Wall clock time and date at job start Tue Mar 31 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48508 * 109.47089 * 240.00064 * 3 2 1 5 5 H 1.48496 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00222 * 3 2 1 7 7 C 1.38811 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21687 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.46816 * 119.99579 * 179.97438 * 19 18 16 22 22 C 1.40414 * 126.54106 * 0.02723 * 21 19 18 23 23 N 1.30972 * 108.76391 * 179.97438 * 22 21 19 24 24 N 1.39715 * 109.48972 * 0.02562 * 23 22 21 25 25 C 1.36352 * 133.19321 * 179.97438 * 24 23 22 26 26 C 1.35294 * 119.80708 * 180.02562 * 25 24 23 27 27 N 1.33244 * 121.27550 * 0.02562 * 26 25 24 28 28 C 1.31405 * 121.07821 * 359.97438 * 27 26 25 29 29 C 1.36818 * 107.96734 * 359.73071 * 24 23 22 30 30 H 0.96998 * 119.99581 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.07998 * 125.62209 * 0.02562 * 22 21 19 42 42 H 1.08000 * 120.09734 * 359.97438 * 25 24 23 43 43 H 1.08004 * 119.36622 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.18314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5890 12 6 2.4220 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4375 14 6 2.3088 -6.4560 -0.8280 15 6 1.9449 -6.0771 0.6089 16 6 1.1804 -4.7519 0.6089 17 1 0.2697 -4.8577 0.0194 18 7 0.8314 -4.3894 1.9849 19 6 -0.2870 -4.8860 2.5495 20 8 -1.0068 -5.6358 1.9167 21 6 -0.6364 -4.5232 3.9285 22 6 0.0904 -3.6753 4.7796 23 7 -0.5348 -3.5940 5.9276 24 7 -1.6906 -4.3778 5.8854 25 6 -2.6748 -4.6388 6.7923 26 6 -3.6966 -5.4603 6.4581 27 7 -3.7641 -6.0255 5.2534 28 6 -2.8389 -5.8033 4.3471 29 6 -1.7650 -4.9538 4.6467 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.5113 -4.1418 -2.0270 33 1 3.0469 -3.2552 -1.8718 34 1 3.4453 -5.6310 -2.4613 35 1 4.0972 -5.2550 -0.8480 36 1 1.3981 -6.5619 -1.4176 37 1 2.8533 -7.4002 -0.8285 38 1 2.8556 -5.9713 1.1985 39 1 1.3200 -6.8575 1.0432 40 1 1.4055 -3.7920 2.4894 41 1 1.0126 -3.1723 4.5287 42 1 -2.6384 -4.1919 7.7748 43 1 -4.4725 -5.6618 7.1818 44 1 -2.9082 -6.2687 3.3750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085226442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:23 Heat of formation + Delta-G solvation = 60.846031 kcal Electronic energy + Delta-G solvation = -28074.866583 eV Core-core repulsion = 24221.111612 eV Total energy + Delta-G solvation = -3853.754971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60444 -40.89658 -39.48294 -38.88527 -35.77413 -35.08184 -34.70165 -32.95757 -32.45893 -31.18325 -30.06056 -29.06291 -25.92624 -25.67368 -25.15764 -23.78215 -23.02830 -22.42122 -21.34049 -20.77016 -19.57286 -19.08896 -18.45169 -17.92996 -17.25305 -17.14321 -16.78158 -16.36813 -16.11215 -15.77230 -15.67558 -15.27990 -15.04159 -14.71615 -14.58813 -14.46367 -14.09806 -14.06871 -13.97753 -13.54705 -13.46246 -12.88993 -12.75651 -12.42673 -12.24220 -12.12172 -12.03713 -12.02315 -11.93036 -11.59451 -11.38710 -11.12471 -11.08847 -10.99599 -10.97060 -10.74181 -9.91647 -8.99303 -8.95349 -7.88150 -5.16504 -0.73717 -0.31301 0.81891 0.95125 1.49826 1.51675 1.57475 2.11862 2.28070 2.52669 2.59413 2.93637 3.11371 3.23102 3.45567 3.65830 3.74310 3.83902 3.90136 4.00833 4.16942 4.27307 4.31092 4.36456 4.38578 4.47724 4.50081 4.59907 4.65722 4.75826 4.99619 5.02157 5.06191 5.09006 5.23892 5.29527 5.34916 5.34984 5.36610 5.52479 5.57160 5.62244 5.74894 6.08824 6.31427 6.47673 6.68693 7.33945 7.38612 8.13651 8.37410 9.34746 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003974 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.251146 B = 7044.251053 C = 9062.453485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.304 1.304 6 H -0.275 1.275 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.151 3.849 17 H 0.055 0.945 18 N -0.698 5.698 19 C 0.596 3.404 20 O -0.586 6.586 21 C -0.297 4.297 22 C 0.125 3.875 23 N -0.322 5.322 24 N -0.251 5.251 25 C 0.067 3.933 26 C 0.032 3.968 27 N -0.449 5.449 28 C 0.147 3.853 29 C 0.082 3.918 30 H 0.246 0.754 31 H 0.368 0.632 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.406 0.594 41 H 0.225 0.775 42 H 0.222 0.778 43 H 0.233 0.767 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -14.367 12.650 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.265 4.265 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.231 1.231 6 H -0.201 1.201 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.154 4.154 16 C 0.046 3.954 17 H 0.073 0.927 18 N -0.346 5.346 19 C 0.384 3.616 20 O -0.468 6.468 21 C -0.314 4.314 22 C -0.054 4.054 23 N -0.145 5.145 24 N -0.018 5.018 25 C -0.062 4.062 26 C -0.111 4.111 27 N -0.160 5.160 28 C -0.030 4.030 29 C -0.041 4.041 30 H 0.055 0.945 31 H 0.200 0.800 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.242 0.758 41 H 0.241 0.759 42 H 0.239 0.761 43 H 0.249 0.751 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.639 -14.665 13.389 19.868 hybrid contribution 0.669 1.959 -0.739 2.198 sum 0.030 -12.706 12.650 17.930 Atomic orbital electron populations 1.69841 1.06698 1.25643 1.59960 1.25444 0.96040 1.00739 1.04269 0.85330 0.77130 0.79796 0.78197 1.20759 1.23128 1.20086 1.19551 0.91400 0.84854 1.40242 0.90189 1.42588 1.05167 1.00737 1.88517 1.20677 0.93901 0.84239 0.94787 0.92174 1.22093 0.99487 0.97436 0.97901 1.21516 0.98405 0.93361 1.01486 1.21474 0.99819 0.98984 0.94554 1.21807 1.00069 0.95095 0.98380 1.21159 0.97727 0.94891 0.81630 0.92701 1.45578 1.24821 1.49147 1.15095 1.17042 0.80483 0.79427 0.84615 1.90702 1.52184 1.39170 1.64783 1.19788 1.00416 1.13590 0.97655 1.24596 0.99135 0.92948 0.88672 1.77643 0.95948 1.17807 1.23151 1.46545 1.16832 1.28583 1.09842 1.23548 0.86221 0.99447 0.96974 1.23274 0.98395 0.94620 0.94790 1.68283 1.24686 1.20719 1.02328 1.23203 0.86507 0.92968 1.00359 1.20510 0.98182 0.98052 0.87404 0.94497 0.80040 0.94119 0.93218 0.91004 0.90928 0.92811 0.89561 0.90298 0.92340 0.75824 0.75878 0.76115 0.75075 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.23 -11.94 9.93 84.03 0.83 -11.11 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.85 4.95 -322.93 -1.60 -36.45 16 10 C 0.17 6.27 2.29 44.99 0.10 6.38 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 13 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 14 C -0.11 -2.55 5.92 30.59 0.18 -2.37 16 15 C -0.11 -3.00 5.49 30.59 0.17 -2.83 16 16 C 0.15 5.04 1.97 44.99 0.09 5.13 16 17 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 18 N -0.70 -22.74 4.90 -446.36 -2.19 -24.93 16 19 C 0.60 20.89 7.76 86.49 0.67 21.56 16 20 O -0.59 -23.40 15.47 -4.31 -0.07 -23.47 16 21 C -0.30 -9.29 6.16 -19.95 -0.12 -9.41 16 22 C 0.12 3.42 11.44 85.35 0.98 4.39 16 23 N -0.32 -8.86 12.60 -56.59 -0.71 -9.57 16 24 N -0.25 -6.30 3.91 -187.14 -0.73 -7.03 16 25 C 0.07 1.04 11.24 83.31 0.94 1.98 16 26 C 0.03 0.45 11.07 83.80 0.93 1.38 16 27 N -0.45 -9.85 10.44 -195.85 -2.05 -11.90 16 28 C 0.15 3.91 10.98 85.23 0.94 4.84 16 29 C 0.08 2.38 6.77 39.39 0.27 2.65 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 12.12 7.53 -92.70 -0.70 11.42 16 41 H 0.23 4.83 7.46 -2.91 -0.02 4.80 16 42 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.19 5.15 7.20 -2.91 -0.02 5.12 16 Total: -1.00 -73.75 367.19 1.37 -72.38 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.38 Total: 40.20 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.78 Total: 12.41 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -6.99 Total: -148.70 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -73.75 1.37 -72.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085226442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.223 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds