119 4.119 30 C -0.081 4.081 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.230 0.770 43 H 0.174 0.826 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.431 9.622 -5.445 25.008 hybrid contribution 1.698 0.548 0.351 1.819 sum -20.733 10.170 -5.094 23.649 Atomic orbital electron populations 1.20720 0.91160 1.02529 1.02089 1.19363 0.96037 0.92815 1.03870 1.20734 0.92829 0.97600 0.99715 1.20053 0.93830 0.94879 1.06091 1.18331 0.82996 0.95575 1.03392 1.41988 1.06173 1.06162 1.63810 0.74276 1.20292 0.95357 0.82120 1.10464 1.17245 0.82200 0.87013 0.77328 1.90865 1.86602 1.12335 1.49879 1.45683 1.05332 1.10414 1.74057 1.22472 0.79711 0.94546 0.99828 0.87609 1.21839 0.86239 0.98747 0.92778 1.44280 0.99618 1.56893 1.31901 1.19099 0.89338 1.23648 1.03281 0.90177 1.24819 0.96637 1.00117 0.98848 1.69916 1.10687 1.43290 1.33377 0.86059 0.79589 0.80475 0.79448 1.21491 1.21767 1.20555 1.21889 0.90462 0.95301 0.89636 1.23570 0.96791 0.82022 0.96820 0.91870 1.86203 1.47157 1.20149 1.84251 1.20901 0.89195 0.99402 1.04526 1.18186 0.93579 0.92286 1.07827 1.20251 0.91449 0.97867 0.98506 0.91517 0.91808 0.91728 0.85681 0.85952 0.76327 0.93382 0.95731 0.93676 0.93039 0.92333 0.77018 0.82628 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.99 36.01 0.36 -0.29 16 2 C -0.12 -1.03 5.84 -105.01 -0.61 -1.65 16 3 C -0.09 -0.74 9.66 -39.53 -0.38 -1.12 16 4 C -0.13 -1.16 10.08 -39.42 -0.40 -1.56 16 5 C 0.11 1.19 7.25 -83.98 -0.61 0.59 16 6 N -0.58 -6.27 6.07 -7.36 -0.04 -6.31 16 7 H 0.42 3.54 8.12 -40.82 -0.33 3.21 16 8 C 0.03 0.37 6.97 -82.29 -0.57 -0.21 16 9 C 0.58 9.19 7.80 -12.68 -0.10 9.09 16 10 O -0.52 -10.09 16.59 5.24 0.09 -10.00 16 11 N -0.70 -10.64 5.18 -52.78 -0.27 -10.91 16 12 C 0.14 2.54 3.20 -65.64 -0.21 2.33 16 13 H 0.11 2.04 7.73 -51.93 -0.40 1.63 16 14 C 0.13 2.87 6.92 -2.53 -0.02 2.85 16 15 N -0.60 -15.28 3.39 -170.08 -0.58 -15.86 16 16 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 19 N -0.92 -26.50 10.36 55.49 0.57 -25.92 16 20 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.49 5.14 -3.07 -0.02 3.48 16 25 C 0.07 1.18 4.22 -24.76 -0.10 1.07 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 O -0.57 -8.58 12.15 -35.23 -0.43 -9.01 16 28 C -0.11 -1.48 10.53 -39.15 -0.41 -1.89 16 29 C -0.11 -1.36 6.16 -106.93 -0.66 -2.02 16 30 C -0.06 -0.62 9.68 -39.53 -0.38 -1.00 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.40 5.20 6.62 -40.82 -0.27 4.93 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 41 H 0.06 1.48 7.29 -51.93 -0.38 1.10 16 42 H 0.38 4.46 9.09 45.56 0.41 4.87 16 43 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -33.31 367.27 -9.64 -42.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.13 Total: 9.58 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -4.37 Total: 2.88 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.32 Total: -59.00 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.34 Total: -19.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.31 -9.64 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083689624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.183 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds