Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48495 * 109.46996 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47377 * 29.99723 * 3 2 1 6 6 H 1.48504 * 109.47230 * 149.99834 * 3 2 1 7 7 C 1.38811 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99663 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 35.00483 * 10 9 7 12 12 C 1.52997 * 109.47235 * 275.00138 * 10 9 7 13 13 C 1.53002 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 59.99726 * 13 12 10 15 15 C 1.52992 * 109.47106 * 300.00123 * 14 13 12 16 16 C 1.52997 * 109.47482 * 60.00162 * 15 14 13 17 17 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 18 18 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 19 19 C 1.34769 * 119.99798 * 274.99913 * 18 16 15 20 20 O 1.21547 * 120.00429 * 0.02562 * 19 18 16 21 21 C 1.47889 * 119.99768 * 179.97438 * 19 18 16 22 22 C 1.39899 * 125.69630 * 179.71996 * 21 19 18 23 23 C 1.38581 * 107.59262 * 179.83642 * 22 21 19 24 24 N 1.34111 * 132.34120 * 180.02562 * 23 22 21 25 25 C 1.31136 * 120.84045 * 180.38436 * 24 23 22 26 26 C 1.40344 * 120.29831 * 359.97438 * 25 24 23 27 27 C 1.35457 * 119.46236 * 359.97438 * 26 25 24 28 28 N 1.36673 * 119.13870 * 0.02562 * 27 26 25 29 29 N 1.32376 * 125.68988 * 0.02562 * 21 19 18 30 30 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47045 * 300.00215 * 12 10 9 33 33 H 1.08998 * 109.47171 * 59.99556 * 12 10 9 34 34 H 1.08996 * 109.46698 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46838 * 299.99316 * 13 12 10 36 36 H 1.09002 * 109.47070 * 60.00059 * 14 13 12 37 37 H 1.08996 * 109.46550 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47103 * 299.99915 * 15 14 13 39 39 H 1.08998 * 109.46862 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99239 * 94.99888 * 18 16 15 41 41 H 1.08003 * 126.20017 * 359.97438 * 22 21 19 42 42 H 1.07997 * 119.85045 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.27054 * 179.97438 * 26 25 24 44 44 H 1.07993 * 120.42688 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5650 -3.2062 -0.5888 12 6 4.2577 -2.9758 1.4380 13 6 5.0233 -4.3005 1.4380 14 6 6.4107 -4.0877 0.8291 15 6 6.2651 -3.5828 -0.6078 16 6 5.4996 -2.2581 -0.6078 17 1 6.0464 -1.5225 -0.0179 18 7 5.3607 -1.7744 -1.9837 19 6 6.3502 -1.0540 -2.5478 20 8 7.3581 -0.8059 -1.9152 21 6 6.2103 -0.5661 -3.9368 22 6 7.1560 0.1927 -4.6347 23 6 6.6452 0.4385 -5.8993 24 7 7.1313 1.1066 -6.9556 25 6 6.4385 1.2069 -8.0645 26 6 5.1709 0.6127 -8.1635 27 6 4.6686 -0.0659 -7.1043 28 7 5.4099 -0.1563 -5.9597 29 7 5.1668 -0.7699 -4.7255 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3621 0.0014 32 1 4.8048 -2.2403 2.0278 33 1 3.2693 -3.1268 1.8719 34 1 5.1273 -4.6599 2.4617 35 1 4.4764 -5.0361 0.8481 36 1 6.9575 -3.3521 1.4190 37 1 6.9561 -5.0314 0.8295 38 1 5.7183 -4.3185 -1.1977 39 1 7.2535 -3.4317 -1.0417 40 1 4.5565 -1.9727 -2.4886 41 1 8.1118 0.5247 -4.2571 42 1 6.8455 1.7484 -8.9056 43 1 4.6005 0.6959 -9.0769 44 1 3.6946 -0.5288 -7.1633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085369124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = 65.404908 kcal Electronic energy + Delta-G solvation = -27934.194368 eV Core-core repulsion = 24080.637084 eV Total energy + Delta-G solvation = -3853.557283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45204 -41.24660 -39.54333 -38.70559 -35.97093 -35.30837 -35.12505 -33.37086 -32.41430 -30.71354 -30.30348 -29.74932 -26.46457 -25.36856 -25.07493 -23.93872 -22.86653 -22.47673 -21.48186 -20.87593 -19.84807 -19.31465 -18.88368 -17.78168 -17.33241 -17.24635 -16.87691 -16.63282 -16.10581 -16.01546 -15.46299 -15.22960 -15.09306 -14.82018 -14.73321 -14.60322 -14.46582 -13.91305 -13.84403 -13.68892 -13.60855 -13.11458 -13.01603 -12.53550 -12.44451 -12.39202 -12.21596 -12.11314 -11.87354 -11.80487 -11.52412 -11.45102 -11.11890 -10.99640 -10.94779 -10.69956 -10.14672 -9.34401 -9.17048 -8.05630 -5.36712 -0.56232 -0.36668 0.64366 0.83273 1.28964 1.31532 1.36537 1.88337 2.08675 2.36471 2.41461 2.79285 2.84868 3.26566 3.41518 3.53725 3.64044 3.74342 3.97769 4.07257 4.15109 4.18090 4.22650 4.33098 4.38806 4.40729 4.49198 4.55758 4.59014 4.64726 4.92979 4.95892 5.03277 5.04922 5.05642 5.22574 5.26976 5.27377 5.32725 5.41623 5.49182 5.60672 5.75904 5.97438 6.18832 6.37044 6.52191 6.91942 7.03576 7.79845 7.97649 9.15842 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.004110 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.256567 B = 6811.758840 C = 8683.558625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.051 4.051 3 Si 0.936 3.064 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.215 4.215 8 H 0.069 0.931 9 N -0.750 5.750 10 C 0.176 3.824 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.141 3.859 17 H 0.072 0.928 18 N -0.690 5.690 19 C 0.597 3.403 20 O -0.552 6.552 21 C 0.057 3.943 22 C -0.234 4.234 23 C 0.247 3.753 24 N -0.492 5.492 25 C 0.190 3.810 26 C -0.186 4.186 27 C 0.130 3.870 28 N -0.308 5.308 29 N -0.298 5.298 30 H 0.256 0.744 31 H 0.358 0.642 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.168 0.832 42 H 0.231 0.769 43 H 0.225 0.775 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.015 -4.082 -17.721 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.243 4.243 3 Si 0.766 3.234 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.346 4.346 8 H 0.087 0.913 9 N -0.392 5.392 10 C 0.067 3.933 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.156 4.156 16 C 0.037 3.963 17 H 0.090 0.910 18 N -0.339 5.339 19 C 0.381 3.619 20 O -0.429 6.429 21 C -0.101 4.101 22 C -0.266 4.266 23 C 0.019 3.981 24 N -0.204 5.204 25 C 0.007 3.993 26 C -0.209 4.209 27 C -0.002 4.002 28 N -0.082 5.082 29 N -0.128 5.128 30 H 0.065 0.935 31 H 0.191 0.809 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.248 0.752 41 H 0.186 0.814 42 H 0.247 0.753 43 H 0.241 0.759 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.213 -4.282 -16.901 22.494 hybrid contribution -0.469 1.387 0.059 1.465 sum 13.744 -2.895 -16.842 21.930 Atomic orbital electron populations 1.69829 1.06564 1.26230 1.60266 1.25198 0.95756 0.99965 1.03379 0.85695 0.78588 0.81722 0.77382 1.21776 1.21993 1.18996 1.19013 0.82138 0.93473 1.39944 0.91344 1.42845 1.02677 1.03531 1.90171 1.20674 0.89529 0.87512 0.95543 0.92222 1.22057 1.00079 0.97709 0.96985 1.21528 0.95498 0.96099 1.01794 1.21479 0.97191 1.01960 0.94040 1.21831 0.99833 0.94897 0.98992 1.21437 0.96940 0.97082 0.80865 0.91024 1.45910 1.19832 1.52519 1.15615 1.17016 0.83426 0.78023 0.83463 1.90756 1.30364 1.58960 1.62812 1.21988 0.93450 0.99513 0.95165 1.20990 1.03846 1.10186 0.91573 1.20628 0.85031 0.96392 0.96073 1.68375 1.34878 1.17413 0.99774 1.24503 0.90187 0.90434 0.94145 1.22584 0.98450 0.99277 1.00596 1.23052 0.98609 0.97241 0.81282 1.47397 1.14662 1.35090 1.11027 1.78090 1.21791 1.23038 0.89929 0.93465 0.80923 0.92896 0.93134 0.90483 0.91314 0.92036 0.89312 0.90530 0.91840 0.75228 0.81430 0.75261 0.75855 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.41 13.97 21.65 0.30 -62.11 16 2 C -0.05 -3.02 5.50 84.86 0.47 -2.56 16 3 Si 0.94 47.96 27.74 68.60 1.90 49.86 16 4 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 5 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 6 H -0.26 -12.85 6.52 99.48 0.65 -12.20 16 7 C -0.21 -11.99 10.41 84.03 0.87 -11.11 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 9 N -0.75 -35.04 4.76 -322.93 -1.54 -36.58 16 10 C 0.18 6.48 2.29 44.99 0.10 6.58 16 11 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 12 C -0.13 -4.21 5.50 30.59 0.17 -4.04 16 13 C -0.11 -2.68 5.92 30.60 0.18 -2.49 16 14 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 15 C -0.12 -3.05 5.49 30.59 0.17 -2.88 16 16 C 0.14 4.68 1.97 44.99 0.09 4.77 16 17 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.69 -23.97 4.91 -445.37 -2.19 -26.16 16 19 C 0.60 22.05 7.80 86.80 0.68 22.73 16 20 O -0.55 -22.37 16.54 -3.86 -0.06 -22.43 16 21 C 0.06 2.00 7.05 42.02 0.30 2.29 16 22 C -0.23 -7.64 10.65 22.75 0.24 -7.40 16 23 C 0.25 6.96 7.90 133.00 1.05 8.01 16 24 N -0.49 -10.67 10.48 -192.59 -2.02 -12.69 16 25 C 0.19 1.87 11.27 85.31 0.96 2.84 16 26 C -0.19 -1.21 10.05 22.14 0.22 -0.99 16 27 C 0.13 1.94 11.30 83.30 0.94 2.88 16 28 N -0.31 -8.19 3.90 -192.52 -0.75 -8.94 16 29 N -0.30 -9.87 12.34 -48.78 -0.60 -10.47 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.36 17.24 5.66 -92.71 -0.52 16.72 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.41 14.39 8.29 -92.70 -0.77 13.63 16 41 H 0.17 5.25 8.06 -2.91 -0.02 5.22 16 42 H 0.23 -0.14 8.06 -2.91 -0.02 -0.16 16 43 H 0.22 -0.98 8.06 -2.91 -0.02 -1.00 16 44 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -81.95 367.75 1.36 -80.59 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.31 Total: 32.54 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.62 Total: 16.38 kcal Atomic # 7 Polarization: -150.15 SS G_CDS: -6.79 Total: -156.94 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.90 Total: 49.86 kcal Total: -81.95 1.36 -80.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085369124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.990 kcal (2) G-P(sol) polarization free energy of solvation -81.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds