Wall clock time and date at job start Tue Mar 31 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47069 * 240.00072 * 3 2 1 5 5 H 1.48495 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47127 * 120.00082 * 3 2 1 7 7 C 1.38812 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00574 * 195.74763 * 7 2 1 9 9 N 1.36938 * 119.99682 * 15.75640 * 7 2 1 10 10 C 1.46542 * 119.73815 * 205.64698 * 9 7 2 11 11 C 1.53152 * 108.24829 * 236.39698 * 10 9 7 12 12 C 1.53061 * 109.21190 * 301.58502 * 11 10 9 13 13 H 1.09001 * 113.84717 * 274.48032 * 12 11 10 14 14 C 1.54083 * 111.39294 * 142.39922 * 12 11 10 15 15 N 1.47290 * 87.60751 * 273.97381 * 14 12 11 16 16 C 1.34776 * 136.54219 * 151.36377 * 15 14 12 17 17 O 1.21546 * 119.99895 * 185.60638 * 16 15 14 18 18 C 1.47863 * 120.00034 * 5.60770 * 16 15 14 19 19 C 1.39705 * 120.07467 * 6.74937 * 18 16 15 20 20 C 1.38060 * 120.14302 * 180.29755 * 19 18 16 21 21 C 1.38094 * 120.29547 * 359.44991 * 20 19 18 22 22 C 1.39671 * 120.14725 * 0.55388 * 21 20 19 23 23 C 1.47859 * 120.07284 * 179.70395 * 22 21 20 24 24 N 1.34773 * 120.00095 * 0.02562 * 23 22 21 25 25 O 1.21548 * 119.99321 * 180.02562 * 23 22 21 26 26 C 1.39297 * 120.06855 * 186.77713 * 18 16 15 27 27 C 1.46459 * 86.91167 * 331.62224 * 15 14 12 28 28 H 1.09006 * 111.44173 * 276.12991 * 27 15 14 29 29 C 1.45698 * 119.74091 * 25.61954 * 9 7 2 30 30 H 0.96998 * 120.00284 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.71201 * 116.70688 * 10 9 7 32 32 H 1.08995 * 109.73937 * 356.10113 * 10 9 7 33 33 H 1.09000 * 109.50907 * 181.66714 * 11 10 9 34 34 H 1.09002 * 109.55891 * 61.53241 * 11 10 9 35 35 H 1.08995 * 113.53171 * 159.28810 * 14 12 11 36 36 H 1.09008 * 113.58788 * 28.66435 * 14 12 11 37 37 H 1.08004 * 119.92527 * 0.02705 * 19 18 16 38 38 H 1.07992 * 119.84814 * 179.70373 * 20 19 18 39 39 H 1.08004 * 119.92671 * 180.27728 * 21 20 19 40 40 H 0.96998 * 120.00357 * 0.02562 * 24 23 22 41 41 H 0.96996 * 119.99319 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.15214 * 359.94848 * 26 18 16 43 43 H 1.09009 * 108.78907 * 260.92605 * 29 9 7 44 44 H 1.08995 * 108.78869 * 19.24793 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0599 -1.2195 0.2544 9 7 1.3642 -2.3659 -0.3210 10 6 1.8665 -3.6424 0.1944 11 6 2.1383 -4.5667 -0.9961 12 6 0.8456 -4.7533 -1.7943 13 1 0.2044 -5.5489 -1.4149 14 6 1.1229 -4.8056 -3.3090 15 7 1.0505 -3.3345 -3.3106 16 6 1.5840 -2.3295 -4.0330 17 8 1.3920 -1.1755 -3.7031 18 6 2.4027 -2.6307 -5.2268 19 6 2.5088 -3.9446 -5.6896 20 6 3.2778 -4.2283 -6.8006 21 6 3.9377 -3.2155 -7.4682 22 6 3.8402 -1.8976 -7.0161 23 6 4.5527 -0.8153 -7.7283 24 7 5.2968 -1.1000 -8.8154 25 8 4.4673 0.3310 -7.3334 26 6 3.0704 -1.6051 -5.8921 27 6 0.1422 -3.4570 -2.1683 28 1 -0.8830 -3.6376 -2.4919 29 6 0.1825 -2.3251 -1.1723 30 1 -0.4850 0.8400 -0.0004 31 1 1.1202 -4.0943 0.8477 32 1 2.7897 -3.4775 0.7499 33 1 2.4854 -5.5344 -0.6339 34 1 2.9006 -4.1226 -1.6363 35 1 0.3263 -5.2811 -3.8811 36 1 2.1109 -5.1929 -3.5585 37 1 1.9916 -4.7407 -5.1746 38 1 3.3604 -5.2463 -7.1514 39 1 4.5341 -3.4436 -8.3393 40 1 5.3647 -2.0147 -9.1308 41 1 5.7639 -0.3899 -9.2828 42 1 2.9914 -0.5876 -5.5387 43 1 -0.7058 -2.3772 -0.5426 44 1 0.1728 -1.3796 -1.7144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084458803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:52 Heat of formation + Delta-G solvation = 37.118186 kcal Electronic energy + Delta-G solvation = -28716.126819 eV Core-core repulsion = 24829.050180 eV Total energy + Delta-G solvation = -3887.076639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.84992 -40.08776 -38.50348 -37.17263 -35.22228 -34.08272 -32.21821 -31.45175 -31.17752 -30.12408 -28.75126 -27.00647 -24.52924 -23.95625 -23.72089 -22.38012 -21.42019 -20.82525 -19.87759 -18.58827 -17.69306 -17.09417 -16.72312 -16.33707 -15.86421 -15.76191 -15.43082 -14.93060 -14.50764 -14.39639 -14.17876 -13.90960 -13.72165 -13.57155 -13.30713 -13.24977 -12.71302 -12.45317 -12.38173 -12.05258 -11.92284 -11.46119 -11.42848 -11.03926 -10.60758 -10.55332 -10.46027 -10.27941 -10.15791 -9.97004 -9.85176 -9.72428 -9.57446 -9.20616 -9.14436 -8.99345 -8.24050 -8.14133 -6.53467 -5.59728 -3.01178 0.52192 0.98527 2.53590 3.09429 3.29740 3.31831 3.54399 3.60864 3.67496 3.94887 4.40696 4.49509 4.56862 4.65063 4.69818 4.82092 5.00613 5.15425 5.21729 5.32401 5.37856 5.49165 5.52476 5.65137 5.69733 5.71805 5.87235 5.93764 6.03908 6.13815 6.15206 6.23871 6.32015 6.39613 6.48942 6.52750 6.59592 6.65424 6.81055 7.02052 7.05176 7.51629 7.80416 7.99356 8.02584 8.27511 8.63468 8.71618 9.41814 10.06178 10.53254 11.48755 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.004581 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.239996 B = 6111.378745 C = 7935.416737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.015 3.985 3 Si 0.899 3.101 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.584 5.584 10 C 0.149 3.851 11 C -0.116 4.116 12 C -0.111 4.111 13 H 0.093 0.907 14 C 0.086 3.914 15 N -0.627 5.627 16 C 0.578 3.422 17 O -0.500 6.500 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.137 4.137 21 C -0.072 4.072 22 C -0.150 4.150 23 C 0.564 3.436 24 N -0.853 5.853 25 O -0.530 6.530 26 C -0.003 4.003 27 C 0.121 3.879 28 H 0.073 0.927 29 C 0.166 3.834 30 H 0.252 0.748 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.399 0.601 41 H 0.405 0.595 42 H 0.151 0.849 43 H 0.031 0.969 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 -16.112 -16.938 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.729 3.271 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.130 4.130 13 H 0.112 0.888 14 C -0.037 4.037 15 N -0.363 5.363 16 C 0.366 3.634 17 O -0.374 6.374 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.155 4.155 21 C -0.091 4.091 22 C -0.153 4.153 23 C 0.350 3.650 24 N -0.418 5.418 25 O -0.406 6.406 26 C -0.022 4.022 27 C 0.018 3.982 28 H 0.091 0.909 29 C 0.040 3.960 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.229 0.771 41 H 0.236 0.764 42 H 0.168 0.832 43 H 0.049 0.951 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.748 -14.418 -16.481 22.639 hybrid contribution 0.661 0.523 -0.665 1.074 sum 6.410 -13.895 -17.145 22.981 Atomic orbital electron populations 1.69993 1.05244 1.25403 1.54207 1.24878 0.95185 0.98082 1.00250 0.86432 0.79087 0.83705 0.77905 1.20822 1.21699 1.21222 1.19016 0.91982 0.84798 1.42526 0.92150 1.43435 1.31824 1.01494 1.53843 1.20713 0.97423 0.87234 0.92442 1.21860 0.95045 0.99376 0.99313 1.22707 0.98984 0.97708 0.93617 0.88840 1.23510 1.01133 0.81744 0.97330 1.49260 1.48105 1.05640 1.33338 1.17489 0.80092 0.84120 0.81662 1.90909 1.59165 1.18920 1.68406 1.20146 1.00849 0.93882 0.97519 1.22066 0.95835 0.96193 0.95061 1.21027 0.98619 0.99444 0.96361 1.21384 0.97340 0.91760 0.98573 1.19788 1.03062 0.93526 0.98917 1.18246 0.78422 0.88284 0.80084 1.43718 1.53058 1.13600 1.31413 1.90875 1.62351 1.21452 1.65961 1.21473 0.89470 1.00666 0.90623 1.22530 0.92198 0.96938 0.86580 0.90878 1.20162 0.89339 0.96286 0.90189 0.93797 0.96298 0.92619 0.92667 0.92115 0.90185 0.90589 0.84078 0.84874 0.85470 0.77128 0.76421 0.83162 0.95140 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 11.05 55.49 0.61 -27.33 16 2 C 0.01 0.44 4.91 -17.43 -0.09 0.36 16 3 Si 0.90 24.20 29.58 -169.99 -5.03 19.18 16 4 H -0.28 -7.82 7.11 56.52 0.40 -7.42 16 5 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.25 -7.43 9.51 -15.06 -0.14 -7.58 16 8 H 0.06 1.75 7.84 -52.49 -0.41 1.34 16 9 N -0.58 -15.09 3.02 -175.06 -0.53 -15.61 16 10 C 0.15 3.08 6.46 -3.94 -0.03 3.05 16 11 C -0.12 -1.90 5.69 -26.62 -0.15 -2.05 16 12 C -0.11 -1.61 4.57 -90.46 -0.41 -2.03 16 13 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.09 1.05 5.52 -11.55 -0.06 0.99 16 15 N -0.63 -11.18 3.31 -189.19 -0.63 -11.80 16 16 C 0.58 11.77 7.96 -12.32 -0.10 11.67 16 17 O -0.50 -12.95 15.53 5.33 0.08 -12.87 16 18 C -0.12 -1.94 5.87 -105.02 -0.62 -2.56 16 19 C -0.07 -0.84 9.15 -39.10 -0.36 -1.20 16 20 C -0.14 -1.18 10.02 -39.70 -0.40 -1.58 16 21 C -0.07 -0.63 9.54 -39.10 -0.37 -1.00 16 22 C -0.15 -1.91 5.87 -105.02 -0.62 -2.52 16 23 C 0.56 7.32 8.05 -12.32 -0.10 7.22 16 24 N -0.85 -6.35 8.82 30.53 0.27 -6.08 16 25 O -0.53 -9.51 17.18 5.32 0.09 -9.42 16 26 C 0.00 -0.04 9.14 -38.78 -0.35 -0.40 16 27 C 0.12 2.27 3.99 -77.98 -0.31 1.96 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 C 0.17 4.15 4.56 -5.57 -0.03 4.12 16 30 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.80 6.62 -51.92 -0.34 0.46 16 37 H 0.14 1.36 4.20 -52.48 -0.22 1.14 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.58 6.39 -52.48 -0.34 0.25 16 40 H 0.40 1.59 6.85 -40.82 -0.28 1.31 16 41 H 0.40 2.50 8.93 -40.82 -0.36 2.13 16 42 H 0.15 2.92 7.25 -52.49 -0.38 2.54 16 43 H 0.03 0.82 7.99 -51.92 -0.41 0.40 16 44 H 0.10 3.00 5.00 -51.93 -0.26 2.74 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -39.14 354.33 -9.41 -48.55 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.49 Total: 1.57 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -4.13 Total: 8.47 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.27 Total: -60.82 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.03 Total: 19.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.14 -9.41 -48.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084458803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.672 kcal (2) G-P(sol) polarization free energy of solvation -39.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds