Wall clock time and date at job start Tue Mar 31 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00361 * 2 1 4 4 H 1.48503 * 109.46882 * 270.00136 * 3 2 1 5 5 H 1.48502 * 109.46937 * 29.99791 * 3 2 1 6 6 H 1.48494 * 109.47494 * 149.99638 * 3 2 1 7 7 C 1.38812 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00085 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47546 * 34.99244 * 10 9 7 12 12 C 1.52999 * 109.46883 * 274.99278 * 10 9 7 13 13 C 1.53000 * 109.47387 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46882 * 60.00480 * 13 12 10 15 15 C 1.53007 * 109.46946 * 300.00045 * 14 13 12 16 16 C 1.52998 * 109.47099 * 59.99985 * 15 14 13 17 17 H 1.08997 * 109.47333 * 60.00287 * 16 15 14 18 18 N 1.46501 * 109.46982 * 180.02562 * 16 15 14 19 19 C 1.34781 * 119.99704 * 274.99997 * 18 16 15 20 20 O 1.21712 * 119.99837 * 359.97438 * 19 18 16 21 21 C 1.46585 * 119.99553 * 180.02562 * 19 18 16 22 22 C 1.40641 * 126.54293 * 359.97438 * 21 19 18 23 23 N 1.30695 * 108.73080 * 179.97438 * 22 21 19 24 24 N 1.39912 * 109.51704 * 359.97438 * 23 22 21 25 25 C 1.36310 * 132.16306 * 179.97438 * 24 23 22 26 26 C 1.35759 * 119.15826 * 180.02562 * 25 24 23 27 27 C 1.39965 * 119.35089 * 0.25978 * 26 25 24 28 28 N 1.31492 * 120.11096 * 359.45663 * 27 26 25 29 29 C 1.33387 * 120.84988 * 0.56154 * 28 27 26 30 30 H 0.96999 * 119.99784 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99948 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47694 * 300.00271 * 12 10 9 33 33 H 1.09001 * 109.47423 * 59.99915 * 12 10 9 34 34 H 1.09005 * 109.47339 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47418 * 300.00196 * 13 12 10 36 36 H 1.08997 * 109.47326 * 59.99660 * 14 13 12 37 37 H 1.09001 * 109.47249 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.47023 * 300.00182 * 15 14 13 39 39 H 1.08992 * 109.47392 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00086 * 94.99767 * 18 16 15 41 41 H 1.07997 * 125.63407 * 359.97438 * 22 21 19 42 42 H 1.08006 * 120.42379 * 0.02562 * 25 24 23 43 43 H 1.08002 * 120.32054 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.94410 * 179.72213 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5503 0.5916 12 6 2.4228 -4.0363 -1.4349 13 6 3.1883 -5.3610 -1.4338 14 6 2.3111 -6.4564 -0.8241 15 6 1.9463 -6.0769 0.6125 16 6 1.1808 -4.7522 0.6114 17 1 0.2705 -4.8591 0.0215 18 7 0.8320 -4.3886 1.9870 19 6 -0.2860 -4.8855 2.5525 20 8 -1.0060 -5.6359 1.9201 21 6 -0.6353 -4.5212 3.9287 22 6 0.0922 -3.6703 4.7801 23 7 -0.5326 -3.5881 5.9251 24 7 -1.6904 -4.3724 5.8832 25 6 -2.6634 -4.6174 6.8058 26 6 -3.6925 -5.4404 6.4791 27 6 -3.7285 -6.0221 5.2066 28 7 -2.7782 -5.7626 4.3356 29 6 -1.7641 -4.9551 4.6500 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 1.5125 -4.1428 -2.0250 33 1 3.0480 -3.2562 -1.8692 34 1 3.4478 -5.6316 -2.4573 35 1 4.0986 -5.2541 -0.8440 36 1 1.4008 -6.5633 -1.4140 37 1 2.8566 -7.4001 -0.8229 38 1 2.8566 -5.9700 1.2025 39 1 1.3218 -6.8574 1.0471 40 1 1.4056 -3.7903 2.4908 41 1 1.0147 -3.1680 4.5291 42 1 -2.6163 -4.1627 7.7843 43 1 -4.4734 -5.6478 7.1958 44 1 -4.5403 -6.6818 4.9381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085294011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:43 Heat of formation + Delta-G solvation = 60.523376 kcal Electronic energy + Delta-G solvation = -28072.909386 eV Core-core repulsion = 24219.140423 eV Total energy + Delta-G solvation = -3853.768962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.49379 -40.84574 -39.27190 -38.76409 -35.78465 -35.09670 -34.95997 -32.96844 -32.22035 -31.20415 -30.09043 -29.06407 -25.90340 -25.67393 -25.09874 -23.70638 -23.00211 -22.43076 -21.29178 -20.76214 -19.50515 -19.07293 -18.39760 -17.99175 -17.29072 -17.09437 -16.81117 -16.58022 -15.73257 -15.70750 -15.28265 -15.22486 -14.98909 -14.71661 -14.60883 -14.49424 -14.02839 -13.86248 -13.75035 -13.55574 -13.47106 -12.90475 -12.78768 -12.68878 -12.32096 -12.21815 -12.12083 -12.00791 -11.96627 -11.60319 -11.40116 -11.07941 -10.96593 -10.82412 -10.70009 -10.68548 -9.89092 -9.09587 -8.96556 -7.88372 -5.17342 -0.58506 -0.22380 0.90993 1.02298 1.49081 1.50359 1.58504 2.14724 2.35072 2.58945 2.63766 2.83509 2.99956 3.45213 3.52303 3.73189 3.84701 3.85920 3.95735 4.09404 4.15660 4.28828 4.33997 4.36456 4.45926 4.48581 4.56702 4.60578 4.65352 4.74310 4.98785 4.99910 5.05257 5.10086 5.22643 5.27726 5.33209 5.34763 5.41831 5.50901 5.56275 5.62379 5.76916 6.16546 6.30825 6.60443 6.76051 7.37395 7.44552 8.12055 8.36712 9.34998 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003992 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.041932 B = 7011.888493 C = 9032.204864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.075 4.075 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.303 1.303 6 H -0.264 1.264 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.732 5.732 10 C 0.174 3.826 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.152 3.848 17 H 0.048 0.952 18 N -0.702 5.702 19 C 0.593 3.407 20 O -0.584 6.584 21 C -0.328 4.328 22 C 0.138 3.862 23 N -0.328 5.328 24 N -0.311 5.311 25 C 0.147 3.853 26 C -0.195 4.195 27 C 0.186 3.814 28 N -0.500 5.500 29 C 0.303 3.697 30 H 0.246 0.754 31 H 0.367 0.633 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.405 0.595 41 H 0.224 0.776 42 H 0.222 0.778 43 H 0.229 0.771 44 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 -15.134 15.502 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.230 1.230 6 H -0.188 1.188 7 C -0.359 4.359 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.065 3.935 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.047 3.953 17 H 0.066 0.934 18 N -0.351 5.351 19 C 0.382 3.618 20 O -0.465 6.465 21 C -0.344 4.344 22 C -0.043 4.043 23 N -0.149 5.149 24 N -0.080 5.080 25 C 0.013 3.987 26 C -0.217 4.217 27 C 0.007 3.993 28 N -0.213 5.213 29 C 0.069 3.931 30 H 0.055 0.945 31 H 0.198 0.802 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.240 0.760 41 H 0.240 0.760 42 H 0.238 0.762 43 H 0.246 0.754 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.654 -15.224 15.344 21.777 hybrid contribution -0.082 1.673 -0.244 1.692 sum -2.737 -13.551 15.100 20.473 Atomic orbital electron populations 1.69867 1.06825 1.25581 1.60075 1.25492 0.96069 1.00894 1.04273 0.85208 0.77905 0.79934 0.77128 1.22027 1.22978 1.18823 1.19615 0.91450 0.84785 1.40087 0.90023 1.42608 1.05128 1.00822 1.88495 1.20668 0.93823 0.84175 0.94837 0.92072 1.22093 0.99454 0.97545 0.97796 1.21511 0.98352 0.93220 1.01556 1.21479 0.99788 0.99136 0.94391 1.21803 0.99946 0.95060 0.98498 1.21119 0.97430 0.94981 0.81780 0.93398 1.45565 1.25012 1.49482 1.15045 1.17052 0.80387 0.79465 0.84883 1.90741 1.52099 1.38938 1.64756 1.19501 1.01180 1.15729 0.98018 1.24444 0.98866 0.92386 0.88596 1.77486 0.96270 1.18299 1.22892 1.47288 1.18089 1.30991 1.11601 1.23201 0.84520 0.95506 0.95468 1.22592 1.00405 0.98789 0.99920 1.24555 0.93737 0.92392 0.88642 1.68378 1.02392 1.15029 1.35487 1.20489 0.94819 0.92656 0.85094 0.94507 0.80204 0.94277 0.92959 0.90797 0.90762 0.93027 0.89453 0.90179 0.92960 0.75990 0.75965 0.76158 0.75440 0.76183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -12.28 9.93 84.03 0.83 -11.45 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.70 4.95 -322.94 -1.60 -38.30 16 10 C 0.17 6.76 2.29 44.99 0.10 6.87 16 11 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 12 C -0.13 -4.54 5.50 30.59 0.17 -4.37 16 13 C -0.11 -2.82 5.92 30.60 0.18 -2.64 16 14 C -0.11 -2.82 5.92 30.60 0.18 -2.64 16 15 C -0.11 -3.39 5.49 30.60 0.17 -3.22 16 16 C 0.15 5.66 1.98 44.99 0.09 5.75 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.70 -26.03 4.90 -446.57 -2.19 -28.22 16 19 C 0.59 24.49 7.75 86.42 0.67 25.16 16 20 O -0.58 -28.09 16.40 -4.39 -0.07 -28.16 16 21 C -0.33 -11.99 6.17 -19.89 -0.12 -12.11 16 22 C 0.14 4.22 11.44 85.45 0.98 5.20 16 23 N -0.33 -9.60 12.58 -56.59 -0.71 -10.31 16 24 N -0.31 -8.21 3.86 -191.78 -0.74 -8.95 16 25 C 0.15 2.02 11.29 83.42 0.94 2.97 16 26 C -0.19 -1.55 10.05 22.11 0.22 -1.33 16 27 C 0.19 2.89 11.28 85.16 0.96 3.85 16 28 N -0.50 -15.20 10.26 -191.87 -1.97 -17.17 16 29 C 0.30 10.13 7.74 133.98 1.04 11.16 16 30 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.37 21.00 7.80 -92.70 -0.72 20.28 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.40 13.65 7.52 -92.71 -0.70 12.95 16 41 H 0.22 5.43 7.46 -2.91 -0.02 5.41 16 42 H 0.22 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.23 -0.88 8.06 -2.91 -0.02 -0.90 16 44 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -87.18 369.04 1.53 -85.65 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.38 Total: 38.54 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.88 Total: 19.36 kcal Atomic # 7 Polarization: -156.64 SS G_CDS: -6.93 Total: -163.57 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.07 Total: -28.16 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -87.18 1.53 -85.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085294011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.169 kcal (2) G-P(sol) polarization free energy of solvation -87.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds