Wall clock time and date at job start Tue Mar 31 2020 04:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38747 * 119.84743 * 2 1 4 4 C 1.37768 * 120.63381 * 179.97438 * 3 2 1 5 5 C 1.39119 * 119.92912 * 0.02618 * 4 3 2 6 6 N 1.37965 * 133.19047 * 179.97438 * 5 4 3 7 7 H 0.96998 * 124.77916 * 359.96860 * 6 5 4 8 8 C 1.35471 * 110.42729 * 180.02562 * 6 5 4 9 9 C 1.36371 * 109.77038 * 0.02562 * 8 6 5 10 10 C 1.46906 * 126.76973 * 179.97438 * 9 8 6 11 11 O 1.21671 * 120.00659 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99807 * 0.02778 * 10 9 8 13 13 C 1.46505 * 120.00074 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46906 * 120.00302 * 21 19 17 24 24 H 1.48501 * 109.47001 * 239.99832 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 16 28 28 O 1.42895 * 110.72044 * 96.24103 * 26 25 16 29 29 C 1.40390 * 119.36295 * 0.30329 * 5 4 3 30 30 C 1.37754 * 119.84795 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47193 * 89.99704 * 1 2 3 32 32 H 1.08996 * 109.47143 * 209.99658 * 1 2 3 33 33 H 1.09006 * 109.47020 * 329.99540 * 1 2 3 34 34 H 1.08000 * 119.68702 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.03752 * 180.02562 * 4 3 2 36 36 H 1.07996 * 125.11407 * 179.97438 * 8 6 5 37 37 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 38 38 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 39 39 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 40 40 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 42 42 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 43 43 H 0.96706 * 113.99347 * 61.46045 * 28 26 25 44 44 H 1.08005 * 120.16568 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2034 0.0000 4 6 3.5751 1.2223 0.0005 5 6 4.2857 0.0263 0.0005 6 7 5.6328 -0.2717 0.0005 7 1 6.3451 0.3867 0.0001 8 6 5.8202 -1.6134 -0.0001 9 6 4.6130 -2.2478 -0.0010 10 6 4.3820 -3.6986 -0.0024 11 8 3.2458 -4.1338 -0.0036 12 7 5.4288 -4.5476 -0.0023 13 6 5.1985 -5.9944 -0.0031 14 1 4.3393 -6.2513 -0.6227 15 6 5.0221 -6.5294 1.4400 16 7 5.4098 -7.9498 1.3660 17 6 4.9993 -8.9349 2.2240 18 1 4.3333 -8.6970 3.0404 19 6 5.4391 -10.2392 2.0447 20 7 6.2511 -10.5290 1.0502 21 14 4.8797 -11.5828 3.2157 22 1 3.9767 -11.0014 4.2411 23 1 4.1540 -12.6316 2.4551 24 1 6.0634 -12.1838 3.8812 25 6 6.3107 -8.1334 0.2187 26 6 6.4672 -6.7610 -0.4695 27 1 6.4767 -6.8722 -1.5538 28 8 7.6510 -6.1007 -0.0172 29 6 3.5854 -1.1904 -0.0065 30 6 2.1926 -1.1948 0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6500 2.1343 0.0004 35 1 4.1029 2.1647 0.0009 36 1 6.7811 -2.1064 -0.0006 37 1 6.3346 -4.2007 -0.0016 38 1 3.9829 -6.4357 1.7551 39 1 5.6772 -5.9926 2.1263 40 1 6.5588 -11.4404 0.9251 41 1 7.2820 -8.4883 0.5632 42 1 5.8801 -8.8513 -0.4795 43 1 8.4678 -6.5798 -0.2133 44 1 1.6528 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084094405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:01 Heat of formation + Delta-G solvation = 0.820173 kcal Electronic energy + Delta-G solvation = -27457.646961 eV Core-core repulsion = 23568.996322 eV Total energy + Delta-G solvation = -3888.650639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55540 -39.27056 -37.71716 -37.46287 -34.80850 -33.83698 -32.34554 -31.62553 -31.46016 -29.35656 -28.23618 -26.89361 -26.54523 -24.54299 -22.94546 -22.76587 -21.23379 -20.50567 -20.02952 -19.37678 -18.32959 -17.25759 -16.78763 -16.34958 -16.08885 -15.37595 -15.04653 -14.97770 -14.71709 -14.41789 -14.16512 -13.90023 -13.86323 -13.57542 -13.48559 -13.13374 -12.78535 -12.67092 -12.50755 -12.25012 -12.16661 -11.70177 -11.37604 -11.26292 -11.05558 -10.92620 -10.82674 -10.48549 -10.34320 -10.07600 -9.80548 -9.79082 -9.59862 -9.30806 -8.66500 -8.57554 -8.32535 -7.84535 -6.84297 -5.72761 -3.05127 0.87833 1.40055 1.99211 2.79471 3.41075 3.45700 3.48456 3.50833 3.52903 3.89598 4.47658 4.51502 4.56785 4.61209 4.82799 4.88702 5.01609 5.18089 5.33334 5.34488 5.40636 5.47092 5.51179 5.54530 5.60088 5.69860 5.76808 5.88801 5.91969 5.99875 6.15211 6.20939 6.27449 6.40093 6.54748 6.60970 6.70465 6.75352 6.96747 7.01953 7.18188 7.35281 7.46667 7.75736 7.96495 8.08835 8.22438 8.64607 9.20719 9.80821 10.45470 11.39739 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002632 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.576696 B =10637.071133 C =11649.487829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 C -0.099 4.099 4 C -0.127 4.127 5 C 0.079 3.921 6 N -0.581 5.581 7 H 0.418 0.582 8 C 0.106 3.894 9 C -0.219 4.219 10 C 0.583 3.417 11 O -0.543 6.543 12 N -0.708 5.708 13 C 0.143 3.857 14 H 0.102 0.898 15 C 0.131 3.869 16 N -0.601 5.601 17 C -0.221 4.221 18 H 0.080 0.920 19 C -0.011 4.011 20 N -0.927 5.927 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.062 0.938 28 O -0.569 6.569 29 C -0.059 4.059 30 C -0.061 4.061 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.180 0.820 37 H 0.402 0.598 38 H 0.046 0.954 39 H 0.025 0.975 40 H 0.251 0.749 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.379 0.621 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 24.375 -5.770 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.147 4.147 5 C -0.026 4.026 6 N -0.182 5.182 7 H 0.256 0.744 8 C -0.027 4.027 9 C -0.230 4.230 10 C 0.371 3.629 11 O -0.422 6.422 12 N -0.359 5.359 13 C 0.037 3.963 14 H 0.120 0.880 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.349 4.349 18 H 0.098 0.902 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.080 0.920 28 O -0.376 6.376 29 C -0.063 4.063 30 C -0.080 4.080 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.197 0.803 37 H 0.237 0.763 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.227 0.773 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.116 24.325 -5.528 24.970 hybrid contribution 1.199 -0.791 0.400 1.491 sum 0.082 23.533 -5.128 24.086 Atomic orbital electron populations 1.20723 0.91049 1.02663 1.02146 1.19726 0.96125 0.92587 1.02868 1.20676 0.92822 0.97572 1.00780 1.19946 0.93803 0.94543 1.06409 1.18242 0.83052 0.95389 1.05889 1.41488 1.06224 1.06823 1.63680 0.74433 1.22145 0.99251 0.82591 0.98665 1.20148 0.92042 0.92724 1.18063 1.17238 0.84947 0.84459 0.76241 1.90774 1.22275 1.78471 1.50644 1.45587 1.08954 1.06308 1.75006 1.22344 0.96637 0.77971 0.99341 0.88011 1.21844 0.98230 0.86348 0.93165 1.44298 1.54355 1.02381 1.31769 1.19155 1.23121 0.86841 1.05792 0.90203 1.24789 0.99874 0.97260 0.98749 1.69923 1.37491 1.18546 1.31637 0.85994 0.77737 0.81861 0.79926 1.20441 1.21741 1.21810 1.21866 0.95910 0.89921 0.89496 1.23555 0.84278 0.94718 0.96657 0.92049 1.86220 1.16265 1.50914 1.84159 1.18740 0.93036 0.90596 1.03929 1.20619 0.91853 0.98271 0.97216 0.91435 0.91421 0.91831 0.85757 0.86210 0.80274 0.76282 0.93615 0.95700 0.93826 0.92985 0.92629 0.77258 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 36.01 0.36 -0.58 16 2 C -0.11 -1.25 5.88 -104.61 -0.62 -1.86 16 3 C -0.10 -0.94 9.66 -39.57 -0.38 -1.32 16 4 C -0.13 -1.18 10.07 -39.43 -0.40 -1.58 16 5 C 0.08 0.88 7.26 -83.97 -0.61 0.27 16 6 N -0.58 -4.82 5.99 -10.49 -0.06 -4.88 16 7 H 0.42 1.89 8.96 -40.82 -0.37 1.52 16 8 C 0.11 1.03 11.33 -16.62 -0.19 0.84 16 9 C -0.22 -3.06 6.27 -103.31 -0.65 -3.71 16 10 C 0.58 9.94 7.79 -12.75 -0.10 9.84 16 11 O -0.54 -11.26 15.90 5.21 0.08 -11.18 16 12 N -0.71 -11.23 5.17 -52.82 -0.27 -11.51 16 13 C 0.14 2.71 3.20 -65.64 -0.21 2.50 16 14 H 0.10 2.07 7.73 -51.93 -0.40 1.67 16 15 C 0.13 2.97 6.92 -2.53 -0.02 2.95 16 16 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 17 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.93 -26.98 10.31 55.49 0.57 -26.40 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.15 3.60 5.13 -3.07 -0.02 3.59 16 26 C 0.07 1.21 4.22 -24.76 -0.10 1.11 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.57 -8.81 12.15 -35.23 -0.43 -9.24 16 29 C -0.06 -0.82 6.27 -104.95 -0.66 -1.48 16 30 C -0.06 -0.85 9.49 -39.37 -0.37 -1.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.18 1.13 7.38 -52.49 -0.39 0.75 16 37 H 0.40 5.37 6.45 -40.82 -0.26 5.11 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.06 1.44 7.37 -51.93 -0.38 1.06 16 43 H 0.38 4.59 9.09 45.56 0.41 5.00 16 44 H 0.13 2.03 7.45 -52.48 -0.39 1.64 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -35.65 365.89 -9.49 -45.14 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.08 Total: 8.96 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.21 Total: 2.47 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.34 Total: -59.04 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.35 Total: -20.42 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.65 -9.49 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084094405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.955 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds