Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30898 * 119.96079 * 2 1 4 4 C 1.34165 * 121.16510 * 179.76331 * 3 2 1 5 5 C 1.38704 * 132.24435 * 179.63987 * 4 3 2 6 6 C 1.38839 * 107.67178 * 180.42535 * 5 4 3 7 7 N 1.31290 * 108.99236 * 0.22606 * 6 5 4 8 8 N 1.37264 * 120.89798 * 0.51852 * 4 3 2 9 9 C 1.36074 * 119.97747 * 359.48976 * 8 4 3 10 10 C 1.38067 * 118.88915 * 0.24880 * 9 8 4 11 11 C 1.47594 * 120.50358 * 179.97438 * 10 9 8 12 12 O 1.21582 * 120.00430 * 131.15565 * 11 10 9 13 13 N 1.34777 * 119.99975 * 311.15824 * 11 10 9 14 14 C 1.46501 * 119.99969 * 4.70407 * 13 11 10 15 15 C 1.46507 * 120.00200 * 184.69655 * 13 11 10 16 16 C 1.52999 * 109.46671 * 95.67315 * 15 13 11 17 17 H 1.09007 * 112.96582 * 65.58033 * 16 15 13 18 18 C 1.53944 * 113.77461 * 293.90397 * 16 15 13 19 19 C 1.53940 * 86.29231 * 222.09372 * 18 16 15 20 20 N 1.47581 * 113.77162 * 197.25642 * 16 15 13 21 21 C 1.36935 * 134.49091 * 318.94158 * 20 16 15 22 22 H 1.07999 * 120.00160 * 5.95679 * 21 20 16 23 23 C 1.38810 * 119.99953 * 185.95708 * 21 20 16 24 24 N 1.31624 * 120.00118 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00369 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46986 * 89.99938 * 25 23 21 27 27 H 1.48498 * 109.47319 * 210.00334 * 25 23 21 28 28 H 1.48505 * 109.47036 * 330.00584 * 25 23 21 29 29 H 1.08995 * 109.46846 * 273.82244 * 1 2 3 30 30 H 1.09003 * 109.46964 * 33.82578 * 1 2 3 31 31 H 1.08998 * 109.46953 * 153.82172 * 1 2 3 32 32 H 1.07999 * 126.16352 * 0.69103 * 5 4 3 33 33 H 1.08008 * 125.50799 * 180.26527 * 6 5 4 34 34 H 1.08002 * 120.55209 * 180.27282 * 9 8 4 35 35 H 1.08997 * 109.47068 * 84.77554 * 14 13 11 36 36 H 1.08998 * 109.47047 * 204.77955 * 14 13 11 37 37 H 1.08997 * 109.46620 * 324.77614 * 14 13 11 38 38 H 1.08999 * 109.47294 * 215.67358 * 15 13 11 39 39 H 1.09000 * 109.47048 * 335.68180 * 15 13 11 40 40 H 1.08996 * 113.73781 * 336.43822 * 18 16 15 41 41 H 1.08999 * 113.74071 * 107.63737 * 18 16 15 42 42 H 1.08998 * 113.77025 * 137.90719 * 19 18 16 43 43 H 1.09004 * 113.76822 * 269.19612 * 19 18 16 44 44 H 0.96998 * 120.00358 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1341 0.0000 4 6 3.5021 1.1623 0.0047 5 6 4.4128 2.2084 -0.0006 6 6 5.6873 1.6577 -0.0011 7 7 5.5871 0.3486 -0.0013 8 7 4.2316 -0.0005 -0.0009 9 6 3.5945 -1.2028 -0.0010 10 6 2.2140 -1.2262 -0.0005 11 6 1.4865 -2.5104 -0.0012 12 8 0.5842 -2.6984 0.7918 13 7 1.8224 -3.4748 -0.8807 14 6 2.9748 -3.2896 -1.7661 15 6 1.0352 -4.7084 -0.9513 16 6 -0.0071 -4.5852 -2.0645 17 1 0.4372 -4.5156 -3.0574 18 6 -1.0843 -3.5199 -1.7909 19 6 -2.0945 -4.5450 -2.3371 20 7 -1.0988 -5.5737 -1.9693 21 6 -1.1623 -6.9067 -1.6627 22 1 -0.2769 -7.4265 -1.3274 23 6 -2.3646 -7.5900 -1.7828 24 7 -3.4437 -6.9565 -2.1909 25 14 -2.4511 -9.4087 -1.3651 26 1 -2.7882 -9.5710 0.0720 27 1 -3.4972 -10.0580 -2.1954 28 1 -1.1367 -10.0428 -1.6399 29 1 -0.3633 0.0685 1.0253 30 1 -0.3633 0.8537 -0.5721 31 1 -0.3633 -0.9222 -0.4534 32 1 4.1737 3.2616 0.0002 33 1 6.6119 2.2159 -0.0007 34 1 4.1593 -2.1234 -0.0010 35 1 3.8847 -3.5881 -1.2454 36 1 2.8493 -3.9023 -2.6588 37 1 3.0478 -2.2405 -2.0527 38 1 1.6957 -5.5492 -1.1634 39 1 0.5317 -4.8731 0.0013 40 1 -1.2180 -3.2927 -0.7333 41 1 -0.9852 -2.6270 -2.4082 42 1 -3.0185 -4.6007 -1.7616 43 1 -2.2661 -4.4637 -3.4104 44 1 -4.2838 -7.4340 -2.2752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085900334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = 154.744680 kcal Electronic energy + Delta-G solvation = -28209.289225 eV Core-core repulsion = 24359.606005 eV Total energy + Delta-G solvation = -3849.683220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.67708 -40.29146 -38.35848 -37.55018 -35.64249 -34.42951 -32.42477 -32.13386 -30.25815 -28.48114 -28.24281 -27.83884 -26.80134 -24.73953 -23.32029 -23.19424 -22.31564 -21.73137 -19.90755 -19.03287 -18.96512 -17.63469 -16.73234 -16.70635 -16.25614 -16.00123 -15.77089 -15.51098 -14.75306 -14.44958 -14.18487 -14.10466 -13.89113 -13.71570 -13.53050 -13.19266 -12.98976 -12.74922 -12.37896 -12.33546 -12.13648 -11.97601 -11.63515 -11.52296 -11.40772 -11.07792 -10.92976 -10.73198 -10.46932 -10.39318 -9.98025 -9.87208 -9.72745 -9.68232 -9.52906 -8.80937 -8.52091 -8.24831 -6.87017 -5.76721 -3.08839 0.07359 0.36868 1.59628 2.17179 2.53120 2.83446 3.13819 3.39128 3.43325 3.44877 3.45655 3.70337 3.82393 4.21359 4.45959 4.62019 4.78396 4.84213 4.88824 5.07133 5.11441 5.19321 5.37991 5.41935 5.46732 5.47274 5.49918 5.51166 5.60259 5.79768 5.86271 5.91674 6.02998 6.07048 6.13015 6.30386 6.41637 6.56658 6.69564 6.73944 7.02725 7.23855 7.26892 7.34124 7.47546 7.59451 7.97988 8.03241 9.04244 9.71360 10.61267 11.40974 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.002770 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.906007 B =10105.413537 C =10642.812797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.255 3.745 3 N -0.471 5.471 4 C 0.269 3.731 5 C -0.269 4.269 6 C 0.097 3.903 7 N -0.315 5.315 8 N -0.318 5.318 9 C 0.201 3.799 10 C -0.222 4.222 11 C 0.574 3.426 12 O -0.506 6.506 13 N -0.599 5.599 14 C 0.070 3.930 15 C 0.114 3.886 16 C 0.127 3.873 17 H 0.042 0.958 18 C -0.161 4.161 19 C 0.166 3.834 20 N -0.599 5.599 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.200 0.800 34 H 0.186 0.814 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 16.757 2.134 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.184 5.184 4 C 0.043 3.957 5 C -0.300 4.300 6 C -0.082 4.082 7 N -0.138 5.138 8 N -0.088 5.088 9 C 0.064 3.936 10 C -0.233 4.233 11 C 0.358 3.642 12 O -0.381 6.381 13 N -0.332 5.332 14 C -0.074 4.074 15 C -0.009 4.009 16 C 0.019 3.981 17 H 0.059 0.941 18 C -0.199 4.199 19 C 0.041 3.959 20 N -0.326 5.326 21 C -0.352 4.352 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.181 0.819 33 H 0.217 0.783 34 H 0.203 0.797 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.118 16.175 2.576 22.980 hybrid contribution 0.184 -1.097 -0.083 1.115 sum 16.302 15.079 2.493 22.346 Atomic orbital electron populations 1.20970 0.85866 1.04969 1.04979 1.21939 0.98093 0.85492 0.85416 1.68085 1.03747 1.27986 1.18560 1.20872 0.88221 0.87051 0.99606 1.21004 0.89563 0.98809 1.20638 1.23930 0.99040 0.90963 0.94239 1.77920 0.88928 1.15576 1.31415 1.47111 1.07804 1.06016 1.47857 1.22574 0.91754 0.88751 0.90556 1.20727 0.91944 0.97332 1.13253 1.17385 0.83326 0.82009 0.81443 1.90870 1.29949 1.79196 1.38036 1.47762 1.30162 1.18580 1.36684 1.21999 0.87939 1.02392 0.95058 1.21965 0.93445 0.82946 1.02508 1.22508 0.90525 0.90235 0.94813 0.94105 1.23843 0.98760 0.95876 1.01466 1.22126 0.93852 0.83465 0.96496 1.46001 1.01455 1.05351 1.79762 1.18962 0.95563 0.83153 1.37555 0.90374 1.24798 0.95930 0.98018 1.01509 1.69832 0.99650 1.35073 1.51982 0.86173 0.77195 0.84859 0.77827 1.21508 1.21683 1.20731 0.88280 0.89441 0.88789 0.81875 0.78317 0.79672 0.92471 0.89662 0.91769 0.90943 0.88316 0.89718 0.93760 0.91580 0.95545 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.38 36.01 0.34 -0.87 16 2 C 0.26 3.10 6.86 -81.73 -0.56 2.54 16 3 N -0.47 -6.00 10.37 -8.17 -0.08 -6.09 16 4 C 0.27 3.30 7.91 -155.32 -1.23 2.07 16 5 C -0.27 -2.65 10.91 -39.19 -0.43 -3.08 16 6 C 0.10 0.83 11.94 -17.56 -0.21 0.62 16 7 N -0.32 -3.50 12.65 30.49 0.39 -3.11 16 8 N -0.32 -3.72 3.88 -11.67 -0.05 -3.76 16 9 C 0.20 2.09 9.08 -15.73 -0.14 1.95 16 10 C -0.22 -2.62 4.91 -104.88 -0.52 -3.13 16 11 C 0.57 7.84 5.92 -12.44 -0.07 7.77 16 12 O -0.51 -8.60 13.94 5.29 0.07 -8.53 16 13 N -0.60 -7.66 2.80 -182.79 -0.51 -8.17 16 14 C 0.07 0.62 9.09 59.85 0.54 1.17 16 15 C 0.11 1.86 5.40 -4.04 -0.02 1.84 16 16 C 0.13 2.44 4.57 -66.86 -0.31 2.13 16 17 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.16 -3.04 7.33 -25.80 -0.19 -3.23 16 19 C 0.17 3.90 7.38 -2.85 -0.02 3.88 16 20 N -0.60 -14.87 3.58 -169.72 -0.61 -15.47 16 21 C -0.22 -6.12 10.51 -15.06 -0.16 -6.28 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.92 -27.20 11.56 55.49 0.64 -26.56 16 25 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.13 6.56 -51.93 -0.34 0.79 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.19 1.44 6.32 -52.49 -0.33 1.11 16 35 H 0.06 0.39 7.09 -51.93 -0.37 0.02 16 36 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.06 0.53 6.27 -51.93 -0.33 0.21 16 38 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 39 H 0.10 1.89 7.21 -51.93 -0.37 1.52 16 40 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.72 7.46 -51.93 -0.39 1.33 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -34.05 363.26 -8.59 -42.64 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.83 Total: -0.46 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.07 Total: 7.11 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.22 Total: -63.16 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.05 -8.59 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085900334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.384 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds