Wall clock time and date at job start Tue Mar 31 2020 04:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47069 * 240.00072 * 3 2 1 5 5 H 1.48495 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47127 * 120.00082 * 3 2 1 7 7 C 1.38812 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00574 * 195.74763 * 7 2 1 9 9 N 1.36938 * 119.99682 * 15.75640 * 7 2 1 10 10 C 1.46542 * 119.73815 * 205.64698 * 9 7 2 11 11 C 1.53152 * 108.24829 * 236.39698 * 10 9 7 12 12 C 1.53061 * 109.21190 * 301.58502 * 11 10 9 13 13 H 1.09001 * 113.84717 * 274.48032 * 12 11 10 14 14 C 1.54083 * 111.39294 * 142.39922 * 12 11 10 15 15 N 1.47290 * 87.60751 * 273.97381 * 14 12 11 16 16 C 1.34776 * 136.54219 * 151.36377 * 15 14 12 17 17 O 1.21546 * 119.99895 * 185.60638 * 16 15 14 18 18 C 1.47863 * 120.00034 * 5.60770 * 16 15 14 19 19 C 1.39705 * 120.07467 * 6.74937 * 18 16 15 20 20 C 1.38060 * 120.14302 * 180.29755 * 19 18 16 21 21 C 1.38094 * 120.29547 * 359.44991 * 20 19 18 22 22 C 1.39671 * 120.14725 * 0.55388 * 21 20 19 23 23 C 1.47859 * 120.07284 * 179.70395 * 22 21 20 24 24 N 1.34773 * 120.00095 * 0.02562 * 23 22 21 25 25 O 1.21548 * 119.99321 * 180.02562 * 23 22 21 26 26 C 1.39297 * 120.06855 * 186.77713 * 18 16 15 27 27 C 1.46459 * 86.91167 * 331.62224 * 15 14 12 28 28 H 1.09006 * 111.44173 * 276.12991 * 27 15 14 29 29 C 1.45698 * 119.74091 * 25.61954 * 9 7 2 30 30 H 0.96998 * 120.00284 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.71201 * 116.70688 * 10 9 7 32 32 H 1.08995 * 109.73937 * 356.10113 * 10 9 7 33 33 H 1.09000 * 109.50907 * 181.66714 * 11 10 9 34 34 H 1.09002 * 109.55891 * 61.53241 * 11 10 9 35 35 H 1.08995 * 113.53171 * 159.28810 * 14 12 11 36 36 H 1.09008 * 113.58788 * 28.66435 * 14 12 11 37 37 H 1.08004 * 119.92527 * 0.02705 * 19 18 16 38 38 H 1.07992 * 119.84814 * 179.70373 * 20 19 18 39 39 H 1.08004 * 119.92671 * 180.27728 * 21 20 19 40 40 H 0.96998 * 120.00357 * 0.02562 * 24 23 22 41 41 H 0.96996 * 119.99319 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.15214 * 359.94848 * 26 18 16 43 43 H 1.09009 * 108.78907 * 260.92605 * 29 9 7 44 44 H 1.08995 * 108.78869 * 19.24793 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0599 -1.2195 0.2544 9 7 1.3642 -2.3659 -0.3210 10 6 1.8665 -3.6424 0.1944 11 6 2.1383 -4.5667 -0.9961 12 6 0.8456 -4.7533 -1.7943 13 1 0.2044 -5.5489 -1.4149 14 6 1.1229 -4.8056 -3.3090 15 7 1.0505 -3.3345 -3.3106 16 6 1.5840 -2.3295 -4.0330 17 8 1.3920 -1.1755 -3.7031 18 6 2.4027 -2.6307 -5.2268 19 6 2.5088 -3.9446 -5.6896 20 6 3.2778 -4.2283 -6.8006 21 6 3.9377 -3.2155 -7.4682 22 6 3.8402 -1.8976 -7.0161 23 6 4.5527 -0.8153 -7.7283 24 7 5.2968 -1.1000 -8.8154 25 8 4.4673 0.3310 -7.3334 26 6 3.0704 -1.6051 -5.8921 27 6 0.1422 -3.4570 -2.1683 28 1 -0.8830 -3.6376 -2.4919 29 6 0.1825 -2.3251 -1.1723 30 1 -0.4850 0.8400 -0.0004 31 1 1.1202 -4.0943 0.8477 32 1 2.7897 -3.4775 0.7499 33 1 2.4854 -5.5344 -0.6339 34 1 2.9006 -4.1226 -1.6363 35 1 0.3263 -5.2811 -3.8811 36 1 2.1109 -5.1929 -3.5585 37 1 1.9916 -4.7407 -5.1746 38 1 3.3604 -5.2463 -7.1514 39 1 4.5341 -3.4436 -8.3393 40 1 5.3647 -2.0147 -9.1308 41 1 5.7639 -0.3899 -9.2828 42 1 2.9914 -0.5876 -5.5387 43 1 -0.7058 -2.3772 -0.5426 44 1 0.1728 -1.3796 -1.7144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084458803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:51 Heat of formation + Delta-G solvation = 4.319364 kcal Electronic energy + Delta-G solvation = -28717.549083 eV Core-core repulsion = 24829.050180 eV Total energy + Delta-G solvation = -3888.498902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14848 -41.13978 -39.69981 -38.53161 -37.10175 -35.02898 -34.04703 -32.60318 -32.12533 -31.92382 -30.21649 -28.67212 -25.89393 -25.31242 -25.13504 -23.71897 -22.76487 -22.02979 -21.11156 -19.76544 -19.29745 -18.29564 -17.94248 -17.46579 -17.35913 -17.11870 -16.82341 -16.26712 -15.97812 -15.68370 -15.48526 -15.37349 -15.16615 -14.87143 -14.80652 -14.57359 -14.26845 -14.02230 -13.58223 -13.46716 -13.16812 -13.01662 -12.80936 -12.69914 -12.52071 -12.29306 -12.24042 -12.00899 -11.73688 -11.49014 -11.36902 -11.02552 -10.84351 -10.72916 -10.41132 -10.14969 -10.10608 -9.52210 -8.68281 -7.88984 -5.30903 -0.39026 -0.04066 1.27704 1.37233 1.41401 1.56024 1.85727 2.09139 2.42110 2.44502 2.84833 3.27009 3.40158 3.41428 3.71571 3.73880 3.81162 3.95111 4.01233 4.07143 4.24255 4.30780 4.40039 4.50202 4.52801 4.65932 4.69603 4.76123 4.81784 4.87165 4.94922 5.07161 5.10596 5.14790 5.22467 5.25687 5.33435 5.43796 5.53830 5.69798 5.74150 5.80395 5.80847 6.35342 6.37165 6.91283 7.17382 7.21822 7.26983 7.95832 8.32348 9.14992 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.004581 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.239996 B = 6111.378745 C = 7935.416737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.040 4.040 3 Si 0.946 3.054 4 H -0.303 1.303 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.256 4.256 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.138 3.862 11 C -0.106 4.106 12 C -0.098 4.098 13 H 0.140 0.860 14 C 0.100 3.900 15 N -0.633 5.633 16 C 0.562 3.438 17 O -0.587 6.587 18 C -0.147 4.147 19 C -0.061 4.061 20 C -0.114 4.114 21 C -0.044 4.044 22 C -0.159 4.159 23 C 0.558 3.442 24 N -0.819 5.819 25 O -0.598 6.598 26 C -0.041 4.041 27 C 0.104 3.896 28 H 0.095 0.905 29 C 0.179 3.821 30 H 0.244 0.756 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.184 0.816 40 H 0.421 0.579 41 H 0.414 0.586 42 H 0.090 0.910 43 H -0.003 1.003 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.818 -22.867 -20.007 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.776 3.224 4 H -0.231 1.231 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.386 4.386 8 H 0.073 0.927 9 N -0.325 5.325 10 C 0.013 3.987 11 C -0.144 4.144 12 C -0.117 4.117 13 H 0.157 0.843 14 C -0.020 4.020 15 N -0.367 5.367 16 C 0.354 3.646 17 O -0.468 6.468 18 C -0.150 4.150 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.063 4.063 22 C -0.163 4.163 23 C 0.344 3.656 24 N -0.384 5.384 25 O -0.480 6.480 26 C -0.061 4.061 27 C 0.000 4.000 28 H 0.113 0.887 29 C 0.052 3.948 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.057 0.943 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.186 0.814 38 H 0.210 0.790 39 H 0.201 0.799 40 H 0.255 0.745 41 H 0.247 0.753 42 H 0.108 0.892 43 H 0.014 0.986 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.553 -21.320 -19.579 29.915 hybrid contribution 0.172 2.512 0.246 2.530 sum 7.725 -18.808 -19.332 28.057 Atomic orbital electron populations 1.70138 1.06228 1.25082 1.56168 1.25493 0.95911 1.00657 1.01450 0.85662 0.78081 0.81049 0.77650 1.23060 1.21683 1.18702 1.19301 0.91970 0.86608 1.40768 0.92661 1.43685 1.31759 1.02406 1.54658 1.20991 0.96999 0.85905 0.94797 1.21740 0.95698 1.00066 0.96940 1.22754 0.97792 0.95569 0.95585 0.84257 1.23838 1.04669 0.77740 0.95801 1.49435 1.46885 1.08265 1.32112 1.18373 0.79989 0.83535 0.82726 1.90858 1.62464 1.22515 1.70938 1.19858 1.02106 0.96233 0.96805 1.22353 0.95819 0.93859 0.95849 1.21689 0.95560 1.01863 0.93989 1.21999 0.95925 0.89192 0.99153 1.19827 1.02809 0.95717 0.97916 1.18489 0.78680 0.87445 0.80978 1.43420 1.50662 1.15271 1.29074 1.90849 1.64916 1.24089 1.68118 1.21182 0.92906 0.98529 0.93506 1.22610 0.94584 0.96765 0.86053 0.88714 1.19772 0.87794 0.96771 0.90430 0.94724 0.95215 0.93413 0.87669 0.94347 0.85328 0.87502 0.81428 0.78982 0.79879 0.74490 0.75329 0.89154 0.98559 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.15 11.05 21.65 0.24 -61.91 16 2 C -0.04 -2.55 4.91 84.86 0.42 -2.13 16 3 Si 0.95 53.47 29.58 68.60 2.03 55.50 16 4 H -0.30 -17.98 7.11 99.48 0.71 -17.27 16 5 H -0.29 -16.26 7.11 99.48 0.71 -15.56 16 6 H -0.26 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.26 -15.95 9.51 84.03 0.80 -15.15 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 N -0.60 -32.64 3.02 -707.76 -2.14 -34.78 16 10 C 0.14 5.66 6.46 86.42 0.56 6.22 16 11 C -0.11 -3.08 5.69 30.67 0.17 -2.91 16 12 C -0.10 -2.41 4.57 -10.69 -0.05 -2.46 16 13 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.10 1.88 5.52 81.09 0.45 2.33 16 15 N -0.63 -22.21 3.31 -870.76 -2.89 -25.09 16 16 C 0.56 24.50 7.96 86.79 0.69 25.19 16 17 O -0.59 -34.44 15.53 -3.86 -0.06 -34.50 16 18 C -0.15 -4.82 5.87 -20.12 -0.12 -4.94 16 19 C -0.06 -1.12 9.15 22.58 0.21 -0.91 16 20 C -0.11 -1.15 10.02 22.19 0.22 -0.92 16 21 C -0.04 -0.53 9.54 22.58 0.22 -0.31 16 22 C -0.16 -3.96 5.87 -20.12 -0.12 -4.08 16 23 C 0.56 14.63 8.05 86.79 0.70 15.32 16 24 N -0.82 -10.03 8.82 -175.60 -1.55 -11.58 16 25 O -0.60 -23.50 17.18 -3.87 -0.07 -23.56 16 26 C -0.04 -1.47 9.14 22.79 0.21 -1.26 16 27 C 0.10 3.86 3.99 38.50 0.15 4.02 16 28 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 29 C 0.18 9.50 4.56 85.82 0.39 9.90 16 30 H 0.24 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.30 7.68 -2.39 -0.02 1.28 16 35 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.46 6.62 -2.38 -0.02 1.44 16 37 H 0.17 2.08 4.20 -2.91 -0.01 2.07 16 38 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16 39 H 0.18 0.12 6.39 -2.91 -0.02 0.10 16 40 H 0.42 1.19 6.85 -92.71 -0.64 0.55 16 41 H 0.41 4.22 8.93 -92.71 -0.83 3.39 16 42 H 0.09 4.24 7.25 -2.91 -0.02 4.22 16 43 H 0.00 -0.19 7.99 -2.38 -0.02 -0.21 16 44 H 0.04 2.85 5.00 -2.39 -0.01 2.84 16 Total: -1.00 -107.72 354.33 0.07 -107.65 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -0.39 Total: 0.39 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 4.90 Total: 27.89 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -6.34 Total: -133.36 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -0.13 Total: -58.06 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 2.03 Total: 55.50 kcal Total: -107.72 0.07 -107.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084458803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.965 kcal (2) G-P(sol) polarization free energy of solvation -107.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds