Wall clock time and date at job start Tue Mar 31 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36550 * 125.07701 * 2 1 4 4 C 1.34547 * 109.89652 * 180.02562 * 3 2 1 5 5 C 1.45988 * 107.01195 * 0.02562 * 4 3 2 6 6 C 1.37799 * 125.07376 * 180.02562 * 2 1 3 7 7 C 1.38990 * 133.37050 * 359.97438 * 6 2 1 8 8 C 1.38056 * 120.26686 * 179.97438 * 7 6 2 9 9 C 1.38276 * 120.88349 * 359.78484 * 8 7 6 10 10 C 1.39314 * 120.20064 * 0.45393 * 9 8 7 11 11 C 1.47374 * 120.34472 * 179.80795 * 10 9 8 12 12 O 1.21608 * 120.00220 * 179.71756 * 11 10 9 13 13 N 1.34778 * 119.99804 * 359.72171 * 11 10 9 14 14 C 1.46505 * 120.00074 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.91310 * 37.44311 * 14 13 11 16 16 C 1.54914 * 111.00202 * 273.54598 * 14 13 11 17 17 N 1.47426 * 104.82992 * 204.91694 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.08004 * 120.00261 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00145 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99550 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47257 * 90.00190 * 22 20 18 24 24 H 1.48507 * 109.47158 * 210.00140 * 22 20 18 25 25 H 1.48503 * 109.47321 * 329.99764 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 H 1.09002 * 110.72265 * 219.52294 * 27 26 17 29 29 O 1.42895 * 110.72044 * 96.24103 * 27 26 17 30 30 H 1.09007 * 109.46717 * 89.97370 * 1 2 3 31 31 H 1.09000 * 109.47547 * 209.97344 * 1 2 3 32 32 H 1.08996 * 109.46861 * 329.97816 * 1 2 3 33 33 H 1.08000 * 125.04849 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.48899 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.86035 * 359.97438 * 7 6 2 36 36 H 1.08000 * 119.55465 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.89965 * 180.23973 * 9 8 7 38 38 H 0.96998 * 120.00184 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.37121 * 86.07429 * 16 14 13 40 40 H 1.09003 * 110.36718 * 323.75334 * 16 14 13 41 41 H 0.97004 * 119.99606 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 43 43 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 44 44 H 0.96706 * 113.99347 * 61.46045 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7652 -0.0006 5 6 3.5949 -0.6940 -0.0016 6 6 2.2568 -1.1278 -0.0005 7 6 1.9784 -2.4895 -0.0007 8 6 3.0072 -3.4101 -0.0017 9 6 4.3274 -2.9990 -0.0071 10 6 4.6387 -1.6411 -0.0021 11 6 6.0447 -1.1995 -0.0035 12 8 6.3092 -0.0125 -0.0043 13 7 7.0373 -2.1112 -0.0042 14 6 8.4351 -1.6722 -0.0051 15 1 8.5645 -0.7844 0.6139 16 6 8.9371 -1.4205 -1.4488 17 7 10.3989 -1.5968 -1.3762 18 6 11.3127 -1.0475 -2.2355 19 1 10.9793 -0.4238 -3.0519 20 6 12.6674 -1.2922 -2.0575 21 7 13.0736 -2.0526 -1.0629 22 14 13.9138 -0.5434 -3.2301 23 1 14.3399 0.7838 -2.7183 24 1 15.0956 -1.4369 -3.3332 25 1 13.2970 -0.3820 -4.5713 26 6 10.7132 -2.4605 -0.2287 27 6 9.3791 -2.8153 0.4611 28 1 9.4915 -2.8077 1.5453 29 8 8.8981 -4.0829 0.0100 30 1 -0.3633 0.0005 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 1.8826 2.1332 -0.0004 34 1 4.3955 1.4350 -0.0003 35 1 0.9531 -2.8287 0.0001 36 1 2.7777 -4.4654 -0.0014 37 1 5.1198 -3.7329 -0.0118 38 1 6.8263 -3.0579 -0.0033 39 1 8.6924 -0.4063 -1.7642 40 1 8.5010 -2.1473 -2.1342 41 1 14.0203 -2.2239 -0.9387 42 1 11.2057 -3.3699 -0.5732 43 1 11.3613 -1.9294 0.4685 44 1 9.4914 -4.8210 0.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083865021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:25 Heat of formation + Delta-G solvation = -6.395805 kcal Electronic energy + Delta-G solvation = -27647.656948 eV Core-core repulsion = 23758.693401 eV Total energy + Delta-G solvation = -3888.963547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32418 -40.92240 -39.40556 -37.73924 -36.45855 -35.44986 -33.75596 -33.63274 -31.64895 -30.16527 -29.93799 -28.70953 -27.03081 -26.48665 -24.63202 -22.66850 -22.53326 -22.18319 -21.50479 -20.83014 -19.24042 -18.37318 -18.28538 -17.64699 -17.08855 -16.89776 -16.60229 -16.31876 -16.06519 -15.89281 -15.68391 -15.38409 -14.90710 -14.72408 -14.47607 -14.31691 -14.06042 -13.94199 -13.63267 -13.60181 -13.19428 -13.09892 -12.83832 -12.74754 -12.61045 -12.41401 -12.29162 -12.17271 -12.11326 -11.90852 -11.86497 -10.92851 -10.82721 -10.77701 -10.61045 -10.09220 -9.18073 -8.96237 -8.58742 -7.89601 -5.25519 -0.30580 0.59894 1.44471 1.46861 1.55439 1.68531 1.90906 1.96517 2.10999 2.48465 2.98800 3.16771 3.29084 3.56564 3.71219 3.83268 3.91766 3.94410 3.96647 3.99068 4.19649 4.26466 4.28409 4.45766 4.50594 4.56430 4.66458 4.67233 4.76882 4.81788 4.86064 4.97946 5.03745 5.13186 5.34583 5.42335 5.44613 5.46701 5.50326 5.63549 5.74823 5.75304 6.13501 6.19643 6.42241 6.62666 6.87846 7.05828 7.27600 7.69160 8.33474 9.20439 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002640 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.086585 B =10603.435763 C =11430.428619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.487 5.487 3 C 0.072 3.928 4 C -0.239 4.239 5 C -0.091 4.091 6 C 0.069 3.931 7 C -0.090 4.090 8 C -0.111 4.111 9 C -0.100 4.100 10 C -0.122 4.122 11 C 0.550 3.450 12 O -0.577 6.577 13 N -0.692 5.692 14 C 0.153 3.847 15 H 0.088 0.912 16 C 0.134 3.866 17 N -0.621 5.621 18 C -0.248 4.248 19 H 0.074 0.926 20 C -0.060 4.060 21 N -0.947 5.947 22 Si 0.981 3.019 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.273 1.273 26 C 0.160 3.840 27 C 0.094 3.906 28 H 0.094 0.906 29 O -0.564 6.564 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.207 0.793 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.417 0.583 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.026 0.974 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.929 -3.848 6.103 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.170 5.170 3 C -0.054 4.054 4 C -0.263 4.263 5 C -0.097 4.097 6 C -0.037 4.037 7 C -0.111 4.111 8 C -0.130 4.130 9 C -0.120 4.120 10 C -0.126 4.126 11 C 0.340 3.660 12 O -0.458 6.458 13 N -0.345 5.345 14 C 0.046 3.954 15 H 0.106 0.894 16 C 0.007 3.993 17 N -0.348 5.348 18 C -0.377 4.377 19 H 0.092 0.908 20 C -0.253 4.253 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.198 1.198 26 C 0.034 3.966 27 C 0.034 3.966 28 H 0.111 0.889 29 O -0.373 6.373 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.223 0.777 34 H 0.147 0.853 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.256 0.744 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -29.385 -2.647 5.868 30.082 hybrid contribution 1.939 0.051 -0.523 2.008 sum -27.447 -2.596 5.346 28.082 Atomic orbital electron populations 1.22283 0.74114 1.06061 1.04317 1.44078 1.07477 1.03290 1.62128 1.22380 0.89392 0.92727 1.00918 1.21901 0.97062 0.93262 1.14122 1.19324 0.92358 0.94064 1.03918 1.18450 0.89167 0.89905 1.06221 1.20606 1.01534 0.87960 1.00961 1.21129 0.90553 1.01073 1.00260 1.21438 0.98807 0.92970 0.98786 1.19330 0.90298 0.94483 1.08473 1.18736 0.86246 0.85482 0.75576 1.90719 1.85176 1.18253 1.51687 1.45514 1.04232 1.10622 1.74134 1.21976 0.80268 0.96580 0.96601 0.89426 1.21840 0.84561 0.97390 0.95489 1.44560 1.00644 1.57507 1.32071 1.19403 0.87413 1.24348 1.06500 0.90767 1.25620 0.98417 1.00818 1.00487 1.70108 1.14258 1.42469 1.32768 0.85044 0.78268 0.77381 0.78403 1.21198 1.21357 1.19802 1.21742 0.92525 0.93937 0.88350 1.23176 0.92277 0.83585 0.97596 0.88869 1.86196 1.50345 1.16463 1.84255 0.90135 0.88628 0.87746 0.77675 0.85277 0.82395 0.81364 0.83920 0.74383 0.95719 0.95951 0.94036 0.95200 0.95578 0.74978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.02 127.77 1.41 1.86 16 2 N -0.49 -8.33 3.17 -539.30 -1.71 -10.05 16 3 C 0.07 1.42 11.29 83.11 0.94 2.36 16 4 C -0.24 -7.06 10.24 23.43 0.24 -6.82 16 5 C -0.09 -2.74 6.15 -20.02 -0.12 -2.87 16 6 C 0.07 1.52 6.80 38.98 0.27 1.79 16 7 C -0.09 -1.44 9.93 22.41 0.22 -1.22 16 8 C -0.11 -1.79 9.99 22.24 0.22 -1.56 16 9 C -0.10 -2.23 9.53 22.54 0.21 -2.02 16 10 C -0.12 -3.75 5.89 -19.95 -0.12 -3.87 16 11 C 0.55 20.42 7.76 86.65 0.67 21.10 16 12 O -0.58 -25.89 14.83 -4.06 -0.06 -25.95 16 13 N -0.69 -23.62 5.13 -438.84 -2.25 -25.87 16 14 C 0.15 6.12 3.20 46.47 0.15 6.27 16 15 H 0.09 3.80 7.73 -2.39 -0.02 3.78 16 16 C 0.13 6.45 6.92 86.86 0.60 7.05 16 17 N -0.62 -34.06 3.39 -691.97 -2.35 -36.41 16 18 C -0.25 -14.74 10.28 84.03 0.86 -13.87 16 19 H 0.07 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 21 N -0.95 -56.80 10.31 21.65 0.22 -56.58 16 22 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.16 7.84 5.13 86.73 0.44 8.28 16 27 C 0.09 3.44 4.22 31.87 0.13 3.57 16 28 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 29 O -0.56 -17.34 12.15 -148.98 -1.81 -19.15 16 30 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.10 0.32 8.09 -2.39 -0.02 0.30 16 32 H 0.10 0.23 8.13 -2.39 -0.02 0.21 16 33 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.13 4.42 7.16 -2.91 -0.02 4.40 16 35 H 0.16 1.28 8.05 -2.91 -0.02 1.26 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.14 2.64 6.40 -2.91 -0.02 2.63 16 38 H 0.42 11.97 5.60 -92.71 -0.52 11.46 16 39 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.03 1.58 7.42 -2.39 -0.02 1.56 16 43 H 0.03 1.42 7.37 -2.39 -0.02 1.40 16 44 H 0.40 9.26 9.09 -74.05 -0.67 8.59 16 Total: -1.00 -83.17 363.60 0.52 -82.64 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.15 Total: 25.25 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.60 Total: 16.99 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -6.09 Total: -128.91 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.87 Total: -45.10 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -83.17 0.52 -82.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083865021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.247 kcal (2) G-P(sol) polarization free energy of solvation -83.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds