Wall clock time and date at job start Tue Mar 31 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48508 * 109.47089 * 240.00064 * 3 2 1 5 5 H 1.48496 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00222 * 3 2 1 7 7 C 1.38811 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21687 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.46816 * 119.99579 * 179.97438 * 19 18 16 22 22 C 1.40414 * 126.54106 * 0.02723 * 21 19 18 23 23 N 1.30972 * 108.76391 * 179.97438 * 22 21 19 24 24 N 1.39715 * 109.48972 * 0.02562 * 23 22 21 25 25 C 1.36352 * 133.19321 * 179.97438 * 24 23 22 26 26 C 1.35294 * 119.80708 * 180.02562 * 25 24 23 27 27 N 1.33244 * 121.27550 * 0.02562 * 26 25 24 28 28 C 1.31405 * 121.07821 * 359.97438 * 27 26 25 29 29 C 1.36818 * 107.96734 * 359.73071 * 24 23 22 30 30 H 0.96998 * 119.99581 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.07998 * 125.62209 * 0.02562 * 22 21 19 42 42 H 1.08000 * 120.09734 * 359.97438 * 25 24 23 43 43 H 1.08004 * 119.36622 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.18314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5890 12 6 2.4220 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4375 14 6 2.3088 -6.4560 -0.8280 15 6 1.9449 -6.0771 0.6089 16 6 1.1804 -4.7519 0.6089 17 1 0.2697 -4.8577 0.0194 18 7 0.8314 -4.3894 1.9849 19 6 -0.2870 -4.8860 2.5495 20 8 -1.0068 -5.6358 1.9167 21 6 -0.6364 -4.5232 3.9285 22 6 0.0904 -3.6753 4.7796 23 7 -0.5348 -3.5940 5.9276 24 7 -1.6906 -4.3778 5.8854 25 6 -2.6748 -4.6388 6.7923 26 6 -3.6966 -5.4603 6.4581 27 7 -3.7641 -6.0255 5.2534 28 6 -2.8389 -5.8033 4.3471 29 6 -1.7650 -4.9538 4.6467 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.5113 -4.1418 -2.0270 33 1 3.0469 -3.2552 -1.8718 34 1 3.4453 -5.6310 -2.4613 35 1 4.0972 -5.2550 -0.8480 36 1 1.3981 -6.5619 -1.4176 37 1 2.8533 -7.4002 -0.8285 38 1 2.8556 -5.9713 1.1985 39 1 1.3200 -6.8575 1.0432 40 1 1.4055 -3.7920 2.4894 41 1 1.0126 -3.1723 4.5287 42 1 -2.6384 -4.1919 7.7748 43 1 -4.4725 -5.6618 7.1818 44 1 -2.9082 -6.2687 3.3750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085226442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:24 Heat of formation + Delta-G solvation = 83.575756 kcal Electronic energy + Delta-G solvation = -28073.880948 eV Core-core repulsion = 24221.111612 eV Total energy + Delta-G solvation = -3852.769336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62287 -39.60728 -38.47964 -37.59163 -34.04071 -33.83119 -33.65615 -31.49078 -31.14221 -30.06842 -28.82294 -27.57457 -24.99346 -24.21394 -23.68360 -22.73666 -21.78865 -21.04721 -20.08191 -19.54960 -18.47688 -17.59463 -17.23965 -16.66843 -16.24305 -15.92399 -15.57251 -15.16467 -14.90697 -14.46984 -14.16036 -13.83252 -13.68473 -13.60911 -13.40374 -13.19379 -13.10590 -12.93249 -12.61565 -12.13787 -12.06222 -11.35360 -11.07646 -11.05052 -10.91340 -10.81040 -10.73587 -10.54335 -10.32197 -10.21351 -10.19296 -10.00280 -9.76389 -9.64350 -9.55335 -8.92102 -8.60229 -8.01462 -6.99066 -5.78407 -3.08196 0.19671 0.63305 1.73475 2.04504 3.07104 3.40760 3.45876 3.46825 3.47386 3.70030 3.94859 3.96973 4.06931 4.54937 4.61353 4.73262 4.89380 5.08792 5.13453 5.17715 5.21044 5.26856 5.46687 5.53015 5.57089 5.73678 5.84115 5.90546 5.94794 5.97367 6.00030 6.07286 6.13661 6.26163 6.35105 6.47443 6.50919 6.53142 6.60067 6.87675 6.91997 7.08680 7.11558 7.36571 7.66434 7.95378 8.38740 8.61363 9.50552 10.07350 10.42505 11.43332 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003974 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.251146 B = 7044.251053 C = 9062.453485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.144 3.856 17 H 0.086 0.914 18 N -0.701 5.701 19 C 0.598 3.402 20 O -0.556 6.556 21 C -0.262 4.262 22 C 0.120 3.880 23 N -0.304 5.304 24 N -0.251 5.251 25 C 0.063 3.937 26 C 0.024 3.976 27 N -0.449 5.449 28 C 0.172 3.828 29 C 0.090 3.910 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.401 0.599 41 H 0.206 0.794 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -13.414 10.720 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.038 3.962 17 H 0.104 0.896 18 N -0.349 5.349 19 C 0.385 3.615 20 O -0.435 6.435 21 C -0.280 4.280 22 C -0.059 4.059 23 N -0.127 5.127 24 N -0.018 5.018 25 C -0.066 4.066 26 C -0.118 4.118 27 N -0.160 5.160 28 C -0.008 4.008 29 C -0.033 4.033 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.223 0.777 42 H 0.197 0.803 43 H 0.202 0.798 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.839 -13.676 11.479 17.949 hybrid contribution 1.147 1.762 -0.280 2.121 sum -0.692 -11.914 11.198 16.365 Atomic orbital electron populations 1.69663 1.05076 1.25730 1.57181 1.24721 0.95402 0.97556 1.02894 0.86332 0.78541 0.83838 0.77807 1.21321 1.21816 1.21318 1.19150 0.90859 0.84024 1.43248 0.91261 1.42415 1.05829 0.99440 1.88544 1.20467 0.93905 0.85787 0.93602 0.93171 1.22220 0.99966 0.95506 0.99713 1.21584 0.98527 0.95714 0.99947 1.21469 0.99908 0.97969 0.95826 1.21875 1.00008 0.97306 0.97109 1.21304 0.99101 0.93956 0.81803 0.89600 1.45618 1.24775 1.49092 1.15382 1.16785 0.80843 0.79932 0.83973 1.90736 1.51302 1.37671 1.63834 1.19919 0.98811 1.11254 0.98012 1.24314 0.98777 0.93658 0.89134 1.77700 0.95227 1.16813 1.22970 1.46227 1.16568 1.29332 1.09675 1.22620 0.87647 1.00226 0.96085 1.22411 0.97814 0.96213 0.95383 1.68273 1.25409 1.20912 1.01394 1.23362 0.85787 0.91749 0.99863 1.20385 0.98152 0.97930 0.86801 0.93482 0.78086 0.92431 0.91637 0.92736 0.92412 0.91933 0.92442 0.92074 0.91826 0.76446 0.77704 0.80255 0.79840 0.78636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.80 4.95 -53.42 -0.26 -17.06 16 10 C 0.17 3.14 2.29 -67.93 -0.16 2.98 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.69 5.49 -26.74 -0.15 -1.84 16 16 C 0.14 2.34 1.97 -67.93 -0.13 2.21 16 17 H 0.09 1.61 7.57 -51.93 -0.39 1.22 16 18 N -0.70 -11.06 4.90 -55.07 -0.27 -11.33 16 19 C 0.60 9.97 7.76 -12.80 -0.10 9.87 16 20 O -0.56 -10.43 15.47 5.20 0.08 -10.35 16 21 C -0.26 -3.95 6.16 -104.75 -0.65 -4.60 16 22 C 0.12 1.63 11.44 -17.10 -0.20 1.43 16 23 N -0.30 -4.29 12.60 30.76 0.39 -3.90 16 24 N -0.25 -3.29 3.91 -10.50 -0.04 -3.33 16 25 C 0.06 0.59 11.24 -16.59 -0.19 0.40 16 26 C 0.02 0.20 11.07 -17.99 -0.20 0.00 16 27 N -0.45 -5.22 10.44 -13.26 -0.14 -5.36 16 28 C 0.17 2.23 10.98 -17.01 -0.19 2.04 16 29 C 0.09 1.29 6.77 -84.05 -0.57 0.72 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 9.98 7.80 -40.82 -0.32 9.66 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 5.88 7.53 -40.82 -0.31 5.57 16 41 H 0.21 2.21 7.46 -52.49 -0.39 1.82 16 42 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.20 2.48 7.20 -52.49 -0.38 2.10 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -32.73 367.19 -8.22 -40.95 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -5.98 Total: 14.07 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.23 Total: 0.73 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: 0.40 Total: -67.64 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.73 -8.22 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085226442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.523 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds