Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30694 * 125.64086 * 2 1 4 4 N 1.39909 * 109.52269 * 179.74948 * 3 2 1 5 5 C 1.36320 * 132.15908 * 179.54454 * 4 3 2 6 6 C 1.35752 * 119.15530 * 180.40321 * 5 4 3 7 7 C 1.39963 * 119.35452 * 0.27475 * 6 5 4 8 8 N 1.31501 * 120.11027 * 0.02562 * 7 6 5 9 9 C 1.33381 * 120.85140 * 359.97438 * 8 7 6 10 10 C 1.40651 * 125.63448 * 179.97438 * 2 1 3 11 11 C 1.46584 * 126.54002 * 359.96773 * 10 2 1 12 12 O 1.21721 * 119.99706 * 270.04390 * 11 10 2 13 13 N 1.34774 * 120.00212 * 90.03555 * 11 10 2 14 14 C 1.46496 * 119.99748 * 355.28271 * 13 11 10 15 15 C 1.46497 * 119.99698 * 175.27327 * 13 11 10 16 16 C 1.52998 * 109.47281 * 84.45055 * 15 13 11 17 17 H 1.09005 * 112.96017 * 294.05832 * 16 15 13 18 18 C 1.53942 * 113.77004 * 65.72731 * 16 15 13 19 19 C 1.53947 * 86.28728 * 137.91579 * 18 16 15 20 20 N 1.47579 * 113.77495 * 162.37636 * 16 15 13 21 21 C 1.36939 * 134.49148 * 41.06505 * 20 16 15 22 22 H 1.08006 * 119.99862 * 353.53448 * 21 20 16 23 23 C 1.38806 * 120.00009 * 173.52846 * 21 20 16 24 24 N 1.31614 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99865 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46967 * 90.00619 * 25 23 21 27 27 H 1.48502 * 109.46862 * 210.00232 * 25 23 21 28 28 H 1.48494 * 109.47461 * 330.00604 * 25 23 21 29 29 H 1.08994 * 109.47274 * 270.00180 * 1 2 3 30 30 H 1.09007 * 109.47103 * 30.00024 * 1 2 3 31 31 H 1.09002 * 109.47478 * 149.99593 * 1 2 3 32 32 H 1.08003 * 120.42014 * 0.68001 * 5 4 3 33 33 H 1.08001 * 120.32207 * 180.30342 * 6 5 4 34 34 H 1.08000 * 119.94815 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47843 * 89.99699 * 14 13 11 36 36 H 1.09004 * 109.46677 * 209.99686 * 14 13 11 37 37 H 1.08997 * 109.47216 * 329.98960 * 14 13 11 38 38 H 1.09001 * 109.47245 * 204.44558 * 15 13 11 39 39 H 1.08994 * 109.47566 * 324.44503 * 15 13 11 40 40 H 1.09000 * 113.74317 * 252.25550 * 18 16 15 41 41 H 1.08996 * 113.74422 * 23.46720 * 18 16 15 42 42 H 1.08998 * 113.77450 * 90.69722 * 19 18 16 43 43 H 1.09008 * 113.76886 * 221.98312 * 19 18 16 44 44 H 0.97004 * 119.99958 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2685 1.0621 0.0000 4 7 3.6126 0.6737 0.0058 5 6 4.7721 1.3905 0.0000 6 6 5.9580 0.7298 0.0000 7 6 5.9637 -0.6699 0.0000 8 7 4.8288 -1.3341 -0.0005 9 6 3.6600 -0.6914 -0.0004 10 6 2.3264 -1.1431 0.0005 11 6 1.8777 -2.5386 0.0018 12 8 1.6911 -3.1169 1.0565 13 7 1.6715 -3.1813 -1.1648 14 6 1.7954 -2.4568 -2.4320 15 6 1.3237 -4.6044 -1.1655 16 6 -0.1853 -4.7607 -0.9677 17 1 -0.5223 -4.4277 0.0140 18 6 -1.0246 -4.2059 -2.1328 19 6 -1.8907 -5.4693 -1.9789 20 7 -0.7019 -6.0877 -1.3553 21 6 -0.2571 -7.3735 -1.1998 22 1 0.7222 -7.5597 -0.7842 23 6 -1.0651 -8.4376 -1.5761 24 7 -2.2584 -8.2108 -2.0829 25 14 -0.4581 -10.1916 -1.3646 26 1 -0.8493 -10.6923 -0.0223 27 1 -1.0637 -11.0544 -2.4105 28 1 1.0210 -10.2225 -1.4926 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 4.7476 2.4702 0.0001 33 1 6.8881 1.2788 0.0005 34 1 6.9016 -1.2052 -0.0004 35 1 2.8236 -2.5209 -2.7882 36 1 1.1268 -2.8994 -3.1704 37 1 1.5279 -1.4111 -2.2803 38 1 1.6132 -5.0487 -2.1178 39 1 1.8505 -5.1076 -0.3547 40 1 -1.5505 -3.2816 -1.8937 41 1 -0.4839 -4.1550 -3.0779 42 1 -2.7298 -5.3461 -1.2942 43 1 -2.1788 -5.9227 -2.9274 44 1 -2.8232 -8.9544 -2.3455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085978978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = 152.603762 kcal Electronic energy + Delta-G solvation = -28172.147880 eV Core-core repulsion = 24322.371823 eV Total energy + Delta-G solvation = -3849.776057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72959 -39.57448 -38.42466 -37.54825 -34.94349 -34.49970 -32.45086 -32.06299 -30.16258 -28.76243 -28.17512 -27.73995 -26.16521 -24.89252 -23.98957 -23.23889 -22.25938 -21.13366 -19.47426 -18.96973 -18.22981 -17.69230 -17.06874 -16.55947 -16.45996 -15.86274 -15.71934 -15.16208 -14.78656 -14.48940 -14.00429 -13.79057 -13.61174 -13.55978 -13.38831 -13.11781 -12.68906 -12.59634 -12.57777 -12.44971 -12.22525 -11.97414 -11.52741 -11.40375 -11.29349 -10.97284 -10.75248 -10.64060 -10.37719 -10.18941 -9.79745 -9.75640 -9.73291 -9.59826 -9.36273 -8.70089 -8.22565 -8.14429 -6.75506 -5.67772 -2.98574 0.10242 0.46532 1.62172 2.12152 2.79000 2.99438 3.35374 3.46153 3.46372 3.51660 3.52867 3.76819 3.95739 4.43210 4.55910 4.56574 4.77223 4.85161 5.05445 5.17946 5.24164 5.35238 5.36288 5.41026 5.49883 5.57947 5.61541 5.64996 5.67881 5.81161 5.94079 5.99904 6.09917 6.20464 6.29117 6.39815 6.53953 6.76516 6.81519 6.96914 7.07706 7.26089 7.35144 7.52714 7.67262 7.72845 8.08204 8.51181 9.15202 9.81311 10.72531 11.50393 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002952 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.484548 B = 9481.261568 C =10285.440017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.157 3.843 3 N -0.312 5.312 4 N -0.308 5.308 5 C 0.168 3.832 6 C -0.228 4.228 7 C 0.183 3.817 8 N -0.457 5.457 9 C 0.293 3.707 10 C -0.263 4.263 11 C 0.603 3.397 12 O -0.528 6.528 13 N -0.596 5.596 14 C 0.086 3.914 15 C 0.121 3.879 16 C 0.130 3.870 17 H 0.049 0.951 18 C -0.159 4.159 19 C 0.166 3.834 20 N -0.603 5.603 21 C -0.219 4.219 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.064 0.936 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.270 24.210 -0.426 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.003 4.003 3 N -0.136 5.136 4 N -0.076 5.076 5 C 0.032 3.968 6 C -0.252 4.252 7 C 0.000 4.000 8 N -0.168 5.168 9 C 0.063 3.937 10 C -0.280 4.280 11 C 0.388 3.612 12 O -0.403 6.403 13 N -0.329 5.329 14 C -0.057 4.057 15 C -0.002 4.002 16 C 0.022 3.978 17 H 0.067 0.933 18 C -0.198 4.198 19 C 0.041 3.959 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.799 23.857 0.098 28.075 hybrid contribution 0.524 -0.872 0.230 1.043 sum 15.323 22.985 0.329 27.626 Atomic orbital electron populations 1.20438 0.84651 1.04500 1.04527 1.22442 0.97377 0.88248 0.92280 1.77525 0.82331 1.21212 1.32531 1.46846 1.06663 1.07089 1.47010 1.22106 0.81709 0.99539 0.93469 1.21862 0.98134 0.96342 1.08897 1.23513 0.96545 0.91572 0.88372 1.68179 0.96183 1.37386 1.15069 1.20268 0.93680 0.80517 0.99208 1.19354 0.88768 0.95279 1.24553 1.16804 0.76858 0.83867 0.83670 1.90831 1.51097 1.67379 1.31033 1.47716 1.68522 1.11122 1.05552 1.21710 1.01285 0.96702 0.86021 1.21766 0.97295 0.78242 1.02891 1.22523 0.91785 0.87463 0.95986 0.93321 1.23779 0.99779 0.97849 0.98366 1.22114 0.89565 0.87051 0.97162 1.46120 1.21928 0.99559 1.65311 1.19039 0.99014 0.80609 1.35998 0.90323 1.24786 0.96083 0.97647 1.01956 1.69833 1.09362 1.29924 1.47827 0.86174 0.77875 0.84753 0.77330 1.21675 1.21776 1.20614 0.89001 0.89697 0.89201 0.80141 0.81288 0.80043 0.93410 0.90354 0.91951 0.89890 0.90793 0.93346 0.91065 0.95503 0.91741 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.26 36.00 0.37 -0.49 16 2 C 0.16 2.06 6.76 -82.17 -0.56 1.51 16 3 N -0.31 -3.93 12.58 33.80 0.43 -3.50 16 4 N -0.31 -3.52 3.86 -11.97 -0.05 -3.56 16 5 C 0.17 1.10 11.29 -16.45 -0.19 0.91 16 6 C -0.23 -1.03 10.05 -39.83 -0.40 -1.43 16 7 C 0.18 1.31 11.28 -17.05 -0.19 1.12 16 8 N -0.46 -5.79 10.47 -12.00 -0.13 -5.91 16 9 C 0.29 4.07 7.90 -155.83 -1.23 2.84 16 10 C -0.26 -4.05 4.25 -104.65 -0.44 -4.49 16 11 C 0.60 10.89 7.09 -12.90 -0.09 10.80 16 12 O -0.53 -11.73 16.83 5.17 0.09 -11.64 16 13 N -0.60 -9.89 2.78 -183.17 -0.51 -10.40 16 14 C 0.09 1.10 9.97 59.84 0.60 1.70 16 15 C 0.12 2.36 5.22 -4.04 -0.02 2.34 16 16 C 0.13 2.83 4.53 -66.87 -0.30 2.53 16 17 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.16 -3.05 7.26 -25.79 -0.19 -3.23 16 19 C 0.17 4.03 7.37 -2.85 -0.02 4.01 16 20 N -0.60 -15.89 3.58 -169.72 -0.61 -16.50 16 21 C -0.22 -6.30 10.51 -15.06 -0.16 -6.46 16 22 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -28.04 11.58 55.49 0.64 -27.40 16 25 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16 32 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.17 0.04 8.06 -52.49 -0.42 -0.39 16 34 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.94 6.54 -51.93 -0.34 0.60 16 37 H 0.06 0.72 6.64 -51.93 -0.34 0.38 16 38 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 39 H 0.07 1.60 7.67 -51.93 -0.40 1.20 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.27 6.90 -51.93 -0.36 0.91 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.68 7.49 -51.92 -0.39 1.29 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -38.84 372.20 -8.48 -47.32 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.01 Total: -3.11 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -2.92 Total: 11.31 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.22 Total: -67.28 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.84 -8.48 -47.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085978978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.922 kcal (2) G-P(sol) polarization free energy of solvation -38.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds