Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47205 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.46938 * 30.00130 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99961 * 3 2 1 7 7 C 1.38807 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99952 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00300 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00259 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46691 * 35.00496 * 10 9 7 12 12 C 1.52999 * 109.47121 * 275.00906 * 10 9 7 13 13 C 1.52999 * 109.47031 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47264 * 59.99703 * 13 12 10 15 15 C 1.53003 * 109.46878 * 299.99879 * 14 13 12 16 16 C 1.52996 * 109.46977 * 155.00284 * 10 9 7 17 17 H 1.08999 * 109.47237 * 60.00546 * 16 10 9 18 18 N 1.46493 * 109.47222 * 299.99833 * 16 10 9 19 19 C 1.34784 * 119.99864 * 155.00033 * 18 16 10 20 20 O 1.21561 * 119.99531 * 359.72923 * 19 18 16 21 21 C 1.47798 * 120.00162 * 179.72644 * 19 18 16 22 22 N 1.32293 * 120.58784 * 359.72158 * 21 19 18 23 23 C 1.32697 * 121.18869 * 179.76218 * 22 21 19 24 24 C 1.35483 * 122.10839 * 0.53051 * 23 22 21 25 25 N 1.36219 * 120.52430 * 359.73615 * 24 23 22 26 26 C 1.36163 * 133.92463 * 180.02562 * 25 24 23 27 27 C 1.35343 * 107.14317 * 179.97438 * 26 25 24 28 28 N 1.33559 * 108.61005 * 0.02562 * 27 26 25 29 29 C 1.31855 * 109.14814 * 359.97438 * 28 27 26 30 30 H 0.97008 * 119.99401 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99658 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47830 * 59.99663 * 12 10 9 33 33 H 1.09010 * 109.46539 * 299.99580 * 12 10 9 34 34 H 1.08993 * 109.46921 * 299.99232 * 13 12 10 35 35 H 1.09003 * 109.47127 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46884 * 180.02562 * 14 13 12 37 37 H 1.08993 * 109.47536 * 59.99905 * 14 13 12 38 38 H 1.09005 * 109.47324 * 300.00019 * 15 14 13 39 39 H 1.09008 * 109.46891 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00740 * 334.72725 * 18 16 10 41 41 H 1.07997 * 118.94788 * 180.26700 * 23 22 21 42 42 H 1.08002 * 119.73581 * 179.72166 * 24 23 22 43 43 H 1.07997 * 126.43026 * 359.94418 * 26 25 24 44 44 H 1.07994 * 125.69545 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5645 -3.2065 -0.5891 12 6 4.2586 -2.9753 1.4370 13 6 5.0241 -4.3000 1.4371 14 6 6.4111 -4.0875 0.8272 15 6 6.2645 -3.5832 -0.6099 16 6 5.4991 -2.2591 -0.6101 17 1 6.0467 -1.5235 -0.0210 18 7 5.3587 -1.7763 -1.9861 19 6 6.3479 -1.0566 -2.5519 20 8 7.3543 -0.8039 -1.9188 21 6 6.2089 -0.5746 -3.9422 22 7 5.1210 -0.8475 -4.6437 23 6 4.9817 -0.4169 -5.8911 24 6 5.9408 0.3101 -6.5133 25 7 7.0951 0.6314 -5.8652 26 6 8.2113 1.3291 -6.2136 27 6 9.0384 1.3193 -5.1423 28 7 8.4519 0.6342 -4.1572 29 6 7.2743 0.2072 -4.5689 30 1 -0.4850 0.8402 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.2705 -3.1262 1.8717 33 1 4.8062 -2.2395 2.0262 34 1 4.4769 -5.0358 0.8479 35 1 5.1289 -4.6591 2.4609 36 1 6.9563 -5.0314 0.8269 37 1 6.9583 -3.3517 1.4164 38 1 5.7173 -4.3191 -1.1991 39 1 7.2527 -3.4323 -1.0445 40 1 4.5556 -1.9779 -2.4914 41 1 4.0766 -0.6571 -6.4290 42 1 5.7892 0.6372 -7.5314 43 1 8.4012 1.8012 -7.1661 44 1 10.0104 1.7873 -5.0925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085336340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = 81.915902 kcal Electronic energy + Delta-G solvation = -28335.197942 eV Core-core repulsion = 24482.356629 eV Total energy + Delta-G solvation = -3852.841313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.21813 -39.89315 -38.63663 -37.76479 -34.51060 -34.12723 -33.78395 -31.32802 -30.89956 -29.90347 -29.24965 -28.10767 -25.64581 -23.50830 -23.44934 -22.74477 -21.89595 -20.94533 -20.43892 -19.77312 -18.82109 -18.25213 -17.51451 -16.45667 -16.37125 -15.96046 -15.69366 -15.13981 -14.79167 -14.65541 -14.37927 -14.11926 -13.99696 -13.62974 -13.47750 -13.28970 -13.10907 -12.96902 -12.58618 -12.27752 -12.21305 -11.69165 -11.33752 -10.98544 -10.89793 -10.82353 -10.60578 -10.50664 -10.36675 -10.31010 -10.09091 -9.85989 -9.65130 -9.57634 -9.24657 -8.92194 -8.70327 -8.44486 -7.26628 -5.76846 -3.11916 -0.14798 0.95095 2.03518 2.53170 2.72343 3.05263 3.39287 3.45271 3.47657 3.59784 3.72403 3.86271 4.03197 4.34273 4.60601 4.77689 4.89266 4.95425 5.00693 5.07463 5.11095 5.26981 5.44512 5.49478 5.51832 5.63235 5.71559 5.77582 5.83876 5.90981 5.95272 6.08538 6.22764 6.28765 6.40005 6.42997 6.43809 6.46049 6.50390 6.77583 6.85212 7.01099 7.20182 7.57171 7.81760 7.98788 8.39213 8.42176 9.20544 9.93716 10.13154 11.41299 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.004504 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.813182 B = 6214.644962 C = 7905.531399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.009 3.991 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.179 3.821 11 H 0.062 0.938 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.137 3.863 17 H 0.087 0.913 18 N -0.687 5.687 19 C 0.569 3.431 20 O -0.505 6.505 21 C 0.185 3.815 22 N -0.420 5.420 23 C 0.036 3.964 24 C 0.028 3.972 25 N -0.356 5.356 26 C -0.084 4.084 27 C 0.030 3.970 28 N -0.434 5.434 29 C 0.192 3.808 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.415 0.585 41 H 0.187 0.813 42 H 0.176 0.824 43 H 0.190 0.810 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.246 -3.263 -13.913 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.389 5.389 10 C 0.069 3.931 11 H 0.080 0.920 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.032 3.968 17 H 0.105 0.895 18 N -0.338 5.338 19 C 0.351 3.649 20 O -0.378 6.378 21 C 0.019 3.981 22 N -0.135 5.135 23 C -0.105 4.105 24 C -0.098 4.098 25 N -0.031 5.031 26 C -0.218 4.218 27 C -0.122 4.122 28 N -0.154 5.154 29 C -0.056 4.056 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.252 0.748 41 H 0.204 0.796 42 H 0.193 0.807 43 H 0.207 0.793 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 15.276 -3.715 -12.522 20.098 hybrid contribution 0.363 2.067 -1.733 2.721 sum 15.639 -1.648 -14.254 21.224 Atomic orbital electron populations 1.69698 1.05030 1.25710 1.57641 1.24601 0.95102 0.96942 1.02026 0.86650 0.79383 0.85358 0.77750 1.21339 1.21795 1.20267 1.19040 0.80413 0.94629 1.42875 0.89044 1.42798 1.04028 1.01846 1.90188 1.20443 0.89041 0.89603 0.94062 0.92037 1.22183 1.00550 0.95535 0.99085 1.21580 0.95605 0.98424 1.00172 1.21480 0.97511 1.00618 0.95580 1.21869 1.00450 0.96567 0.97450 1.21453 0.98192 0.95756 0.81412 0.89502 1.45796 1.20137 1.52553 1.15310 1.17219 0.84313 0.79629 0.83765 1.90874 1.28905 1.56324 1.61672 1.22353 0.86572 0.93726 0.95470 1.68161 1.19892 1.18262 1.07182 1.22187 0.99521 0.97539 0.91234 1.22769 0.85597 1.00944 1.00441 1.42899 1.13119 1.34111 1.12936 1.22777 0.87802 1.07359 1.03846 1.22908 1.00740 0.99942 0.88621 1.70683 1.03542 1.12925 1.28228 1.22554 0.96296 1.03706 0.83052 0.93137 0.80551 0.91031 0.92492 0.92139 0.92504 0.92213 0.91910 0.91673 0.91686 0.74842 0.79618 0.80682 0.79315 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 22.66 27.74 -169.99 -4.71 17.95 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 6 H -0.28 -6.93 6.52 56.52 0.37 -6.56 16 7 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.75 -17.18 4.76 -53.43 -0.25 -17.43 16 10 C 0.18 3.28 2.29 -67.93 -0.16 3.13 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.13 -2.23 5.50 -26.73 -0.15 -2.38 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.73 5.49 -26.75 -0.15 -1.88 16 16 C 0.14 2.28 1.98 -67.96 -0.13 2.14 16 17 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 18 N -0.69 -11.61 4.90 -54.79 -0.27 -11.88 16 19 C 0.57 10.25 7.78 -12.35 -0.10 10.15 16 20 O -0.50 -10.32 15.89 5.31 0.08 -10.24 16 21 C 0.18 3.01 6.97 -80.54 -0.56 2.45 16 22 N -0.42 -5.95 9.67 -8.68 -0.08 -6.03 16 23 C 0.04 0.36 11.01 -18.16 -0.20 0.16 16 24 C 0.03 0.24 11.00 -16.59 -0.18 0.06 16 25 N -0.36 -4.15 2.95 -61.12 -0.18 -4.33 16 26 C -0.08 -0.78 11.80 -16.66 -0.20 -0.98 16 27 C 0.03 0.34 11.83 -17.83 -0.21 0.13 16 28 N -0.43 -7.06 10.74 -11.29 -0.12 -7.18 16 29 C 0.19 3.00 7.66 -153.99 -1.18 1.82 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.65 5.66 -40.82 -0.23 8.42 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.41 6.88 7.98 -40.82 -0.33 6.56 16 41 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.19 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -35.95 365.44 -9.07 -45.02 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.03 Total: 11.81 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -3.78 Total: 4.96 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -0.13 Total: -75.00 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.95 -9.07 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085336340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.933 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds