Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46988 * 270.00515 * 3 2 1 5 5 H 1.48506 * 109.46688 * 30.00101 * 3 2 1 6 6 H 1.48501 * 109.47100 * 149.99724 * 3 2 1 7 7 C 1.38810 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00018 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47090 * 35.00416 * 10 9 7 12 12 C 1.53000 * 109.47232 * 275.00125 * 10 9 7 13 13 C 1.52996 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47426 * 59.99692 * 13 12 10 15 15 C 1.53000 * 109.47275 * 300.00149 * 14 13 12 16 16 C 1.52995 * 109.46969 * 59.99989 * 15 14 13 17 17 H 1.09000 * 109.47263 * 59.99764 * 16 15 14 18 18 N 1.46504 * 109.47049 * 179.97438 * 16 15 14 19 19 C 1.34776 * 120.00008 * 274.99766 * 18 16 15 20 20 O 1.21708 * 119.99919 * 0.02562 * 19 18 16 21 21 C 1.46667 * 119.99861 * 179.97438 * 19 18 16 22 22 C 1.40330 * 126.56559 * 0.02562 * 21 19 18 23 23 N 1.30996 * 108.78524 * 179.97438 * 22 21 19 24 24 N 1.39900 * 109.55575 * 359.97438 * 23 22 21 25 25 N 1.40025 * 132.51550 * 179.97438 * 24 23 22 26 26 C 1.30844 * 120.65429 * 180.02562 * 25 24 23 27 27 C 1.39726 * 120.97596 * 359.97438 * 26 25 24 28 28 C 1.36561 * 119.94661 * 0.02645 * 27 26 25 29 29 C 1.36756 * 107.87833 * 0.02886 * 24 23 22 30 30 H 0.97003 * 119.99928 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00067 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46807 * 300.00102 * 12 10 9 33 33 H 1.08998 * 109.46878 * 60.00047 * 12 10 9 34 34 H 1.08998 * 109.46969 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.46910 * 299.99345 * 13 12 10 36 36 H 1.09000 * 109.46773 * 60.00272 * 14 13 12 37 37 H 1.09001 * 109.47256 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46807 * 299.99836 * 15 14 13 39 39 H 1.08998 * 109.46878 * 179.97438 * 15 14 13 40 40 H 0.97000 * 119.99545 * 95.00189 * 18 16 15 41 41 H 1.07999 * 125.60285 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.50793 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.03195 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.45003 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 2.4221 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4375 14 6 2.3089 -6.4559 -0.8281 15 6 1.9450 -6.0771 0.6089 16 6 1.1805 -4.7519 0.6089 17 1 0.2698 -4.8577 0.0193 18 7 0.8315 -4.3894 1.9848 19 6 -0.2870 -4.8860 2.5494 20 8 -1.0069 -5.6359 1.9164 21 6 -0.6361 -4.5236 3.9271 22 6 0.0898 -3.6763 4.7782 23 7 -0.5356 -3.5950 5.9263 24 7 -1.6939 -4.3784 5.8850 25 7 -2.6966 -4.6355 6.8281 26 6 -3.6995 -5.4240 6.5375 27 6 -3.7980 -6.0293 5.2820 28 6 -2.8380 -5.8010 4.3379 29 6 -1.7646 -4.9587 4.6487 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 1.5114 -4.1418 -2.0270 33 1 3.0470 -3.2552 -1.8718 34 1 3.4462 -5.6305 -2.4612 35 1 4.0973 -5.2550 -0.8480 36 1 1.3983 -6.5618 -1.4177 37 1 2.8534 -7.4002 -0.8285 38 1 2.8557 -5.9713 1.1984 39 1 1.3194 -6.8571 1.0429 40 1 1.4054 -3.7920 2.4894 41 1 1.0120 -3.1733 4.5274 42 1 -4.4623 -5.6097 7.2790 43 1 -4.6321 -6.6779 5.0586 44 1 -2.9063 -6.2643 3.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085227342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = 79.563818 kcal Electronic energy + Delta-G solvation = -28037.640325 eV Core-core repulsion = 24184.697019 eV Total energy + Delta-G solvation = -3852.943307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96232 -40.84777 -39.20184 -38.72358 -35.78620 -35.06970 -34.27180 -32.97287 -32.32460 -31.25683 -30.10968 -29.06257 -25.83186 -25.65124 -24.94008 -23.69958 -22.92983 -22.41955 -21.28230 -20.68870 -19.34858 -19.08566 -18.43088 -17.81960 -17.11609 -17.03399 -16.90890 -16.55037 -15.77671 -15.73596 -15.30368 -15.27855 -15.03816 -14.67476 -14.58901 -14.41107 -14.04318 -13.71130 -13.63130 -13.48523 -13.44878 -12.90741 -12.79232 -12.61534 -12.22241 -12.12730 -12.01623 -11.99252 -11.92021 -11.60710 -11.54473 -11.39644 -11.09815 -10.98685 -10.84304 -10.74789 -9.95338 -9.27142 -8.96600 -7.89443 -5.17632 -0.82637 -0.06645 0.29587 0.95422 1.49163 1.49523 1.57754 1.94740 2.26712 2.47855 2.58415 3.13374 3.31704 3.41817 3.45223 3.60279 3.73257 3.84883 3.91257 4.06469 4.15327 4.27542 4.30087 4.33080 4.37353 4.48462 4.56243 4.64035 4.74564 4.83600 4.90960 4.99746 5.04642 5.08949 5.15334 5.22624 5.28613 5.33784 5.35469 5.51411 5.56299 5.61086 5.73543 6.11953 6.30406 6.32919 6.66129 7.30758 7.37557 8.12445 8.36046 9.33715 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.003957 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.774061 B = 7073.879681 C = 9095.427603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.292 1.292 5 H -0.304 1.304 6 H -0.265 1.265 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.172 3.828 11 H 0.059 0.941 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.152 3.848 17 H 0.056 0.944 18 N -0.699 5.699 19 C 0.598 3.402 20 O -0.586 6.586 21 C -0.296 4.296 22 C 0.105 3.895 23 N -0.293 5.293 24 N -0.189 5.189 25 N -0.258 5.258 26 C 0.134 3.866 27 C -0.118 4.118 28 C -0.062 4.062 29 C 0.100 3.900 30 H 0.246 0.754 31 H 0.368 0.632 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.406 0.594 41 H 0.227 0.773 42 H 0.266 0.734 43 H 0.213 0.787 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -18.215 9.648 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.266 4.266 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.190 1.190 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.154 4.154 16 C 0.046 3.954 17 H 0.074 0.926 18 N -0.347 5.347 19 C 0.387 3.613 20 O -0.468 6.468 21 C -0.312 4.312 22 C -0.075 4.075 23 N -0.117 5.117 24 N -0.054 5.054 25 N -0.070 5.070 26 C -0.057 4.057 27 C -0.143 4.143 28 C -0.090 4.090 29 C -0.028 4.028 30 H 0.055 0.945 31 H 0.200 0.800 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.241 0.759 41 H 0.243 0.757 42 H 0.281 0.719 43 H 0.230 0.770 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.308 -17.436 11.241 21.007 hybrid contribution -0.081 1.132 -1.529 1.904 sum -3.389 -16.304 9.712 19.277 Atomic orbital electron populations 1.69845 1.06708 1.25566 1.60045 1.25448 0.96058 1.00761 1.04295 0.85256 0.77921 0.80160 0.77131 1.21965 1.23077 1.18980 1.19585 0.91411 0.84845 1.40075 0.90167 1.42592 1.05168 1.00757 1.88503 1.20686 0.93882 0.84239 0.94862 0.92280 1.22088 0.99524 0.97462 0.97794 1.21516 0.98391 0.93358 1.01529 1.21471 0.99851 0.98985 0.94452 1.21810 1.00032 0.95055 0.98459 1.21171 0.97749 0.94925 0.81528 0.92617 1.45606 1.24810 1.49097 1.15156 1.16977 0.80480 0.79385 0.84490 1.90683 1.52194 1.39190 1.64745 1.19884 1.00802 1.13080 0.97481 1.24655 0.99615 0.94439 0.88790 1.77563 0.94592 1.16460 1.23090 1.51099 1.16125 1.30454 1.07673 1.75908 0.98354 1.19669 1.13099 1.25425 0.93334 0.88024 0.98954 1.22376 1.00371 0.99993 0.91539 1.21394 0.90368 0.94175 1.03040 1.20196 0.97545 0.97285 0.87740 0.94507 0.80050 0.94037 0.93190 0.90906 0.91001 0.92713 0.89514 0.90399 0.92325 0.75868 0.75652 0.71907 0.76983 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.23 -12.03 9.93 84.03 0.83 -11.19 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -35.29 4.95 -322.92 -1.60 -36.89 16 10 C 0.17 6.33 2.30 44.99 0.10 6.44 16 11 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 13 C -0.11 -2.67 5.92 30.59 0.18 -2.48 16 14 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 15 C -0.11 -3.03 5.49 30.59 0.17 -2.86 16 16 C 0.15 5.11 1.97 44.99 0.09 5.20 16 17 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 18 N -0.70 -23.47 4.90 -446.49 -2.19 -25.66 16 19 C 0.60 21.54 7.75 86.44 0.67 22.21 16 20 O -0.59 -23.33 15.43 -4.37 -0.07 -23.40 16 21 C -0.30 -9.93 6.16 -19.93 -0.12 -10.05 16 22 C 0.11 3.30 11.44 85.33 0.98 4.28 16 23 N -0.29 -10.01 12.61 -56.63 -0.71 -10.72 16 24 N -0.19 -5.94 5.25 -51.28 -0.27 -6.21 16 25 N -0.26 -6.20 11.96 -57.12 -0.68 -6.88 16 26 C 0.13 1.54 11.28 85.20 0.96 2.50 16 27 C -0.12 -1.31 10.04 22.24 0.22 -1.09 16 28 C -0.06 -1.38 9.75 22.29 0.22 -1.16 16 29 C 0.10 3.07 6.83 39.42 0.27 3.34 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.37 20.16 7.80 -92.70 -0.72 19.44 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.41 12.72 7.52 -92.71 -0.70 12.02 16 41 H 0.23 5.63 7.46 -2.91 -0.02 5.61 16 42 H 0.27 -0.34 8.06 -2.91 -0.02 -0.36 16 43 H 0.21 0.08 8.06 -2.91 -0.02 0.06 16 44 H 0.17 3.75 7.18 -2.91 -0.02 3.73 16 Total: -1.00 -80.81 367.83 1.80 -79.01 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.38 Total: 37.36 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.39 Total: 4.99 kcal Atomic # 7 Polarization: -140.66 SS G_CDS: -5.17 Total: -145.83 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -80.81 1.80 -79.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085227342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.576 kcal (2) G-P(sol) polarization free energy of solvation -80.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds