Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30066 * 124.94020 * 2 1 4 4 C 1.35771 * 109.42966 * 179.97438 * 3 2 1 5 5 C 1.39495 * 133.74001 * 180.26961 * 4 3 2 6 6 C 1.39672 * 118.04843 * 180.22226 * 5 4 3 7 7 C 1.47686 * 120.37835 * 179.73607 * 6 5 4 8 8 O 1.21577 * 120.00307 * 20.45125 * 7 6 5 9 9 N 1.34779 * 120.00220 * 200.44631 * 7 6 5 10 10 C 1.46505 * 119.99768 * 5.39718 * 9 7 6 11 11 C 1.46497 * 120.00706 * 185.39956 * 9 7 6 12 12 C 1.52998 * 109.47017 * 264.73869 * 11 9 7 13 13 H 1.09003 * 112.96705 * 295.06538 * 12 11 9 14 14 C 1.53950 * 113.76851 * 66.74640 * 12 11 9 15 15 C 1.53948 * 86.28833 * 137.91015 * 14 12 11 16 16 N 1.47585 * 113.77162 * 163.38481 * 12 11 9 17 17 C 1.36940 * 134.48623 * 41.06735 * 16 12 11 18 18 H 1.07999 * 120.00017 * 4.78448 * 17 16 12 19 19 C 1.38815 * 119.99676 * 184.77952 * 17 16 12 20 20 N 1.31617 * 119.99760 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99792 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47233 * 60.00309 * 21 19 17 23 23 H 1.48500 * 109.46848 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47157 * 299.99886 * 21 19 17 25 25 C 1.39984 * 119.23592 * 359.46088 * 6 5 4 26 26 N 1.31379 * 121.15780 * 0.29822 * 25 6 5 27 27 C 1.32543 * 121.79543 * 359.97438 * 26 25 6 28 28 N 1.36159 * 124.94699 * 179.97438 * 2 1 3 29 29 H 0.97007 * 126.23625 * 0.06509 * 28 2 1 30 30 H 1.09001 * 109.46910 * 270.02129 * 1 2 3 31 31 H 1.08998 * 109.47188 * 30.02761 * 1 2 3 32 32 H 1.08997 * 109.46568 * 150.02219 * 1 2 3 33 33 H 1.07996 * 120.97347 * 359.97438 * 5 4 3 34 34 H 1.08997 * 109.47275 * 264.41923 * 10 9 7 35 35 H 1.08997 * 109.47413 * 144.41654 * 10 9 7 36 36 H 1.09007 * 109.47199 * 24.41837 * 10 9 7 37 37 H 1.09003 * 109.46683 * 24.73179 * 11 9 7 38 38 H 1.08995 * 109.47479 * 144.73394 * 11 9 7 39 39 H 1.09003 * 113.73491 * 252.25184 * 14 12 11 40 40 H 1.08993 * 113.74634 * 23.45281 * 14 12 11 41 41 H 1.09001 * 113.77133 * 90.69219 * 15 14 12 42 42 H 1.09005 * 113.76412 * 221.97902 * 15 14 12 43 43 H 0.96998 * 119.99748 * 179.97438 * 20 19 17 44 44 H 1.07996 * 119.41880 * 180.28100 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2520 1.0662 0.0000 4 6 3.5602 0.7031 0.0006 5 6 4.7591 1.4164 0.0056 6 6 5.9538 0.6928 -0.0004 7 6 7.2526 1.3957 -0.0013 8 8 7.3188 2.5513 0.3706 9 7 8.3647 0.7561 -0.4145 10 6 8.2680 -0.5947 -0.9732 11 6 9.6703 1.4115 -0.3048 12 6 10.0142 2.0886 -1.6330 13 1 10.1481 1.3794 -2.4499 14 6 9.0933 3.2716 -1.9832 15 6 10.3706 4.0023 -2.4356 16 7 11.0958 3.0874 -1.5292 17 6 12.2898 3.1428 -0.8609 18 1 12.6371 2.2853 -0.3038 19 6 13.0536 4.3013 -0.8996 20 7 12.6300 5.3464 -1.5782 21 14 14.6826 4.3767 0.0115 22 1 15.5934 3.3288 -0.5153 23 1 15.2986 5.7135 -0.1859 24 1 14.4505 4.1483 1.4603 25 6 5.9058 -0.7062 0.0005 26 7 4.7589 -1.3470 0.0009 27 6 3.5997 -0.7042 0.0011 28 7 2.2870 -1.1161 0.0005 29 1 1.9741 -2.0343 0.0000 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 4.7633 2.4963 0.0098 34 1 8.4630 -1.3269 -0.1897 35 1 9.0019 -0.7116 -1.7706 36 1 7.2668 -0.7508 -1.3753 37 1 9.6355 2.1605 0.4864 38 1 10.4314 0.6681 -0.0682 39 1 8.3975 3.0606 -2.7952 40 1 8.6107 3.7235 -1.1167 41 1 10.6107 3.8562 -3.4887 42 1 10.4092 5.0484 -2.1316 43 1 13.1635 6.1560 -1.6049 44 1 6.8277 -1.2686 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085634541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = 138.684424 kcal Electronic energy + Delta-G solvation = -27533.100117 eV Core-core repulsion = 23682.720473 eV Total energy + Delta-G solvation = -3850.379645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74701 -40.28145 -38.36885 -37.43279 -35.43639 -33.98436 -32.24257 -31.92223 -31.61371 -29.46102 -27.74088 -27.60411 -26.84383 -24.11108 -23.23690 -23.16794 -22.27837 -21.45699 -19.71032 -18.91283 -18.73222 -18.19919 -16.73365 -16.65326 -16.33308 -16.06200 -15.59676 -15.34311 -14.54976 -14.44027 -14.08799 -13.98589 -13.85565 -13.55231 -13.47685 -13.42581 -13.07740 -12.92792 -12.49883 -12.24193 -12.22116 -11.65022 -11.49249 -11.32585 -11.23614 -10.94973 -10.79176 -10.60215 -10.41224 -9.97378 -9.73082 -9.62075 -9.53249 -9.38394 -9.15774 -8.75842 -8.68424 -8.34227 -6.76986 -5.66326 -2.99921 0.44767 0.59414 2.09072 2.32536 2.85547 3.02210 3.44760 3.48435 3.50139 3.59834 3.64399 3.97918 4.26385 4.44097 4.53424 4.58354 4.62484 4.80897 4.90362 4.92821 5.11019 5.22843 5.29353 5.30864 5.47098 5.51631 5.60436 5.63363 5.75549 5.82146 5.94894 6.02624 6.15461 6.19362 6.46415 6.62151 6.67735 6.73998 6.83072 6.91383 7.32169 7.37126 7.46348 7.50149 7.63686 7.72990 8.09335 8.31770 9.12824 9.80276 10.71449 11.49750 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.002402 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.691121 B =11656.509255 C =12054.867796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.292 3.708 3 N -0.475 5.475 4 C -0.005 4.005 5 C 0.045 3.955 6 C -0.191 4.191 7 C 0.563 3.437 8 O -0.517 6.517 9 N -0.602 5.602 10 C 0.058 3.942 11 C 0.117 3.883 12 C 0.128 3.872 13 H 0.041 0.959 14 C -0.157 4.157 15 C 0.155 3.845 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.146 3.854 26 N -0.487 5.487 27 C 0.253 3.747 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.020 0.980 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 -17.324 1.661 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.196 5.196 4 C -0.125 4.125 5 C 0.017 3.983 6 C -0.200 4.200 7 C 0.350 3.650 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.085 4.085 11 C -0.005 4.005 12 C 0.020 3.980 13 H 0.058 0.942 14 C -0.195 4.195 15 C 0.030 3.970 16 N -0.327 5.327 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.021 4.021 26 N -0.200 5.200 27 C 0.017 3.983 28 N -0.201 5.201 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -23.927 -16.525 1.965 29.145 hybrid contribution 1.219 -0.591 0.256 1.378 sum -22.708 -17.115 2.221 28.523 Atomic orbital electron populations 1.20439 0.83318 1.05132 1.04658 1.23746 0.95860 0.80288 0.97650 1.70475 1.00348 1.27442 1.21310 1.19550 0.92779 0.91607 1.08553 1.20869 0.87348 1.01333 0.88744 1.20731 0.94531 0.95031 1.09672 1.17801 0.82922 0.85998 0.78269 1.90831 1.85390 1.15940 1.47154 1.47651 1.07594 1.16438 1.61869 1.22468 1.03558 0.83474 0.99037 1.21894 0.80842 0.97193 1.00609 1.22514 0.89126 0.92467 0.93880 0.94191 1.23818 0.96768 0.98220 1.00682 1.22310 0.85645 0.97122 0.91951 1.45951 1.18794 1.15630 1.52316 1.18917 0.94424 0.98033 1.23619 0.90538 1.24783 0.99085 0.95985 1.00572 1.69820 1.38446 1.03428 1.44864 0.86235 0.83463 0.76717 0.79532 1.21321 1.21631 1.21092 1.24037 0.95203 0.91168 0.91692 1.66534 0.95718 1.40471 1.17314 1.19141 0.86199 0.91312 1.01644 1.42705 1.03696 1.10578 1.63155 0.73252 0.88938 0.88050 0.89823 0.82663 0.91736 0.90346 0.89897 0.88679 0.91134 0.94136 0.89244 0.96172 0.90532 0.93687 0.78905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.29 2.37 8.08 -154.74 -1.25 1.12 16 3 N -0.48 -5.74 11.29 -8.20 -0.09 -5.83 16 4 C -0.01 -0.07 7.23 -84.69 -0.61 -0.68 16 5 C 0.04 0.61 9.75 -38.58 -0.38 0.23 16 6 C -0.19 -2.51 5.59 -104.85 -0.59 -3.10 16 7 C 0.56 8.85 7.21 -12.40 -0.09 8.76 16 8 O -0.52 -10.19 14.24 5.30 0.08 -10.11 16 9 N -0.60 -8.61 2.81 -182.75 -0.51 -9.12 16 10 C 0.06 0.55 8.69 59.85 0.52 1.07 16 11 C 0.12 2.10 5.39 -4.04 -0.02 2.08 16 12 C 0.13 2.66 4.56 -66.86 -0.31 2.36 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.33 7.23 -25.79 -0.19 -3.52 16 15 C 0.15 3.90 7.64 -2.85 -0.02 3.88 16 16 N -0.60 -15.76 3.58 -169.72 -0.61 -16.36 16 17 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -28.07 11.32 55.49 0.63 -27.44 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.15 1.59 8.74 -17.09 -0.15 1.44 16 26 N -0.49 -5.59 10.36 -11.97 -0.12 -5.71 16 27 C 0.25 2.92 8.45 -155.63 -1.31 1.60 16 28 N -0.59 -4.59 6.20 -9.44 -0.06 -4.65 16 29 H 0.43 1.83 8.96 -40.82 -0.37 1.47 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.16 2.14 7.85 -52.49 -0.41 1.73 16 34 H 0.06 0.45 7.20 -51.93 -0.37 0.08 16 35 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.08 0.70 4.94 -51.93 -0.26 0.44 16 37 H 0.09 2.01 7.35 -51.93 -0.38 1.62 16 38 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.05 6.41 -51.93 -0.33 1.72 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 2.14 6.97 -51.93 -0.36 1.77 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.19 1.59 4.04 -52.49 -0.21 1.37 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -37.29 360.70 -10.17 -47.46 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.62 Total: 0.19 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -4.27 Total: 8.62 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.77 Total: -69.12 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.29 -10.17 -47.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085634541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.143 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds