Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36550 * 125.07701 * 2 1 4 4 C 1.34547 * 109.89652 * 180.02562 * 3 2 1 5 5 C 1.45988 * 107.01195 * 0.02562 * 4 3 2 6 6 C 1.37799 * 125.07376 * 180.02562 * 2 1 3 7 7 C 1.38990 * 133.37050 * 359.97438 * 6 2 1 8 8 C 1.38056 * 120.26686 * 179.97438 * 7 6 2 9 9 C 1.38276 * 120.88349 * 359.78484 * 8 7 6 10 10 C 1.39314 * 120.20064 * 0.45393 * 9 8 7 11 11 C 1.47374 * 120.34472 * 179.80795 * 10 9 8 12 12 O 1.21608 * 120.00220 * 179.71756 * 11 10 9 13 13 N 1.34778 * 119.99804 * 359.72171 * 11 10 9 14 14 C 1.46505 * 120.00074 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.91310 * 37.44311 * 14 13 11 16 16 C 1.54914 * 111.00202 * 273.54598 * 14 13 11 17 17 N 1.47426 * 104.82992 * 204.91694 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.08004 * 120.00261 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00145 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99550 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47257 * 90.00190 * 22 20 18 24 24 H 1.48507 * 109.47158 * 210.00140 * 22 20 18 25 25 H 1.48503 * 109.47321 * 329.99764 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 H 1.09002 * 110.72265 * 219.52294 * 27 26 17 29 29 O 1.42895 * 110.72044 * 96.24103 * 27 26 17 30 30 H 1.09007 * 109.46717 * 89.97370 * 1 2 3 31 31 H 1.09000 * 109.47547 * 209.97344 * 1 2 3 32 32 H 1.08996 * 109.46861 * 329.97816 * 1 2 3 33 33 H 1.08000 * 125.04849 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.48899 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.86035 * 359.97438 * 7 6 2 36 36 H 1.08000 * 119.55465 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.89965 * 180.23973 * 9 8 7 38 38 H 0.96998 * 120.00184 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.37121 * 86.07429 * 16 14 13 40 40 H 1.09003 * 110.36718 * 323.75334 * 16 14 13 41 41 H 0.97004 * 119.99606 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 43 43 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 44 44 H 0.96706 * 113.99347 * 61.46045 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7652 -0.0006 5 6 3.5949 -0.6940 -0.0016 6 6 2.2568 -1.1278 -0.0005 7 6 1.9784 -2.4895 -0.0007 8 6 3.0072 -3.4101 -0.0017 9 6 4.3274 -2.9990 -0.0071 10 6 4.6387 -1.6411 -0.0021 11 6 6.0447 -1.1995 -0.0035 12 8 6.3092 -0.0125 -0.0043 13 7 7.0373 -2.1112 -0.0042 14 6 8.4351 -1.6722 -0.0051 15 1 8.5645 -0.7844 0.6139 16 6 8.9371 -1.4205 -1.4488 17 7 10.3989 -1.5968 -1.3762 18 6 11.3127 -1.0475 -2.2355 19 1 10.9793 -0.4238 -3.0519 20 6 12.6674 -1.2922 -2.0575 21 7 13.0736 -2.0526 -1.0629 22 14 13.9138 -0.5434 -3.2301 23 1 14.3399 0.7838 -2.7183 24 1 15.0956 -1.4369 -3.3332 25 1 13.2970 -0.3820 -4.5713 26 6 10.7132 -2.4605 -0.2287 27 6 9.3791 -2.8153 0.4611 28 1 9.4915 -2.8077 1.5453 29 8 8.8981 -4.0829 0.0100 30 1 -0.3633 0.0005 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.8826 2.1332 -0.0004 34 1 4.3955 1.4350 -0.0003 35 1 0.9531 -2.8287 0.0001 36 1 2.7777 -4.4654 -0.0014 37 1 5.1198 -3.7329 -0.0118 38 1 6.8263 -3.0579 -0.0033 39 1 8.6924 -0.4063 -1.7642 40 1 8.5010 -2.1473 -2.1342 41 1 14.0203 -2.2239 -0.9387 42 1 11.2057 -3.3699 -0.5732 43 1 11.3613 -1.9294 0.4685 44 1 9.4914 -4.8210 0.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083865021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = 19.580651 kcal Electronic energy + Delta-G solvation = -27646.530524 eV Core-core repulsion = 23758.693401 eV Total energy + Delta-G solvation = -3887.837123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47416 -39.51027 -37.87398 -36.80163 -34.78258 -33.89753 -32.96214 -31.76184 -30.56908 -29.12981 -28.34961 -26.97775 -26.37345 -24.59964 -23.47467 -21.71874 -21.38389 -20.49750 -19.99592 -19.59913 -17.64355 -17.14803 -16.78312 -16.57499 -16.16482 -15.59222 -15.29999 -15.18462 -14.75539 -14.47832 -14.07019 -13.98058 -13.90312 -13.30654 -13.07932 -13.01329 -12.87013 -12.66208 -12.52501 -12.48052 -12.17283 -11.77288 -11.49244 -11.42402 -11.23629 -10.91786 -10.79325 -10.46542 -10.33116 -10.08633 -9.77090 -9.70256 -9.52240 -9.27777 -8.64722 -8.55910 -8.34102 -7.73041 -6.82828 -5.71144 -3.03553 0.63857 1.43837 2.60187 2.63174 3.08851 3.42639 3.45080 3.48368 3.51132 4.00921 4.42836 4.48159 4.54682 4.63615 4.68964 4.79902 4.84477 4.93404 5.05524 5.15348 5.33270 5.35686 5.43446 5.47285 5.57919 5.66558 5.77284 5.82107 5.94295 6.04767 6.14653 6.28635 6.29113 6.31626 6.57741 6.67047 6.71830 6.76683 7.01912 7.05434 7.13130 7.37326 7.48247 7.76713 7.94702 8.12329 8.24044 8.60150 9.22146 9.82253 10.47120 11.41287 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002640 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.086585 B =10603.435763 C =11430.428619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.492 5.492 3 C 0.042 3.958 4 C -0.180 4.180 5 C -0.059 4.059 6 C 0.085 3.915 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.109 4.109 10 C -0.081 4.081 11 C 0.553 3.447 12 O -0.535 6.535 13 N -0.704 5.704 14 C 0.141 3.859 15 H 0.102 0.898 16 C 0.132 3.868 17 N -0.601 5.601 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.154 3.846 27 C 0.068 3.932 28 H 0.062 0.938 29 O -0.568 6.568 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.405 0.595 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.560 -2.235 5.847 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.176 5.176 3 C -0.082 4.082 4 C -0.205 4.205 5 C -0.064 4.064 6 C -0.020 4.020 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.129 4.129 10 C -0.085 4.085 11 C 0.340 3.660 12 O -0.413 6.413 13 N -0.356 5.356 14 C 0.035 3.965 15 H 0.120 0.880 16 C 0.004 3.996 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.080 0.920 29 O -0.375 6.375 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.186 0.814 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.242 0.758 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -25.961 -0.974 5.605 26.578 hybrid contribution 1.043 -0.450 -0.420 1.211 sum -24.918 -1.425 5.185 25.492 Atomic orbital electron populations 1.21899 0.77299 1.04027 1.02850 1.43734 1.05720 1.04281 1.63890 1.21939 0.90506 0.91022 1.04709 1.21983 0.95973 0.93132 1.09378 1.18977 0.90727 0.93677 1.03057 1.18165 0.89982 0.88384 1.05488 1.20102 0.99541 0.89116 1.04161 1.20690 0.91764 0.99105 1.01213 1.21176 0.97006 0.94262 1.00472 1.19436 0.92206 0.92762 1.04049 1.18147 0.84880 0.86061 0.76887 1.90750 1.84390 1.16432 1.49686 1.45708 1.05649 1.10051 1.74179 1.22371 0.78392 0.96294 0.99407 0.87994 1.21840 0.85842 0.98776 0.93110 1.44287 0.99604 1.57150 1.31733 1.19104 0.86307 1.23773 1.05792 0.90271 1.24788 0.96837 1.00264 0.98756 1.69914 1.14182 1.41830 1.31666 0.86067 0.80929 0.78322 0.80171 1.21570 1.21716 1.20682 1.21868 0.89999 0.95844 0.89458 1.23553 0.95988 0.82996 0.96693 0.92024 1.86233 1.50192 1.16874 1.84186 0.91415 0.90293 0.89960 0.81350 0.82354 0.86256 0.85160 0.85226 0.75804 0.93625 0.95645 0.93773 0.92955 0.92628 0.77223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.02 59.85 0.66 1.08 16 2 N -0.49 -4.84 3.17 -121.81 -0.39 -5.23 16 3 C 0.04 0.44 11.29 -16.76 -0.19 0.25 16 4 C -0.18 -2.50 10.24 -37.78 -0.39 -2.88 16 5 C -0.06 -0.86 6.15 -104.85 -0.64 -1.51 16 6 C 0.09 1.03 6.80 -83.99 -0.57 0.45 16 7 C -0.11 -1.07 9.93 -39.37 -0.39 -1.46 16 8 C -0.11 -1.07 9.99 -39.63 -0.40 -1.46 16 9 C -0.11 -1.30 9.53 -39.17 -0.37 -1.67 16 10 C -0.08 -1.21 5.89 -104.76 -0.62 -1.83 16 11 C 0.55 9.73 7.76 -12.54 -0.10 9.63 16 12 O -0.53 -11.01 14.83 5.27 0.08 -10.94 16 13 N -0.70 -11.78 5.13 -52.68 -0.27 -12.05 16 14 C 0.14 2.74 3.20 -65.64 -0.21 2.53 16 15 H 0.10 2.10 7.73 -51.93 -0.40 1.69 16 16 C 0.13 3.01 6.92 -2.53 -0.02 3.00 16 17 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 18 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 19 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.93 -27.14 10.31 55.49 0.57 -26.57 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.15 3.66 5.13 -3.07 -0.02 3.64 16 27 C 0.07 1.24 4.22 -24.76 -0.10 1.14 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 O -0.57 -9.20 12.15 -35.23 -0.43 -9.63 16 30 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 33 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.16 2.36 7.16 -52.48 -0.38 1.99 16 35 H 0.12 0.83 8.05 -52.49 -0.42 0.41 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.33 6.40 -52.49 -0.34 1.00 16 38 H 0.41 5.96 5.60 -40.82 -0.23 5.74 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.06 1.45 7.37 -51.93 -0.38 1.07 16 44 H 0.38 4.81 9.09 45.56 0.41 5.23 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -35.51 363.60 -9.21 -44.72 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.04 Total: 9.12 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -3.61 Total: 4.00 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.66 Total: -60.24 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.35 Total: -20.56 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.51 -9.21 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083865021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.298 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds