Wall clock time and date at job start Tue Mar 31 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46988 * 270.00515 * 3 2 1 5 5 H 1.48506 * 109.46688 * 30.00101 * 3 2 1 6 6 H 1.48501 * 109.47100 * 149.99724 * 3 2 1 7 7 C 1.38810 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00018 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47090 * 35.00416 * 10 9 7 12 12 C 1.53000 * 109.47232 * 275.00125 * 10 9 7 13 13 C 1.52996 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47426 * 59.99692 * 13 12 10 15 15 C 1.53000 * 109.47275 * 300.00149 * 14 13 12 16 16 C 1.52995 * 109.46969 * 59.99989 * 15 14 13 17 17 H 1.09000 * 109.47263 * 59.99764 * 16 15 14 18 18 N 1.46504 * 109.47049 * 179.97438 * 16 15 14 19 19 C 1.34776 * 120.00008 * 274.99766 * 18 16 15 20 20 O 1.21708 * 119.99919 * 0.02562 * 19 18 16 21 21 C 1.46667 * 119.99861 * 179.97438 * 19 18 16 22 22 C 1.40330 * 126.56559 * 0.02562 * 21 19 18 23 23 N 1.30996 * 108.78524 * 179.97438 * 22 21 19 24 24 N 1.39900 * 109.55575 * 359.97438 * 23 22 21 25 25 N 1.40025 * 132.51550 * 179.97438 * 24 23 22 26 26 C 1.30844 * 120.65429 * 180.02562 * 25 24 23 27 27 C 1.39726 * 120.97596 * 359.97438 * 26 25 24 28 28 C 1.36561 * 119.94661 * 0.02645 * 27 26 25 29 29 C 1.36756 * 107.87833 * 0.02886 * 24 23 22 30 30 H 0.97003 * 119.99928 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00067 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46807 * 300.00102 * 12 10 9 33 33 H 1.08998 * 109.46878 * 60.00047 * 12 10 9 34 34 H 1.08998 * 109.46969 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.46910 * 299.99345 * 13 12 10 36 36 H 1.09000 * 109.46773 * 60.00272 * 14 13 12 37 37 H 1.09001 * 109.47256 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46807 * 299.99836 * 15 14 13 39 39 H 1.08998 * 109.46878 * 179.97438 * 15 14 13 40 40 H 0.97000 * 119.99545 * 95.00189 * 18 16 15 41 41 H 1.07999 * 125.60285 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.50793 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.03195 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.45003 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 2.4221 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4375 14 6 2.3089 -6.4559 -0.8281 15 6 1.9450 -6.0771 0.6089 16 6 1.1805 -4.7519 0.6089 17 1 0.2698 -4.8577 0.0193 18 7 0.8315 -4.3894 1.9848 19 6 -0.2870 -4.8860 2.5494 20 8 -1.0069 -5.6359 1.9164 21 6 -0.6361 -4.5236 3.9271 22 6 0.0898 -3.6763 4.7782 23 7 -0.5356 -3.5950 5.9263 24 7 -1.6939 -4.3784 5.8850 25 7 -2.6966 -4.6355 6.8281 26 6 -3.6995 -5.4240 6.5375 27 6 -3.7980 -6.0293 5.2820 28 6 -2.8380 -5.8010 4.3379 29 6 -1.7646 -4.9587 4.6487 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 1.5114 -4.1418 -2.0270 33 1 3.0470 -3.2552 -1.8718 34 1 3.4462 -5.6305 -2.4612 35 1 4.0973 -5.2550 -0.8480 36 1 1.3983 -6.5618 -1.4177 37 1 2.8534 -7.4002 -0.8285 38 1 2.8557 -5.9713 1.1984 39 1 1.3194 -6.8571 1.0429 40 1 1.4054 -3.7920 2.4894 41 1 1.0120 -3.1733 4.5274 42 1 -4.4623 -5.6097 7.2790 43 1 -4.6321 -6.6779 5.0586 44 1 -2.9063 -6.2643 3.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085227342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:49 Heat of formation + Delta-G solvation = 104.588100 kcal Electronic energy + Delta-G solvation = -28036.555191 eV Core-core repulsion = 24184.697019 eV Total energy + Delta-G solvation = -3851.858173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.94294 -39.53805 -38.13753 -37.51331 -34.03319 -33.73691 -33.35399 -31.36251 -31.12235 -30.11488 -28.82959 -27.55244 -24.94583 -23.99534 -23.65798 -22.60856 -21.66304 -21.04506 -19.99960 -19.44680 -18.22079 -17.62024 -17.18332 -16.65230 -16.07180 -15.98479 -15.70703 -14.94316 -14.46403 -14.30926 -14.15125 -13.82254 -13.66429 -13.60115 -13.40840 -12.96441 -12.78046 -12.70543 -12.60364 -12.11290 -12.06269 -11.55905 -11.07517 -11.02145 -10.90763 -10.81808 -10.74343 -10.64080 -10.54217 -10.31325 -10.16112 -9.82113 -9.75778 -9.63825 -9.54016 -8.91622 -8.62908 -8.19375 -6.98231 -5.77595 -3.07351 0.04068 0.80736 1.23831 2.11049 2.80126 3.42027 3.47365 3.49476 3.51438 3.70479 4.00550 4.18076 4.34574 4.37818 4.56047 4.70068 5.01396 5.06072 5.08650 5.15368 5.23466 5.39257 5.53423 5.54212 5.61747 5.72657 5.75494 5.84072 5.86983 5.91896 5.97120 5.99386 6.12941 6.15212 6.34499 6.47015 6.50379 6.52818 6.59655 6.87423 6.91939 7.10245 7.15206 7.25343 7.67938 7.95940 8.39463 8.61296 9.51450 10.07993 10.43086 11.44243 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.003957 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.774061 B = 7073.879681 C = 9095.427603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.144 3.856 17 H 0.085 0.915 18 N -0.700 5.700 19 C 0.598 3.402 20 O -0.559 6.559 21 C -0.256 4.256 22 C 0.101 3.899 23 N -0.254 5.254 24 N -0.175 5.175 25 N -0.218 5.218 26 C 0.115 3.885 27 C -0.166 4.166 28 C -0.019 4.019 29 C 0.101 3.899 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.210 0.790 42 H 0.205 0.795 43 H 0.159 0.841 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -16.063 8.618 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.038 3.962 17 H 0.103 0.897 18 N -0.348 5.348 19 C 0.385 3.615 20 O -0.439 6.439 21 C -0.273 4.273 22 C -0.080 4.080 23 N -0.079 5.079 24 N -0.041 5.041 25 N -0.030 5.030 26 C -0.077 4.077 27 C -0.191 4.191 28 C -0.047 4.047 29 C -0.025 4.025 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.226 0.774 42 H 0.222 0.778 43 H 0.176 0.824 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.315 -15.254 10.202 18.648 hybrid contribution 0.108 0.638 -1.306 1.458 sum -3.207 -14.617 8.896 17.409 Atomic orbital electron populations 1.69673 1.05091 1.25616 1.57265 1.24724 0.95403 0.97574 1.02885 0.86255 0.78672 0.84125 0.77492 1.21805 1.21884 1.20755 1.19192 0.90894 0.83998 1.43134 0.91193 1.42421 1.05824 0.99454 1.88530 1.20470 0.93927 0.85783 0.93597 0.93128 1.22219 0.99950 0.95508 0.99720 1.21582 0.98537 0.95708 0.99948 1.21468 0.99887 0.97982 0.95814 1.21876 1.00024 0.97288 0.97110 1.21302 0.99064 0.93977 0.81825 0.89674 1.45628 1.24768 1.49044 1.15361 1.16790 0.80802 0.79860 0.84030 1.90724 1.51410 1.37826 1.63934 1.19934 0.99020 1.10684 0.97665 1.24387 0.99280 0.94973 0.89314 1.77714 0.93254 1.14684 1.22203 1.50937 1.15727 1.30420 1.07043 1.75828 0.97313 1.17077 1.12813 1.24260 0.94458 0.91183 0.97809 1.21706 1.01365 1.02673 0.93390 1.21213 0.89374 0.92550 1.01548 1.19749 0.97200 0.97574 0.87986 0.93536 0.78108 0.92458 0.91613 0.92732 0.92390 0.91979 0.92445 0.92019 0.91895 0.76353 0.77394 0.77827 0.82368 0.81177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -16.94 4.95 -53.42 -0.26 -17.20 16 10 C 0.17 3.17 2.30 -67.92 -0.16 3.01 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.25 5.50 -26.73 -0.15 -2.40 16 13 C -0.12 -1.59 5.92 -26.74 -0.16 -1.75 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.71 5.49 -26.73 -0.15 -1.85 16 16 C 0.14 2.37 1.97 -67.93 -0.13 2.24 16 17 H 0.09 1.61 7.57 -51.93 -0.39 1.22 16 18 N -0.70 -11.30 4.90 -55.11 -0.27 -11.57 16 19 C 0.60 10.21 7.75 -12.86 -0.10 10.11 16 20 O -0.56 -10.59 15.43 5.18 0.08 -10.51 16 21 C -0.26 -4.07 6.16 -104.73 -0.65 -4.71 16 22 C 0.10 1.49 11.44 -17.12 -0.20 1.30 16 23 N -0.25 -4.15 12.61 30.75 0.39 -3.77 16 24 N -0.17 -2.71 5.25 32.44 0.17 -2.54 16 25 N -0.22 -2.79 11.96 30.59 0.37 -2.42 16 26 C 0.12 0.90 11.28 -17.42 -0.20 0.71 16 27 C -0.17 -1.26 10.04 -39.63 -0.40 -1.65 16 28 C -0.02 -0.22 9.75 -39.55 -0.39 -0.61 16 29 C 0.10 1.51 6.83 -84.05 -0.57 0.93 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 6.05 7.52 -40.82 -0.31 5.75 16 41 H 0.21 2.42 7.46 -52.49 -0.39 2.03 16 42 H 0.21 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.17 1.90 7.18 -52.49 -0.38 1.52 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -34.53 367.83 -7.91 -42.44 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.98 Total: 13.06 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.64 Total: -3.09 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 1.11 Total: -64.35 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.53 -7.91 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085227342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.029 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds