Wall clock time and date at job start Tue Mar 31 2020 04:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48494 * 109.47111 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46884 * 119.99825 * 3 2 1 6 6 H 1.48493 * 109.46978 * 240.00100 * 3 2 1 7 7 C 1.38808 * 119.99843 * 180.27504 * 2 1 3 8 8 H 1.07998 * 119.99897 * 195.96908 * 7 2 1 9 9 N 1.36942 * 119.99766 * 15.97047 * 7 2 1 10 10 C 1.46621 * 119.88698 * 205.17031 * 9 7 2 11 11 C 1.53099 * 108.01093 * 237.30693 * 10 9 7 12 12 C 1.53018 * 109.44822 * 301.03016 * 11 10 9 13 13 H 1.08997 * 113.42166 * 274.22973 * 12 11 10 14 14 C 1.54649 * 110.83652 * 143.88529 * 12 11 10 15 15 N 1.47806 * 85.79614 * 270.23015 * 14 12 11 16 16 C 1.34767 * 135.01459 * 153.78664 * 15 14 12 17 17 O 1.21534 * 120.00364 * 185.54083 * 16 15 14 18 18 C 1.48039 * 120.00016 * 5.53357 * 16 15 14 19 19 C 1.39554 * 119.99805 * 6.51511 * 18 16 15 20 20 C 1.37821 * 119.99510 * 179.73713 * 19 18 16 21 21 C 1.39553 * 120.00315 * 0.55562 * 20 19 18 22 22 C 1.48027 * 120.00275 * 179.71901 * 21 20 19 23 23 N 1.34775 * 119.99874 * 359.97438 * 22 21 20 24 24 O 1.21531 * 120.00113 * 179.97438 * 22 21 20 25 25 C 1.39561 * 119.99831 * 359.70090 * 21 20 19 26 26 C 1.37821 * 119.99751 * 0.02562 * 25 21 20 27 27 C 1.46818 * 89.97116 * 333.81008 * 15 14 12 28 28 H 1.09004 * 111.56109 * 274.47940 * 27 15 14 29 29 C 1.45677 * 119.89408 * 24.89973 * 9 7 2 30 30 H 0.97001 * 120.00198 * 359.72332 * 1 2 3 31 31 H 1.08994 * 109.75728 * 356.93642 * 10 9 7 32 32 H 1.09001 * 109.74809 * 117.62724 * 10 9 7 33 33 H 1.09000 * 109.47675 * 61.02000 * 11 10 9 34 34 H 1.09000 * 109.47731 * 181.03515 * 11 10 9 35 35 H 1.08999 * 113.82278 * 24.45162 * 14 12 11 36 36 H 1.08998 * 113.82158 * 155.89145 * 14 12 11 37 37 H 1.07995 * 120.00153 * 0.02562 * 19 18 16 38 38 H 1.07998 * 119.99622 * 180.25585 * 20 19 18 39 39 H 0.97003 * 120.00317 * 0.02562 * 23 22 21 40 40 H 0.97005 * 120.00158 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.00229 * 179.97438 * 25 21 20 42 42 H 1.07999 * 119.99646 * 179.97438 * 26 25 21 43 43 H 1.08999 * 108.71186 * 261.76511 * 29 9 7 44 44 H 1.09008 * 108.71097 * 19.78232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0058 8 1 3.0589 -1.2214 0.2515 9 7 1.3651 -2.3636 -0.3377 10 6 1.8691 -3.6472 0.1601 11 6 2.1560 -4.5436 -1.0474 12 6 0.8717 -4.7340 -1.8572 13 1 0.2476 -5.5505 -1.4941 14 6 1.1793 -4.7884 -3.3718 15 7 1.0007 -3.3213 -3.3501 16 6 1.4583 -2.2943 -4.0931 17 8 1.2100 -1.1502 -3.7669 18 6 2.2638 -2.5597 -5.3065 19 6 2.4351 -3.8692 -5.7576 20 6 3.1805 -4.1157 -6.8903 21 6 3.7734 -3.0571 -7.5797 22 6 4.5791 -3.3225 -8.7928 23 7 4.7404 -4.5867 -9.2313 24 8 5.0951 -2.4005 -9.3933 25 6 3.6065 -1.7481 -7.1255 26 6 2.8564 -1.5010 -5.9959 27 6 0.1185 -3.4467 -2.1833 28 1 -0.9112 -3.6476 -2.4793 29 6 0.1768 -2.3191 -1.1793 30 1 -0.4850 0.8400 0.0041 31 1 2.7864 -3.4881 0.7269 32 1 1.1189 -4.1153 0.7975 33 1 2.9151 -4.0763 -1.6747 34 1 2.5156 -5.5132 -0.7031 35 1 2.1963 -5.1047 -3.6034 36 1 0.4256 -5.3169 -3.9554 37 1 1.9798 -4.6888 -5.2217 38 1 3.3096 -5.1287 -7.2417 39 1 4.3283 -5.3226 -8.7522 40 1 5.2687 -4.7607 -10.0260 41 1 4.0656 -0.9288 -7.6587 42 1 2.7276 -0.4880 -5.6443 43 1 -0.7056 -2.3679 -0.5413 44 1 0.1645 -1.3710 -1.7170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084824176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:37 Heat of formation + Delta-G solvation = 31.993507 kcal Electronic energy + Delta-G solvation = -28504.681449 eV Core-core repulsion = 24617.382588 eV Total energy + Delta-G solvation = -3887.298861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.80004 -40.11549 -38.56538 -37.15743 -35.25197 -34.18690 -32.28865 -31.55496 -31.04808 -30.18097 -28.80410 -27.07202 -24.93602 -24.03088 -23.18716 -22.42959 -21.48557 -20.82457 -19.96146 -18.54818 -17.95113 -17.36883 -16.98143 -16.23953 -15.80263 -15.75702 -15.16549 -15.03775 -14.64432 -14.36626 -14.26773 -13.89886 -13.73544 -13.58123 -13.42889 -13.24594 -12.73957 -12.43832 -12.38851 -12.33444 -11.94807 -11.51749 -11.36599 -11.04867 -10.64909 -10.61900 -10.50351 -10.41361 -10.20705 -10.08373 -9.91420 -9.80130 -9.66853 -9.21708 -9.13531 -9.01672 -8.29438 -8.18342 -6.59779 -5.65323 -3.06393 0.36683 1.16005 2.41351 3.11435 3.14377 3.26954 3.49170 3.55403 3.59426 3.90989 4.35024 4.46843 4.58880 4.63515 4.64877 4.74229 5.11439 5.14323 5.20169 5.30418 5.40925 5.45282 5.50397 5.59088 5.64873 5.76458 5.82356 5.88384 6.02762 6.09207 6.11290 6.24401 6.32993 6.34859 6.40573 6.48912 6.56204 6.63004 6.76694 6.94962 6.97801 7.47770 7.75479 7.89553 7.94116 8.18694 8.57404 8.64770 9.35972 10.00243 10.48068 11.43160 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003780 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.441833 B = 7406.068159 C = 8686.969167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.584 5.584 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.108 4.108 13 H 0.088 0.912 14 C 0.086 3.914 15 N -0.623 5.623 16 C 0.568 3.432 17 O -0.503 6.503 18 C -0.086 4.086 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.129 4.129 22 C 0.565 3.435 23 N -0.852 5.852 24 O -0.538 6.538 25 C -0.065 4.065 26 C -0.071 4.071 27 C 0.125 3.875 28 H 0.075 0.925 29 C 0.166 3.834 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.401 0.599 40 H 0.405 0.595 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.032 0.968 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -16.738 -14.013 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.020 3.980 11 C -0.157 4.157 12 C -0.127 4.127 13 H 0.106 0.894 14 C -0.037 4.037 15 N -0.359 5.359 16 C 0.357 3.643 17 O -0.378 6.378 18 C -0.089 4.089 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.132 4.132 22 C 0.351 3.649 23 N -0.416 5.416 24 O -0.416 6.416 25 C -0.084 4.084 26 C -0.090 4.090 27 C 0.022 3.978 28 H 0.093 0.907 29 C 0.040 3.960 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.231 0.769 40 H 0.236 0.764 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.050 0.950 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.946 -15.050 -14.206 21.068 hybrid contribution 0.401 0.232 -0.316 0.561 sum 4.347 -14.818 -14.521 21.198 Atomic orbital electron populations 1.69998 1.05237 1.25460 1.54071 1.24903 0.95222 0.98153 1.00334 0.86394 0.78994 0.83651 0.77843 1.21683 1.21192 1.20990 1.19028 0.92104 0.84889 1.42379 0.92022 1.43467 1.31391 1.01327 1.54459 1.20741 0.97441 0.87289 0.92493 1.21872 0.95150 0.99418 0.99280 1.22877 0.98641 0.97618 0.93602 0.89376 1.23745 1.01135 0.81527 0.97342 1.49677 1.49277 1.05555 1.31424 1.17774 0.80361 0.84254 0.81941 1.90880 1.57364 1.20089 1.69496 1.20435 0.98401 0.94039 0.96069 1.21792 0.98201 0.96760 0.96149 1.21160 0.97046 0.98045 0.95203 1.19981 1.01518 0.94962 0.96786 1.18360 0.79677 0.82848 0.84031 1.43752 1.56614 1.08302 1.32914 1.90819 1.48947 1.43757 1.58051 1.21258 0.96075 0.96019 0.95070 1.21382 0.94094 1.00158 0.93371 1.22786 0.92587 0.96674 0.85758 0.90749 1.20191 0.89291 0.96379 0.90188 0.93737 0.92551 0.96205 0.92075 0.92674 0.90099 0.90081 0.83856 0.85363 0.76903 0.76435 0.84067 0.83690 0.94984 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 11.02 55.49 0.61 -26.69 16 2 C 0.01 0.37 4.91 -17.43 -0.09 0.28 16 3 Si 0.90 23.39 29.58 -169.99 -5.03 18.36 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.25 -7.26 9.53 -15.06 -0.14 -7.40 16 8 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 9 N -0.58 -14.71 3.02 -174.88 -0.53 -15.24 16 10 C 0.15 2.96 6.47 -3.92 -0.03 2.94 16 11 C -0.12 -1.86 5.66 -26.67 -0.15 -2.01 16 12 C -0.11 -1.52 4.39 -89.97 -0.40 -1.92 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.09 1.00 5.59 -3.01 -0.02 0.98 16 15 N -0.62 -10.65 3.33 -174.85 -0.58 -11.23 16 16 C 0.57 11.02 7.95 -12.24 -0.10 10.92 16 17 O -0.50 -12.37 15.41 5.34 0.08 -12.29 16 18 C -0.09 -1.31 5.88 -104.90 -0.62 -1.93 16 19 C -0.11 -1.24 9.10 -39.24 -0.36 -1.59 16 20 C -0.10 -0.87 9.53 -39.24 -0.37 -1.24 16 21 C -0.13 -1.44 5.88 -104.90 -0.62 -2.06 16 22 C 0.56 6.18 8.05 -12.25 -0.10 6.08 16 23 N -0.85 -5.26 8.82 30.57 0.27 -4.99 16 24 O -0.54 -8.02 17.17 5.34 0.09 -7.93 16 25 C -0.07 -0.84 9.58 -39.24 -0.38 -1.22 16 26 C -0.07 -1.05 9.58 -39.24 -0.38 -1.43 16 27 C 0.13 2.28 4.24 -69.44 -0.29 1.99 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 C 0.17 4.03 4.61 -5.45 -0.03 4.00 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.81 6.63 -51.93 -0.34 0.47 16 36 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.14 1.31 4.09 -52.49 -0.21 1.10 16 38 H 0.13 0.63 6.39 -52.49 -0.34 0.29 16 39 H 0.40 1.32 6.85 -40.82 -0.28 1.04 16 40 H 0.40 1.94 8.93 -40.82 -0.36 1.58 16 41 H 0.14 1.75 7.64 -52.49 -0.40 1.35 16 42 H 0.15 2.28 7.65 -52.49 -0.40 1.88 16 43 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 44 H 0.10 2.99 4.87 -51.92 -0.25 2.73 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -37.38 354.06 -9.27 -46.65 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.48 Total: 1.63 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -4.05 Total: 6.40 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.23 Total: -58.15 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.03 Total: 18.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.38 -9.27 -46.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084824176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.641 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds