Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47205 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.46938 * 30.00130 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99961 * 3 2 1 7 7 C 1.38807 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99952 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00300 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00259 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46691 * 35.00496 * 10 9 7 12 12 C 1.52999 * 109.47121 * 275.00906 * 10 9 7 13 13 C 1.52999 * 109.47031 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47264 * 59.99703 * 13 12 10 15 15 C 1.53003 * 109.46878 * 299.99879 * 14 13 12 16 16 C 1.52996 * 109.46977 * 155.00284 * 10 9 7 17 17 H 1.08999 * 109.47237 * 60.00546 * 16 10 9 18 18 N 1.46493 * 109.47222 * 299.99833 * 16 10 9 19 19 C 1.34784 * 119.99864 * 155.00033 * 18 16 10 20 20 O 1.21561 * 119.99531 * 359.72923 * 19 18 16 21 21 C 1.47798 * 120.00162 * 179.72644 * 19 18 16 22 22 N 1.32293 * 120.58784 * 359.72158 * 21 19 18 23 23 C 1.32697 * 121.18869 * 179.76218 * 22 21 19 24 24 C 1.35483 * 122.10839 * 0.53051 * 23 22 21 25 25 N 1.36219 * 120.52430 * 359.73615 * 24 23 22 26 26 C 1.36163 * 133.92463 * 180.02562 * 25 24 23 27 27 C 1.35343 * 107.14317 * 179.97438 * 26 25 24 28 28 N 1.33559 * 108.61005 * 0.02562 * 27 26 25 29 29 C 1.31855 * 109.14814 * 359.97438 * 28 27 26 30 30 H 0.97008 * 119.99401 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99658 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47830 * 59.99663 * 12 10 9 33 33 H 1.09010 * 109.46539 * 299.99580 * 12 10 9 34 34 H 1.08993 * 109.46921 * 299.99232 * 13 12 10 35 35 H 1.09003 * 109.47127 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46884 * 180.02562 * 14 13 12 37 37 H 1.08993 * 109.47536 * 59.99905 * 14 13 12 38 38 H 1.09005 * 109.47324 * 300.00019 * 15 14 13 39 39 H 1.09008 * 109.46891 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00740 * 334.72725 * 18 16 10 41 41 H 1.07997 * 118.94788 * 180.26700 * 23 22 21 42 42 H 1.08002 * 119.73581 * 179.72166 * 24 23 22 43 43 H 1.07997 * 126.43026 * 359.94418 * 26 25 24 44 44 H 1.07994 * 125.69545 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5645 -3.2065 -0.5891 12 6 4.2586 -2.9753 1.4370 13 6 5.0241 -4.3000 1.4371 14 6 6.4111 -4.0875 0.8272 15 6 6.2645 -3.5832 -0.6099 16 6 5.4991 -2.2591 -0.6101 17 1 6.0467 -1.5235 -0.0210 18 7 5.3587 -1.7763 -1.9861 19 6 6.3479 -1.0566 -2.5519 20 8 7.3543 -0.8039 -1.9188 21 6 6.2089 -0.5746 -3.9422 22 7 5.1210 -0.8475 -4.6437 23 6 4.9817 -0.4169 -5.8911 24 6 5.9408 0.3101 -6.5133 25 7 7.0951 0.6314 -5.8652 26 6 8.2113 1.3291 -6.2136 27 6 9.0384 1.3193 -5.1423 28 7 8.4519 0.6342 -4.1572 29 6 7.2743 0.2072 -4.5689 30 1 -0.4850 0.8402 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.2705 -3.1262 1.8717 33 1 4.8062 -2.2395 2.0262 34 1 4.4769 -5.0358 0.8479 35 1 5.1289 -4.6591 2.4609 36 1 6.9563 -5.0314 0.8269 37 1 6.9583 -3.3517 1.4164 38 1 5.7173 -4.3191 -1.1991 39 1 7.2527 -3.4323 -1.0445 40 1 4.5556 -1.9779 -2.4914 41 1 4.0766 -0.6571 -6.4290 42 1 5.7892 0.6372 -7.5314 43 1 8.4012 1.8012 -7.1661 44 1 10.0104 1.7873 -5.0925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085336340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = 56.026001 kcal Electronic energy + Delta-G solvation = -28336.320613 eV Core-core repulsion = 24482.356629 eV Total energy + Delta-G solvation = -3853.963983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.08257 -41.20205 -39.65040 -39.05097 -35.94017 -35.49146 -35.08840 -33.33198 -31.83032 -30.86752 -30.44901 -29.61860 -26.65623 -25.32117 -24.38756 -23.85861 -22.91097 -22.45912 -21.68067 -21.02733 -19.91791 -19.62847 -19.07507 -17.58316 -17.37240 -17.08078 -16.81417 -16.50291 -16.17931 -15.97910 -15.55028 -15.25759 -15.07090 -14.85431 -14.76355 -14.68583 -14.47050 -14.18204 -13.99316 -13.66850 -13.66214 -13.08528 -12.98898 -12.67558 -12.42103 -12.18645 -12.08638 -11.84491 -11.75506 -11.53712 -11.46377 -11.36636 -11.13182 -11.02920 -10.84426 -10.16156 -10.01019 -9.31049 -9.27245 -8.02456 -5.33123 -1.07995 0.09479 1.21279 1.30710 1.33597 1.38681 1.50742 1.81557 1.94650 2.44151 2.51988 2.81261 2.92043 3.21486 3.29867 3.45293 3.68225 3.74785 3.96534 4.10525 4.15252 4.18300 4.25497 4.31319 4.34059 4.41607 4.45558 4.58061 4.67182 4.71002 4.95418 4.99656 5.03115 5.11345 5.24319 5.29237 5.30702 5.41951 5.45092 5.51879 5.63646 5.68218 5.79327 6.22017 6.25289 6.52814 6.72945 7.06169 7.08140 7.83104 8.01223 9.19069 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.004504 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.813182 B = 6214.644962 C = 7905.531399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.050 4.050 3 Si 0.935 3.065 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.212 4.212 8 H 0.070 0.930 9 N -0.750 5.750 10 C 0.177 3.823 11 H 0.062 0.938 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.116 4.116 16 C 0.143 3.857 17 H 0.065 0.935 18 N -0.687 5.687 19 C 0.567 3.433 20 O -0.543 6.543 21 C 0.132 3.868 22 N -0.426 5.426 23 C 0.007 3.993 24 C 0.064 3.936 25 N -0.360 5.360 26 C -0.058 4.058 27 C 0.010 3.990 28 N -0.491 5.491 29 C 0.160 3.840 30 H 0.256 0.744 31 H 0.357 0.643 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.415 0.585 41 H 0.223 0.777 42 H 0.237 0.763 43 H 0.245 0.755 44 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.776 -3.213 -16.779 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.242 4.242 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.343 4.343 8 H 0.088 0.912 9 N -0.392 5.392 10 C 0.068 3.932 11 H 0.080 0.920 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.155 4.155 16 C 0.038 3.962 17 H 0.084 0.916 18 N -0.337 5.337 19 C 0.351 3.649 20 O -0.419 6.419 21 C -0.031 4.031 22 N -0.142 5.142 23 C -0.134 4.134 24 C -0.061 4.061 25 N -0.035 5.035 26 C -0.190 4.190 27 C -0.141 4.141 28 N -0.212 5.212 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.190 0.810 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.251 0.749 41 H 0.239 0.761 42 H 0.253 0.747 43 H 0.261 0.739 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 16.862 -3.704 -15.368 23.113 hybrid contribution -0.077 2.040 -1.045 2.293 sum 16.785 -1.664 -16.413 23.535 Atomic orbital electron populations 1.69829 1.06506 1.26162 1.60392 1.25166 0.95716 0.99831 1.03486 0.85715 0.78394 0.81888 0.77498 1.21455 1.22109 1.19456 1.19023 0.82073 0.93505 1.39736 0.91205 1.42850 1.02701 1.03493 1.90125 1.20661 0.89514 0.87553 0.95430 0.91958 1.22062 1.00052 0.97640 0.97110 1.21519 0.95402 0.96155 1.01752 1.21479 0.97279 1.01831 0.94109 1.21814 0.99681 0.95079 0.98893 1.21354 0.96839 0.96809 0.81159 0.91641 1.45794 1.20079 1.52624 1.15200 1.17572 0.83658 0.78872 0.84781 1.90820 1.30218 1.57852 1.63053 1.21823 0.88582 0.97579 0.95149 1.68042 1.19196 1.17959 1.08987 1.22914 1.01671 0.98564 0.90238 1.23726 0.83227 0.97183 1.01933 1.43259 1.14469 1.33905 1.11875 1.23643 0.85776 1.04830 1.04792 1.23587 1.02258 0.99733 0.88508 1.70586 1.04799 1.14906 1.30923 1.22424 0.96338 1.04955 0.85011 0.93493 0.81031 0.93033 0.93146 0.91132 0.90542 0.89371 0.92321 0.90331 0.92291 0.74853 0.76057 0.74710 0.73926 0.76798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.20 13.97 21.65 0.30 -61.90 16 2 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 3 Si 0.94 48.00 27.74 68.60 1.90 49.90 16 4 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.27 -13.27 6.52 99.48 0.65 -12.62 16 7 C -0.21 -11.84 10.41 84.03 0.87 -10.96 16 8 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 9 N -0.75 -35.25 4.76 -322.94 -1.54 -36.79 16 10 C 0.18 6.59 2.29 44.99 0.10 6.70 16 11 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 12 C -0.13 -4.30 5.50 30.59 0.17 -4.13 16 13 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 14 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 15 C -0.12 -3.16 5.49 30.58 0.17 -2.99 16 16 C 0.14 4.90 1.98 44.97 0.09 4.98 16 17 H 0.07 2.53 7.57 -2.39 -0.02 2.51 16 18 N -0.69 -24.19 4.90 -445.54 -2.18 -26.38 16 19 C 0.57 21.61 7.78 86.77 0.68 22.28 16 20 O -0.54 -23.72 15.89 -3.91 -0.06 -23.78 16 21 C 0.13 4.45 6.97 43.69 0.30 4.76 16 22 N -0.43 -12.01 9.67 -181.37 -1.75 -13.76 16 23 C 0.01 0.13 11.01 83.92 0.92 1.05 16 24 C 0.06 0.84 11.00 83.37 0.92 1.75 16 25 N -0.36 -7.34 2.95 -347.30 -1.02 -8.36 16 26 C -0.06 -0.84 11.80 83.35 0.98 0.14 16 27 C 0.01 0.21 11.83 83.76 0.99 1.20 16 28 N -0.49 -16.26 10.74 -189.62 -2.04 -18.30 16 29 C 0.16 5.02 7.66 135.58 1.04 6.06 16 30 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 31 H 0.36 17.44 5.66 -92.70 -0.52 16.91 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.41 14.33 7.98 -92.71 -0.74 13.59 16 41 H 0.22 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.24 0.11 8.06 -2.91 -0.02 0.09 16 43 H 0.24 0.65 8.06 -2.91 -0.02 0.62 16 44 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -84.97 365.44 1.39 -83.58 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.28 Total: 32.35 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 8.07 Total: 23.44 kcal Atomic # 7 Polarization: -157.25 SS G_CDS: -8.23 Total: -165.49 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.90 Total: 49.90 kcal Total: -84.97 1.39 -83.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085336340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.601 kcal (2) G-P(sol) polarization free energy of solvation -84.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds