Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48495 * 109.46996 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47377 * 29.99723 * 3 2 1 6 6 H 1.48504 * 109.47230 * 149.99834 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21547 * 120.00429 * 0.02562 * 19 18 16 21 21 C 1.47889 * 119.99768 * 179.97438 * 19 18 16 22 22 C 1.39899 * 125.69630 * 179.71996 * 21 19 18 23 23 C 1.38581 * 107.59262 * 179.83642 * 22 21 19 24 24 N 1.34111 * 132.34120 * 180.02562 * 23 22 21 25 25 C 1.31136 * 120.84045 * 180.38436 * 24 23 22 26 26 C 1.40344 * 120.29831 * 359.97438 * 25 24 23 27 27 C 1.35457 * 119.46236 * 359.97438 * 26 25 24 28 28 N 1.36673 * 119.13870 * 0.02562 * 27 26 25 29 29 N 1.32376 * 125.68988 * 0.02562 * 21 19 18 30 30 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.08003 * 126.20017 * 359.97438 * 22 21 19 42 42 H 1.07997 * 119.85045 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.27054 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.42688 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5650 -3.2062 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0233 -4.3005 1.4380 14 6 6.4107 -4.0877 0.8291 15 6 6.2651 -3.5828 -0.6078 16 6 5.4996 -2.2581 -0.6078 17 1 6.0464 -1.5225 -0.0179 18 7 5.3607 -1.7744 -1.9837 19 6 6.3502 -1.0540 -2.5478 20 8 7.3581 -0.8059 -1.9152 21 6 6.2103 -0.5661 -3.9368 22 6 7.1560 0.1927 -4.6347 23 6 6.6452 0.4385 -5.8993 24 7 7.1313 1.1066 -6.9556 25 6 6.4385 1.2069 -8.0645 26 6 5.1709 0.6127 -8.1635 27 6 4.6686 -0.0659 -7.1043 28 7 5.4099 -0.1563 -5.9597 29 7 5.1668 -0.7699 -4.7255 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3621 0.0014 32 1 4.8048 -2.2403 2.0278 33 1 3.2693 -3.1268 1.8719 34 1 5.1273 -4.6599 2.4617 35 1 4.4764 -5.0361 0.8481 36 1 6.9575 -3.3521 1.4190 37 1 6.9561 -5.0314 0.8295 38 1 5.7183 -4.3185 -1.1977 39 1 7.2535 -3.4317 -1.0417 40 1 4.5565 -1.9727 -2.4886 41 1 8.1118 0.5247 -4.2571 42 1 6.8455 1.7484 -8.9056 43 1 4.6005 0.6959 -9.0769 44 1 3.6946 -0.5288 -7.1633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085369124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = 90.526121 kcal Electronic energy + Delta-G solvation = -27933.105030 eV Core-core repulsion = 24080.637084 eV Total energy + Delta-G solvation = -3852.467946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52220 -39.92868 -38.40015 -37.58065 -34.29485 -34.18501 -33.94050 -31.53789 -31.33560 -29.46158 -29.33549 -28.19909 -25.47460 -24.20722 -23.48912 -22.92109 -21.63710 -20.99534 -20.20731 -19.61891 -18.52879 -17.98043 -17.63351 -16.83311 -16.34036 -16.02445 -15.69248 -15.04435 -14.78133 -14.69895 -14.35516 -14.03758 -13.70639 -13.55479 -13.48228 -13.32330 -13.12286 -12.82025 -12.62372 -12.32207 -12.26180 -11.52569 -11.49971 -11.38213 -11.02050 -10.94968 -10.86776 -10.65413 -10.38455 -10.21607 -10.12988 -10.06956 -9.79657 -9.73942 -9.61205 -8.96354 -8.78675 -8.20308 -7.30692 -5.80215 -3.15735 0.20011 0.49082 1.70399 1.73250 3.08203 3.10662 3.36939 3.40089 3.42213 3.45198 3.61040 3.86432 4.08083 4.53353 4.57436 4.66167 4.90005 4.97632 5.02589 5.08538 5.20852 5.24784 5.39830 5.46448 5.50641 5.58285 5.66450 5.69441 5.75260 5.85607 5.90292 6.03473 6.04442 6.16457 6.22721 6.34240 6.38128 6.41058 6.45100 6.69550 6.80623 6.93309 7.02247 7.29274 7.70975 7.94919 8.27160 8.38637 9.16759 9.89863 10.09061 11.37851 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.004110 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.256567 B = 6811.758840 C = 8683.558625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.135 3.865 17 H 0.088 0.912 18 N -0.691 5.691 19 C 0.597 3.403 20 O -0.526 6.526 21 C 0.077 3.923 22 C -0.201 4.201 23 C 0.246 3.754 24 N -0.458 5.458 25 C 0.177 3.823 26 C -0.225 4.225 27 C 0.166 3.834 28 N -0.306 5.306 29 N -0.267 5.267 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.413 0.587 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -3.905 -15.047 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.031 3.969 17 H 0.106 0.894 18 N -0.340 5.340 19 C 0.379 3.621 20 O -0.401 6.401 21 C -0.083 4.083 22 C -0.232 4.232 23 C 0.020 3.980 24 N -0.168 5.168 25 C -0.008 4.008 26 C -0.249 4.249 27 C 0.032 3.968 28 N -0.080 5.080 29 N -0.096 5.096 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.249 0.751 41 H 0.190 0.810 42 H 0.198 0.802 43 H 0.187 0.813 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 13.002 -4.064 -14.213 19.687 hybrid contribution -0.075 1.325 -0.441 1.399 sum 12.927 -2.739 -14.654 19.732 Atomic orbital electron populations 1.69694 1.05042 1.25772 1.57490 1.24611 0.95120 0.96990 1.01928 0.86642 0.79366 0.85304 0.77774 1.21316 1.21717 1.20265 1.19033 0.80398 0.94644 1.43094 0.89063 1.42798 1.04050 1.01821 1.90222 1.20449 0.88985 0.89621 0.94134 0.92084 1.22182 1.00599 0.95545 0.99021 1.21585 0.95585 0.98419 1.00223 1.21480 0.97538 1.00654 0.95517 1.21872 1.00427 0.96516 0.97519 1.21491 0.98293 0.95811 0.81345 0.89432 1.45890 1.19972 1.52578 1.15602 1.16839 0.83830 0.78500 0.82926 1.90795 1.29483 1.57923 1.61902 1.22231 0.92432 0.98120 0.95490 1.20964 1.03542 1.08461 0.90261 1.20537 0.84933 0.96726 0.95826 1.68245 1.33581 1.16092 0.98919 1.23435 0.90217 0.92507 0.94685 1.21858 0.99382 1.03474 1.00229 1.22162 0.97287 0.95462 0.81884 1.47194 1.14288 1.35724 1.10774 1.78248 1.21564 1.21254 0.88555 0.93094 0.80545 0.92463 0.90994 0.92441 0.92135 0.91898 0.92151 0.91667 0.91663 0.75119 0.81017 0.80205 0.81338 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 22.67 27.74 -169.99 -4.71 17.96 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 7 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.75 -17.17 4.76 -53.42 -0.25 -17.42 16 10 C 0.18 3.26 2.29 -67.93 -0.16 3.11 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 15 C -0.12 -1.70 5.49 -26.74 -0.15 -1.85 16 16 C 0.14 2.23 1.97 -67.93 -0.13 2.09 16 17 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 18 N -0.69 -11.63 4.91 -54.73 -0.27 -11.90 16 19 C 0.60 10.51 7.80 -12.31 -0.10 10.42 16 20 O -0.53 -10.20 16.54 5.32 0.09 -10.11 16 21 C 0.08 1.29 7.05 -83.06 -0.59 0.70 16 22 C -0.20 -3.10 10.65 -38.83 -0.41 -3.52 16 23 C 0.25 3.47 7.90 -155.43 -1.23 2.24 16 24 N -0.46 -5.39 10.48 -12.23 -0.13 -5.52 16 25 C 0.18 1.27 11.27 -17.06 -0.19 1.08 16 26 C -0.23 -1.30 10.05 -39.78 -0.40 -1.70 16 27 C 0.17 1.46 11.30 -16.39 -0.19 1.27 16 28 N -0.31 -4.14 3.90 -12.20 -0.05 -4.19 16 29 N -0.27 -4.28 12.34 33.23 0.41 -3.87 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.36 8.62 5.66 -40.82 -0.23 8.38 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.41 6.94 8.29 -40.82 -0.34 6.61 16 41 H 0.17 2.46 8.06 -52.48 -0.42 2.03 16 42 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -35.24 367.75 -8.90 -44.14 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.05 Total: 11.93 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -4.25 Total: 1.61 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: 0.49 Total: -71.08 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.24 -8.90 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085369124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.667 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds