Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39970 * 119.94678 * 2 1 4 4 C 1.35751 * 119.35661 * 180.02562 * 3 2 1 5 5 N 1.36311 * 119.15615 * 359.96564 * 4 3 2 6 6 N 1.39908 * 132.15989 * 180.02562 * 5 4 3 7 7 C 1.30701 * 109.51666 * 179.97438 * 6 5 4 8 8 C 1.40645 * 108.72983 * 359.97438 * 7 6 5 9 9 C 1.46582 * 126.53913 * 180.02562 * 8 7 6 10 10 O 1.21710 * 119.99663 * 144.02893 * 9 8 7 11 11 N 1.34776 * 119.99940 * 324.03275 * 9 8 7 12 12 C 1.46505 * 119.99923 * 4.20735 * 11 9 8 13 13 C 1.46502 * 119.99768 * 184.21087 * 11 9 8 14 14 C 1.52997 * 109.47304 * 96.04844 * 13 11 9 15 15 H 1.09001 * 112.96440 * 67.30556 * 14 13 11 16 16 C 1.53953 * 113.76766 * 295.63174 * 14 13 11 17 17 C 1.53948 * 86.28875 * 222.09019 * 16 14 13 18 18 N 1.47578 * 113.77137 * 199.13708 * 14 13 11 19 19 C 1.36936 * 134.48751 * 318.93650 * 18 14 13 20 20 H 1.07996 * 120.00303 * 5.34667 * 19 18 14 21 21 C 1.38815 * 119.99830 * 185.34260 * 19 18 14 22 22 N 1.31626 * 119.99741 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00304 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47322 * 59.99908 * 23 21 19 25 25 H 1.48495 * 109.47633 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46824 * 300.00411 * 23 21 19 27 27 C 1.36601 * 119.72986 * 0.02562 * 5 4 3 28 28 N 1.31495 * 119.94832 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47514 * 270.03517 * 1 2 3 30 30 H 1.08995 * 109.47440 * 30.03616 * 1 2 3 31 31 H 1.09002 * 109.47389 * 150.03705 * 1 2 3 32 32 H 1.08003 * 120.31859 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.42005 * 180.23802 * 4 3 2 34 34 H 1.07996 * 125.63310 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46573 * 85.11561 * 12 11 9 36 36 H 1.09000 * 109.46546 * 205.11489 * 12 11 9 37 37 H 1.08995 * 109.46934 * 325.11815 * 12 11 9 38 38 H 1.09003 * 109.46750 * 216.04337 * 13 11 9 39 39 H 1.08996 * 109.47344 * 336.04479 * 13 11 9 40 40 H 1.09000 * 113.73898 * 336.43638 * 16 14 13 41 41 H 1.08999 * 113.74397 * 107.63718 * 16 14 13 42 42 H 1.08997 * 113.76991 * 137.90039 * 17 16 14 43 43 H 1.09000 * 113.76794 * 269.19370 * 17 16 14 44 44 H 0.96998 * 119.99621 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5631 1.1988 -0.0005 5 7 4.2149 0.0017 -0.0003 6 7 5.5748 -0.3272 -0.0003 7 6 5.7097 -1.6272 0.0005 8 6 4.4314 -2.2139 0.0016 9 6 4.1295 -3.6482 0.0032 10 8 3.1696 -4.0673 0.6231 11 7 4.9149 -4.5030 -0.6817 12 6 6.1219 -4.0122 -1.3515 13 6 4.5615 -5.9227 -0.7565 14 6 3.7997 -6.1910 -2.0560 15 1 4.4185 -6.0678 -2.9448 16 6 2.4425 -5.4692 -2.1399 17 6 1.8940 -6.7817 -2.7286 18 7 3.0194 -7.4435 -2.0404 19 6 3.2479 -8.7107 -1.5745 20 1 4.1468 -8.9270 -1.0163 21 6 2.3241 -9.7174 -1.8196 22 7 1.2287 -9.4539 -2.5003 23 14 2.6353 -11.4459 -1.1835 24 1 2.7485 -11.4157 0.2968 25 1 1.5076 -12.3285 -1.5762 26 1 3.8978 -11.9678 -1.7659 27 6 3.4970 -1.1605 -0.0001 28 7 2.1634 -1.1394 0.0005 29 1 -0.3634 0.0006 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8903 -0.5133 32 1 1.6700 2.1507 -0.0004 33 1 4.1195 2.1245 0.0033 34 1 6.6476 -2.1624 0.0011 35 1 6.9480 -3.9896 -0.6408 36 1 6.3729 -4.6752 -2.1795 37 1 5.9427 -3.0068 -1.7324 38 1 5.4700 -6.5248 -0.7370 39 1 3.9328 -6.1860 0.0941 40 1 2.0204 -5.2140 -1.1679 41 1 2.4321 -4.6341 -2.8402 42 1 0.9152 -7.0624 -2.3397 43 1 1.9504 -6.8329 -3.8159 44 1 0.5834 -10.1575 -2.6720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085930963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = 156.517289 kcal Electronic energy + Delta-G solvation = -28095.040947 eV Core-core repulsion = 24245.434593 eV Total energy + Delta-G solvation = -3849.606354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69698 -39.55931 -38.47571 -37.40697 -35.00242 -34.42745 -32.47776 -32.02976 -30.27362 -28.70717 -28.08966 -27.67442 -26.29066 -24.53049 -23.27510 -23.06391 -22.60117 -21.67536 -19.57400 -18.82580 -18.21004 -17.65273 -16.73996 -16.56621 -16.28651 -15.75799 -15.42563 -15.18713 -14.64436 -14.42694 -14.22021 -14.10040 -13.87017 -13.46682 -13.32176 -13.12498 -12.69363 -12.60958 -12.39650 -12.18392 -12.10874 -11.77179 -11.67567 -11.46032 -11.22981 -10.89940 -10.70433 -10.57850 -10.32224 -10.04932 -9.78835 -9.73923 -9.59183 -9.47834 -9.28626 -8.65575 -8.22977 -8.07280 -6.71298 -5.63155 -2.94291 0.13578 0.50196 1.66529 2.03648 2.91213 3.19405 3.45320 3.48333 3.51969 3.53314 3.62667 3.80778 3.91721 4.41785 4.58484 4.64500 4.80198 4.88648 4.99758 5.16655 5.21848 5.25027 5.28979 5.39117 5.43629 5.46215 5.59533 5.74222 5.75812 5.81348 5.94558 6.05079 6.11411 6.16329 6.29329 6.55774 6.72603 6.91704 6.93113 6.98043 7.04671 7.41038 7.42831 7.64430 7.75172 7.80797 8.12980 8.66156 9.18326 9.84917 10.77300 11.54620 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.003067 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.329954 B = 9126.616151 C =10106.972771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.209 3.791 3 C -0.220 4.220 4 C 0.165 3.835 5 N -0.312 5.312 6 N -0.316 5.316 7 C 0.123 3.877 8 C -0.277 4.277 9 C 0.596 3.404 10 O -0.519 6.519 11 N -0.607 5.607 12 C 0.076 3.924 13 C 0.118 3.882 14 C 0.128 3.872 15 H 0.040 0.960 16 C -0.156 4.156 17 C 0.165 3.835 18 N -0.599 5.599 19 C -0.220 4.220 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.319 3.681 28 N -0.445 5.445 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 26.837 3.445 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.046 3.954 3 C -0.244 4.244 4 C 0.030 3.970 5 N -0.082 5.082 6 N -0.138 5.138 7 C -0.058 4.058 8 C -0.294 4.294 9 C 0.383 3.617 10 O -0.394 6.394 11 N -0.341 5.341 12 C -0.068 4.068 13 C -0.005 4.005 14 C 0.020 3.980 15 H 0.057 0.943 16 C -0.194 4.194 17 C 0.040 3.960 18 N -0.326 5.326 19 C -0.348 4.348 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.088 3.912 28 N -0.157 5.157 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.200 0.800 34 H 0.223 0.777 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.515 26.386 3.826 27.227 hybrid contribution 0.462 -0.914 0.034 1.024 sum 5.976 25.473 3.859 26.447 Atomic orbital electron populations 1.20873 0.86675 1.04832 1.04349 1.22101 0.98294 0.87316 0.87684 1.21762 0.92445 1.01368 1.08826 1.22077 0.92673 0.88451 0.93814 1.46996 1.07699 1.06370 1.47094 1.77557 0.88816 1.15861 1.31591 1.24348 0.98451 0.90459 0.92512 1.19464 0.90573 0.93553 1.25797 1.16738 0.82376 0.83509 0.79064 1.90841 1.28165 1.77901 1.42526 1.47561 1.25128 1.09177 1.52233 1.21949 0.86838 1.00534 0.97460 1.21789 0.99868 0.77929 1.00873 1.22516 0.93331 0.87940 0.94220 0.94314 1.23785 0.97566 0.96747 1.01323 1.22094 0.93814 0.85986 0.94097 1.45944 1.14268 1.05457 1.66911 1.18951 1.04756 0.83777 1.27340 0.90448 1.24783 0.97349 0.97807 1.00533 1.69839 1.10696 1.32057 1.44200 0.86246 0.76919 0.84405 0.78477 1.21103 1.21676 1.21323 1.20305 0.87865 0.86128 0.96941 1.68149 1.03716 1.28490 1.15384 0.88933 0.89568 0.89029 0.81270 0.80020 0.77704 0.92897 0.90632 0.91493 0.91553 0.88687 0.89641 0.94214 0.91660 0.95833 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.19 36.00 0.37 -0.33 16 2 C 0.21 1.99 6.83 -82.09 -0.56 1.43 16 3 C -0.22 -1.33 9.72 -39.82 -0.39 -1.71 16 4 C 0.17 1.20 11.29 -16.45 -0.19 1.02 16 5 N -0.31 -3.68 3.86 -11.97 -0.05 -3.73 16 6 N -0.32 -3.78 12.58 30.76 0.39 -3.39 16 7 C 0.12 1.43 9.64 -17.13 -0.17 1.26 16 8 C -0.28 -4.23 5.44 -104.65 -0.57 -4.80 16 9 C 0.60 10.80 7.10 -12.90 -0.09 10.71 16 10 O -0.52 -11.64 15.29 5.18 0.08 -11.56 16 11 N -0.61 -9.84 2.78 -183.16 -0.51 -10.35 16 12 C 0.08 0.84 9.02 59.85 0.54 1.38 16 13 C 0.12 2.30 5.42 -4.04 -0.02 2.28 16 14 C 0.13 2.82 4.58 -66.86 -0.31 2.51 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.16 -3.49 7.29 -25.80 -0.19 -3.68 16 17 C 0.17 4.30 7.39 -2.97 -0.02 4.28 16 18 N -0.60 -16.27 3.57 -170.73 -0.61 -16.88 16 19 C -0.22 -6.41 10.51 -15.06 -0.16 -6.57 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -28.62 11.53 55.49 0.64 -27.98 16 23 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 C 0.32 4.74 7.86 -155.83 -1.22 3.52 16 28 N -0.45 -6.52 10.39 -8.25 -0.09 -6.61 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 33 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.21 1.63 6.15 -52.49 -0.32 1.31 16 35 H 0.05 0.44 7.30 -51.93 -0.38 0.06 16 36 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 37 H 0.07 0.68 5.82 -51.93 -0.30 0.38 16 38 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 39 H 0.09 2.16 7.20 -51.93 -0.37 1.79 16 40 H 0.09 2.08 6.81 -51.93 -0.35 1.72 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.86 7.41 -51.93 -0.38 1.47 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -39.71 366.55 -8.59 -48.30 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.88 Total: -2.24 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -3.07 Total: 10.95 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -0.22 Total: -68.94 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.71 -8.59 -48.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085930963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.820 kcal (2) G-P(sol) polarization free energy of solvation -39.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds