Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00361 * 2 1 4 4 H 1.48503 * 109.46882 * 270.00136 * 3 2 1 5 5 H 1.48502 * 109.46937 * 29.99791 * 3 2 1 6 6 H 1.48494 * 109.47494 * 149.99638 * 3 2 1 7 7 C 1.38812 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00085 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47546 * 34.99244 * 10 9 7 12 12 C 1.52999 * 109.46883 * 274.99278 * 10 9 7 13 13 C 1.53000 * 109.47387 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46882 * 60.00480 * 13 12 10 15 15 C 1.53007 * 109.46946 * 300.00045 * 14 13 12 16 16 C 1.52998 * 109.47099 * 59.99985 * 15 14 13 17 17 H 1.08997 * 109.47333 * 60.00287 * 16 15 14 18 18 N 1.46501 * 109.46982 * 180.02562 * 16 15 14 19 19 C 1.34781 * 119.99704 * 274.99997 * 18 16 15 20 20 O 1.21712 * 119.99837 * 359.97438 * 19 18 16 21 21 C 1.46585 * 119.99553 * 180.02562 * 19 18 16 22 22 C 1.40641 * 126.54293 * 359.97438 * 21 19 18 23 23 N 1.30695 * 108.73080 * 179.97438 * 22 21 19 24 24 N 1.39912 * 109.51704 * 359.97438 * 23 22 21 25 25 C 1.36310 * 132.16306 * 179.97438 * 24 23 22 26 26 C 1.35759 * 119.15826 * 180.02562 * 25 24 23 27 27 C 1.39965 * 119.35089 * 0.25978 * 26 25 24 28 28 N 1.31492 * 120.11096 * 359.45663 * 27 26 25 29 29 C 1.33387 * 120.84988 * 0.56154 * 28 27 26 30 30 H 0.96999 * 119.99784 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99948 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47694 * 300.00271 * 12 10 9 33 33 H 1.09001 * 109.47423 * 59.99915 * 12 10 9 34 34 H 1.09005 * 109.47339 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47418 * 300.00196 * 13 12 10 36 36 H 1.08997 * 109.47326 * 59.99660 * 14 13 12 37 37 H 1.09001 * 109.47249 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.47023 * 300.00182 * 15 14 13 39 39 H 1.08992 * 109.47392 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00086 * 94.99767 * 18 16 15 41 41 H 1.07997 * 125.63407 * 359.97438 * 22 21 19 42 42 H 1.08006 * 120.42379 * 0.02562 * 25 24 23 43 43 H 1.08002 * 120.32054 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.94410 * 179.72213 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5503 0.5916 12 6 2.4228 -4.0363 -1.4349 13 6 3.1883 -5.3610 -1.4338 14 6 2.3111 -6.4564 -0.8241 15 6 1.9463 -6.0769 0.6125 16 6 1.1808 -4.7522 0.6114 17 1 0.2705 -4.8591 0.0215 18 7 0.8320 -4.3886 1.9870 19 6 -0.2860 -4.8855 2.5525 20 8 -1.0060 -5.6359 1.9201 21 6 -0.6353 -4.5212 3.9287 22 6 0.0922 -3.6703 4.7801 23 7 -0.5326 -3.5881 5.9251 24 7 -1.6904 -4.3724 5.8832 25 6 -2.6634 -4.6174 6.8058 26 6 -3.6925 -5.4404 6.4791 27 6 -3.7285 -6.0221 5.2066 28 7 -2.7782 -5.7626 4.3356 29 6 -1.7641 -4.9551 4.6500 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 1.5125 -4.1428 -2.0250 33 1 3.0480 -3.2562 -1.8692 34 1 3.4478 -5.6316 -2.4573 35 1 4.0986 -5.2541 -0.8440 36 1 1.4008 -6.5633 -1.4140 37 1 2.8566 -7.4001 -0.8229 38 1 2.8566 -5.9700 1.2025 39 1 1.3218 -6.8574 1.0471 40 1 1.4056 -3.7903 2.4908 41 1 1.0147 -3.1680 4.5291 42 1 -2.6163 -4.1627 7.7843 43 1 -4.4734 -5.6478 7.1958 44 1 -4.5403 -6.6818 4.9381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085294011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = 87.117190 kcal Electronic energy + Delta-G solvation = -28071.756191 eV Core-core repulsion = 24219.140423 eV Total energy + Delta-G solvation = -3852.615768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53499 -39.43419 -38.23902 -37.40936 -34.16614 -33.96673 -33.52742 -31.35525 -31.07420 -30.00646 -28.76827 -27.49768 -25.08370 -24.12486 -23.62704 -22.62679 -21.70682 -20.97565 -19.92495 -19.48760 -18.39108 -17.54350 -17.16957 -16.78751 -16.28641 -15.97536 -15.60893 -14.86203 -14.48778 -14.30019 -14.07424 -13.71086 -13.67259 -13.54240 -13.30014 -13.14540 -12.86171 -12.79242 -12.54339 -12.06214 -11.98290 -11.60435 -11.36353 -11.02879 -10.87648 -10.73329 -10.67848 -10.48006 -10.25303 -10.12411 -9.96196 -9.79894 -9.67219 -9.56203 -9.33368 -8.86927 -8.43985 -8.02031 -6.93380 -5.73626 -3.03066 0.23426 0.60697 1.78447 2.16013 3.07721 3.43700 3.48913 3.50831 3.59613 3.67073 3.91378 4.02827 4.10921 4.58234 4.59216 4.80282 5.02795 5.04989 5.16578 5.19929 5.24382 5.34146 5.56721 5.59944 5.67231 5.73514 5.81242 5.92871 5.98873 6.04933 6.07148 6.08727 6.19695 6.27055 6.44007 6.53549 6.58807 6.62836 6.66862 6.94592 7.03236 7.17247 7.21988 7.47197 7.71251 8.14718 8.43547 8.86138 9.55219 10.13137 10.48363 11.48274 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003992 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.041932 B = 7011.888493 C = 9032.204864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.145 3.855 17 H 0.084 0.916 18 N -0.706 5.706 19 C 0.596 3.404 20 O -0.539 6.539 21 C -0.274 4.274 22 C 0.134 3.866 23 N -0.312 5.312 24 N -0.309 5.309 25 C 0.165 3.835 26 C -0.227 4.227 27 C 0.178 3.822 28 N -0.437 5.437 29 C 0.312 3.688 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.399 0.601 41 H 0.207 0.793 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 -13.941 13.257 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.040 3.960 17 H 0.102 0.898 18 N -0.356 5.356 19 C 0.382 3.618 20 O -0.417 6.417 21 C -0.290 4.290 22 C -0.047 4.047 23 N -0.134 5.134 24 N -0.078 5.078 25 C 0.029 3.971 26 C -0.250 4.250 27 C -0.005 4.005 28 N -0.147 5.147 29 C 0.081 3.919 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.224 0.776 42 H 0.199 0.801 43 H 0.187 0.813 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.204 -13.996 13.058 19.408 hybrid contribution 0.302 1.459 0.305 1.520 sum -2.902 -12.538 13.363 18.552 Atomic orbital electron populations 1.69680 1.05071 1.25521 1.57395 1.24723 0.95394 0.97534 1.03051 0.86257 0.78630 0.84184 0.77487 1.21831 1.21943 1.20796 1.19203 0.90877 0.84040 1.42906 0.91220 1.42426 1.05864 0.99452 1.88471 1.20462 0.93909 0.85830 0.93526 0.93216 1.22219 0.99918 0.95474 0.99785 1.21580 0.98514 0.95744 0.99875 1.21474 0.99860 0.97908 0.95929 1.21878 0.99961 0.97484 0.96977 1.21240 0.98911 0.93775 0.82065 0.89801 1.45610 1.25108 1.49568 1.15288 1.16691 0.80817 0.80207 0.84046 1.90800 1.50743 1.36728 1.63414 1.19586 0.98718 1.12399 0.98320 1.24240 0.98486 0.93006 0.88981 1.77606 0.95425 1.17376 1.23024 1.47060 1.17700 1.31620 1.11425 1.22115 0.85334 0.95043 0.94648 1.21905 1.00614 1.02010 1.00516 1.23608 0.94942 0.93631 0.88315 1.68339 1.00697 1.12966 1.32708 1.20394 0.94757 0.92541 0.84224 0.93588 0.78073 0.92456 0.91696 0.92787 0.92430 0.91970 0.92511 0.92137 0.91890 0.76720 0.77635 0.80136 0.81336 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.72 -17.49 4.95 -53.43 -0.26 -17.75 16 10 C 0.17 3.32 2.29 -67.93 -0.16 3.17 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 14 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.12 -1.86 5.49 -26.73 -0.15 -2.00 16 16 C 0.15 2.59 1.98 -67.93 -0.13 2.45 16 17 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 18 N -0.71 -12.36 4.90 -55.14 -0.27 -12.63 16 19 C 0.60 11.42 7.75 -12.89 -0.10 11.32 16 20 O -0.54 -11.99 16.40 5.18 0.08 -11.91 16 21 C -0.27 -4.71 6.17 -104.65 -0.65 -5.35 16 22 C 0.13 1.95 11.44 -17.13 -0.20 1.76 16 23 N -0.31 -4.54 12.58 30.76 0.39 -4.16 16 24 N -0.31 -4.16 3.86 -11.97 -0.05 -4.21 16 25 C 0.16 1.39 11.29 -16.45 -0.19 1.20 16 26 C -0.23 -1.41 10.05 -39.82 -0.40 -1.81 16 27 C 0.18 1.61 11.28 -17.05 -0.19 1.42 16 28 N -0.44 -6.56 10.26 -12.00 -0.12 -6.69 16 29 C 0.31 5.05 7.74 -155.83 -1.21 3.84 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.42 7.80 -40.82 -0.32 10.10 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 6.40 7.52 -40.82 -0.31 6.09 16 41 H 0.21 2.38 7.46 -52.49 -0.39 1.99 16 42 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.17 0.29 8.06 -52.49 -0.42 -0.14 16 44 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -36.70 369.04 -9.07 -45.76 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.03 Total: 13.18 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -4.07 Total: 3.03 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: 0.41 Total: -72.72 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.70 -9.07 -45.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085294011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.881 kcal (2) G-P(sol) polarization free energy of solvation -36.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds