Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35338 * 125.69438 * 2 1 4 4 N 1.36150 * 107.14547 * 180.02562 * 3 2 1 5 5 C 1.36226 * 133.93419 * 180.02562 * 4 3 2 6 6 C 1.35475 * 120.52658 * 179.97438 * 5 4 3 7 7 N 1.32693 * 122.11739 * 359.97438 * 6 5 4 8 8 C 1.32299 * 121.18539 * 0.02562 * 7 6 5 9 9 C 1.47802 * 120.58804 * 179.97438 * 8 7 6 10 10 O 1.21563 * 119.99603 * 175.00414 * 9 8 7 11 11 N 1.34766 * 120.00156 * 355.00156 * 9 8 7 12 12 C 1.46501 * 120.00065 * 4.98563 * 11 9 8 13 13 C 1.46507 * 120.00129 * 184.99019 * 11 9 8 14 14 C 1.53008 * 109.46801 * 276.08905 * 13 11 9 15 15 H 1.09005 * 112.95744 * 50.78891 * 14 13 11 16 16 C 1.53943 * 113.76723 * 182.46470 * 14 13 11 17 17 C 1.53950 * 86.28861 * 137.91065 * 16 14 13 18 18 N 1.47574 * 113.77031 * 279.11062 * 14 13 11 19 19 C 1.36935 * 134.49445 * 41.06756 * 18 14 13 20 20 H 1.07999 * 119.99910 * 8.60384 * 19 18 14 21 21 C 1.38814 * 120.00130 * 188.60934 * 19 18 14 22 22 N 1.31624 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00099 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47136 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46827 * 120.00159 * 23 21 19 26 26 H 1.48504 * 109.47035 * 239.99949 * 23 21 19 27 27 C 1.37567 * 106.99632 * 0.24457 * 4 3 2 28 28 N 1.31862 * 108.10140 * 359.59385 * 27 4 3 29 29 H 1.09002 * 109.47470 * 89.99773 * 1 2 3 30 30 H 1.09003 * 109.46909 * 209.99725 * 1 2 3 31 31 H 1.09000 * 109.47040 * 329.99869 * 1 2 3 32 32 H 1.08003 * 126.42685 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.73355 * 359.94419 * 5 4 3 34 34 H 1.08000 * 118.94256 * 180.02562 * 6 5 4 35 35 H 1.08991 * 109.47213 * 59.30657 * 12 11 9 36 36 H 1.08996 * 109.47118 * 299.30152 * 12 11 9 37 37 H 1.09004 * 109.46955 * 179.30779 * 12 11 9 38 38 H 1.09000 * 109.47078 * 36.08674 * 13 11 9 39 39 H 1.08995 * 109.47153 * 156.09100 * 13 11 9 40 40 H 1.09004 * 113.73731 * 252.25209 * 16 14 13 41 41 H 1.08992 * 113.74490 * 23.45680 * 16 14 13 42 42 H 1.09003 * 113.76875 * 90.69448 * 17 16 14 43 43 H 1.08993 * 113.76973 * 221.97901 * 17 16 14 44 44 H 0.96993 * 119.99857 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5875 0.6660 -0.0006 5 6 4.7956 1.2954 -0.0004 6 6 5.9451 0.5784 -0.0006 7 7 5.9488 -0.7486 -0.0005 8 6 4.8189 -1.4368 -0.0007 9 6 4.8385 -2.9147 -0.0011 10 8 3.7978 -3.5363 0.0904 11 7 6.0099 -3.5731 -0.1030 12 6 7.2713 -2.8280 -0.1034 13 6 6.0220 -5.0339 -0.2136 14 6 5.9372 -5.6518 1.1836 15 1 5.1194 -5.2458 1.7791 16 6 6.0032 -7.1898 1.1869 17 6 6.9339 -7.0475 2.4049 18 7 7.2291 -5.6916 1.8958 19 6 8.2784 -4.8220 2.0296 20 1 8.1928 -3.8114 1.6586 21 6 9.4521 -5.2395 2.6421 22 7 9.5562 -6.4712 3.0946 23 14 10.8838 -4.0535 2.8240 24 1 10.5155 -2.7396 2.2382 25 1 11.2036 -3.8809 4.2638 26 1 12.0700 -4.5971 2.1151 27 6 3.5502 -0.7091 -0.0065 28 7 2.2862 -1.0847 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9651 2.1270 0.0004 33 1 4.8374 2.3746 -0.0006 34 1 6.8887 1.1036 -0.0001 35 1 7.3578 -2.2596 0.8226 36 1 7.2895 -2.1447 -0.9523 37 1 8.1053 -3.5256 -0.1807 38 1 5.1685 -5.3604 -0.8077 39 1 6.9450 -5.3540 -0.6970 40 1 5.0514 -7.6693 1.4155 41 1 6.4902 -7.6101 0.3070 42 1 6.4101 -7.0516 3.3608 43 1 7.7890 -7.7231 2.3857 44 1 10.3761 -6.7628 3.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085914385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = 155.420193 kcal Electronic energy + Delta-G solvation = -28405.562459 eV Core-core repulsion = 24555.908532 eV Total energy + Delta-G solvation = -3849.653928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.20211 -39.77138 -38.50294 -37.57210 -34.99138 -34.48710 -32.17209 -31.99232 -30.17920 -28.48331 -28.19143 -27.62000 -26.18654 -24.60321 -23.50181 -23.22001 -22.36478 -21.04359 -19.84165 -18.97501 -18.52332 -17.69280 -16.80238 -16.47538 -16.02257 -15.84410 -15.63928 -15.02499 -14.77179 -14.62745 -14.15268 -13.86441 -13.73678 -13.45516 -13.35687 -13.03463 -12.77457 -12.56519 -12.47581 -12.42136 -12.00694 -11.50487 -11.40739 -11.26396 -11.01767 -10.87186 -10.64126 -10.45552 -10.26702 -10.14451 -9.92432 -9.59521 -9.40480 -9.28204 -8.98232 -8.67127 -8.42228 -8.07120 -6.73193 -5.67154 -2.99947 -0.08515 0.99278 2.08777 2.54437 2.76768 3.09029 3.40259 3.44345 3.48254 3.64828 3.74978 3.89200 4.02467 4.32462 4.49883 4.78199 4.83063 4.89220 4.96642 5.25508 5.42355 5.44521 5.46471 5.50672 5.73334 5.76053 5.81731 5.87827 5.95694 6.05973 6.18441 6.19969 6.31709 6.36285 6.52106 6.56664 6.58393 6.73227 6.83882 7.05610 7.29205 7.39132 7.56668 7.65179 7.71230 7.78519 8.09885 8.45064 9.13153 9.80810 10.74344 11.48906 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003684 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.101428 B = 7599.259047 C = 8900.242170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.056 3.944 3 C -0.086 4.086 4 N -0.355 5.355 5 C 0.025 3.975 6 C 0.029 3.971 7 N -0.417 5.417 8 C 0.188 3.812 9 C 0.562 3.438 10 O -0.506 6.506 11 N -0.575 5.575 12 C 0.094 3.906 13 C 0.120 3.880 14 C 0.128 3.872 15 H 0.050 0.950 16 C -0.156 4.156 17 C 0.150 3.850 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.088 0.912 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.197 3.803 28 N -0.431 5.431 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.188 0.812 33 H 0.173 0.827 34 H 0.184 0.816 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.080 0.920 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 16.746 -9.196 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C -0.220 4.220 4 N -0.029 5.029 5 C -0.100 4.100 6 C -0.111 4.111 7 N -0.133 5.133 8 C 0.022 3.978 9 C 0.345 3.655 10 O -0.379 6.379 11 N -0.306 5.306 12 C -0.048 4.048 13 C -0.003 4.003 14 C 0.020 3.980 15 H 0.067 0.933 16 C -0.195 4.195 17 C 0.024 3.976 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.106 0.894 21 C -0.207 4.207 22 N -0.566 5.566 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.218 1.218 27 C -0.051 4.051 28 N -0.152 5.152 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.205 0.795 33 H 0.191 0.809 34 H 0.201 0.799 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.099 0.901 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.254 15.484 -9.046 21.171 hybrid contribution 0.560 2.384 0.479 2.496 sum -10.694 17.868 -8.566 22.517 Atomic orbital electron populations 1.20170 0.86343 1.03494 1.02965 1.21297 0.97362 0.87680 1.01446 1.22458 0.80361 1.01345 1.17793 1.42816 1.06282 1.09034 1.44789 1.22713 0.83192 1.00632 1.03490 1.22259 0.97645 0.89800 1.01432 1.68788 1.26707 1.08137 1.09678 1.22394 0.83722 0.95333 0.96324 1.17237 0.84578 0.84060 0.79582 1.90868 1.31692 1.66668 1.48715 1.47654 1.05900 1.07824 1.69231 1.22182 0.84823 0.95990 1.01843 1.22054 1.02401 0.76985 0.98824 1.22634 0.90127 0.93498 0.91720 0.93282 1.23729 0.99272 0.95485 1.01045 1.22353 0.95206 0.88158 0.91839 1.46144 1.13930 1.16808 1.55985 1.19378 0.89514 0.92955 1.32930 0.89422 1.24804 0.97677 0.96461 1.01744 1.69828 1.26451 1.15937 1.44426 0.86193 0.83017 0.80095 0.77415 1.20329 1.22043 1.21808 1.22490 0.94644 0.80185 1.07743 1.70590 0.97772 1.28462 1.18359 0.90534 0.90192 0.90731 0.79485 0.80948 0.79876 0.91272 0.92332 0.89618 0.90687 0.89382 0.93028 0.90696 0.96246 0.90141 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.01 0.38 -0.23 16 2 C 0.06 0.70 7.07 -82.87 -0.59 0.11 16 3 C -0.09 -0.88 11.70 -16.67 -0.19 -1.07 16 4 N -0.36 -4.30 2.95 -61.13 -0.18 -4.48 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.04 16 6 C 0.03 0.29 11.01 -18.17 -0.20 0.09 16 7 N -0.42 -5.89 6.17 -8.68 -0.05 -5.95 16 8 C 0.19 3.15 6.88 -80.53 -0.55 2.60 16 9 C 0.56 10.84 7.61 -12.35 -0.09 10.75 16 10 O -0.51 -11.05 15.98 5.31 0.08 -10.96 16 11 N -0.58 -10.68 2.89 -182.71 -0.53 -11.20 16 12 C 0.09 1.60 7.13 59.85 0.43 2.02 16 13 C 0.12 2.27 5.17 -4.03 -0.02 2.25 16 14 C 0.13 2.77 4.49 -66.86 -0.30 2.47 16 15 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.16 -3.11 7.86 -25.79 -0.20 -3.31 16 17 C 0.15 3.63 7.75 -2.84 -0.02 3.60 16 18 N -0.60 -15.31 3.58 -169.72 -0.61 -15.92 16 19 C -0.22 -5.91 9.77 -15.06 -0.15 -6.05 16 20 H 0.09 2.21 4.22 -52.49 -0.22 1.99 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.92 -27.13 11.28 55.49 0.63 -26.51 16 23 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.20 3.20 7.66 -153.97 -1.18 2.02 16 28 N -0.43 -7.35 10.75 -7.53 -0.08 -7.43 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.19 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.07 1.25 6.58 -51.93 -0.34 0.91 16 36 H 0.06 0.86 6.96 -51.93 -0.36 0.50 16 37 H 0.09 1.55 6.43 -51.93 -0.33 1.22 16 38 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 39 H 0.09 1.63 7.80 -51.93 -0.41 1.22 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.41 8.10 -51.93 -0.42 0.98 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 2.13 6.83 -51.93 -0.35 1.77 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -36.03 361.43 -9.07 -45.10 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.78 Total: 0.38 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -2.98 Total: 14.88 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.82 Total: -71.49 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.03 -9.07 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085914385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.519 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds