Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30057 * 124.93885 * 2 1 4 4 C 1.35785 * 109.42806 * 179.97438 * 3 2 1 5 5 C 1.39487 * 133.74144 * 180.02562 * 4 3 2 6 6 C 1.39674 * 118.05160 * 179.97438 * 5 4 3 7 7 C 1.47694 * 120.38058 * 179.97438 * 6 5 4 8 8 O 1.21572 * 120.00067 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99622 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99596 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46693 * 179.97438 * 10 9 7 12 12 H 1.08994 * 112.85296 * 314.66788 * 11 10 9 13 13 C 1.53789 * 113.61451 * 85.86217 * 11 10 9 14 14 C 1.53955 * 87.01961 * 139.94776 * 13 11 10 15 15 H 1.09000 * 113.61398 * 89.19893 * 14 13 11 16 16 N 1.46496 * 113.66932 * 220.06538 * 14 13 11 17 17 C 1.36937 * 120.00108 * 252.56467 * 16 14 13 18 18 H 1.07995 * 119.99998 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99838 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00082 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00135 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46693 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47358 * 119.99553 * 21 19 17 24 24 H 1.48500 * 109.47242 * 240.00293 * 21 19 17 25 25 C 1.53783 * 87.11449 * 334.63865 * 14 13 11 26 26 C 1.39977 * 119.23248 * 0.02562 * 6 5 4 27 27 N 1.31386 * 121.16169 * 0.02562 * 26 6 5 28 28 C 1.32542 * 121.79250 * 0.02562 * 27 26 6 29 29 N 1.36163 * 124.94431 * 179.69259 * 2 1 3 30 30 H 0.97001 * 126.23324 * 359.97438 * 29 2 1 31 31 H 1.09001 * 109.46953 * 90.02553 * 1 2 3 32 32 H 1.09000 * 109.47318 * 210.02151 * 1 2 3 33 33 H 1.09000 * 109.47161 * 330.02781 * 1 2 3 34 34 H 1.08000 * 120.97536 * 359.96068 * 5 4 3 35 35 H 0.96997 * 120.00274 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46699 * 299.99507 * 10 9 7 37 37 H 1.08995 * 109.47374 * 59.99615 * 10 9 7 38 38 H 1.09000 * 113.61212 * 254.52751 * 13 11 10 39 39 H 1.08997 * 113.61355 * 25.42980 * 13 11 10 40 40 H 0.97005 * 119.99726 * 72.56266 * 16 14 13 41 41 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 42 42 H 1.09004 * 113.61170 * 270.81841 * 25 14 13 43 43 H 1.08995 * 113.69221 * 139.91600 * 25 14 13 44 44 H 1.08004 * 119.41636 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5603 0.7030 0.0006 5 6 4.7591 1.4162 0.0013 6 6 5.9538 0.6926 0.0023 7 6 7.2528 1.3955 0.0025 8 8 7.2863 2.6108 0.0023 9 7 8.4009 0.6896 0.0029 10 6 9.6894 1.3868 0.0037 11 6 10.8243 0.3608 0.0048 12 1 10.6643 -0.4467 0.7191 13 6 11.2141 -0.1280 -1.4003 14 6 12.6780 -0.0684 -0.9273 15 1 13.0266 -0.9937 -0.4685 16 7 13.6025 0.4482 -1.9395 17 6 14.4721 -0.4013 -2.5697 18 1 14.4767 -1.4521 -2.3204 19 6 15.3478 0.0882 -3.5292 20 7 15.3419 1.3687 -3.8335 21 14 16.5346 -1.0705 -4.3885 22 1 16.3432 -2.4489 -3.8702 23 1 16.2748 -1.0504 -5.8504 24 1 17.9296 -0.6333 -4.1275 25 6 12.2244 0.9911 0.0908 26 6 5.9057 -0.7063 0.0020 27 7 4.7588 -1.3472 0.0003 28 6 3.5997 -0.7043 -0.0017 29 7 2.2870 -1.1161 0.0060 30 1 1.9740 -2.0342 0.0113 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 4.7634 2.4962 0.0008 35 1 8.3741 -0.2800 0.0028 36 1 9.7648 2.0117 -0.8862 37 1 9.7639 2.0115 0.8938 38 1 10.8671 -1.1369 -1.6234 39 1 10.9814 0.5853 -2.1909 40 1 13.5987 1.3921 -2.1632 41 1 15.9535 1.7107 -4.5042 42 1 12.2683 2.0110 -0.2915 43 1 12.6912 0.8856 1.0701 44 1 6.8277 -1.2688 0.0032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086104596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = 76.935745 kcal Electronic energy + Delta-G solvation = -26038.234461 eV Core-core repulsion = 22185.177193 eV Total energy + Delta-G solvation = -3853.057269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88579 -40.19201 -38.74457 -38.08703 -34.82383 -34.12979 -33.33782 -32.11824 -31.80077 -30.30056 -28.87691 -27.16392 -25.09563 -24.49873 -23.70120 -23.38754 -21.75644 -21.06965 -20.87844 -19.17486 -18.90182 -18.27855 -17.11044 -17.03745 -16.49995 -16.41922 -15.71962 -15.38529 -14.88994 -14.67028 -14.24591 -14.16359 -14.03511 -13.79972 -13.60010 -13.41585 -13.32384 -13.13674 -12.92377 -12.51180 -11.91720 -11.82515 -11.63101 -11.53498 -11.39976 -11.23526 -10.85747 -10.55942 -10.38499 -10.13689 -10.04092 -9.83155 -9.64956 -9.49690 -9.38909 -9.07077 -8.93474 -8.87067 -6.96082 -5.78351 -3.07160 0.28432 0.39139 1.94942 2.18284 2.66269 2.91939 3.42510 3.47771 3.48161 3.49929 3.50447 3.81932 4.12567 4.38943 4.44789 4.48769 4.58312 4.68322 4.80924 4.85959 4.96843 5.03466 5.19474 5.22200 5.31523 5.46794 5.49873 5.57648 5.64964 5.81646 5.84613 5.92740 5.99231 6.09385 6.22848 6.30778 6.35781 6.42572 6.53715 6.59378 6.82439 7.11483 7.17223 7.30161 7.36767 7.69652 8.05667 8.40212 9.51370 10.09865 10.43842 11.44046 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.001777 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.163057 B =15753.569833 C =16188.661159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.297 3.703 3 N -0.476 5.476 4 C -0.004 4.004 5 C 0.047 3.953 6 C -0.196 4.196 7 C 0.566 3.434 8 O -0.534 6.534 9 N -0.718 5.718 10 C 0.132 3.868 11 C -0.128 4.128 12 H 0.089 0.911 13 C -0.162 4.162 14 C 0.165 3.835 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.142 4.142 26 C 0.174 3.826 27 N -0.483 5.483 28 C 0.256 3.744 29 N -0.585 5.585 30 H 0.429 0.571 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.446 -6.013 11.332 33.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.029 3.971 3 N -0.197 5.197 4 C -0.124 4.124 5 C 0.019 3.981 6 C -0.204 4.204 7 C 0.352 3.648 8 O -0.412 6.412 9 N -0.369 5.369 10 C 0.009 3.991 11 C -0.147 4.147 12 H 0.107 0.893 13 C -0.203 4.203 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.182 4.182 26 C 0.005 3.995 27 N -0.196 5.196 28 C 0.020 3.980 29 N -0.200 5.200 30 H 0.269 0.731 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.175 0.825 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -30.581 -5.280 11.249 33.010 hybrid contribution 0.787 -1.262 -0.658 1.626 sum -29.795 -6.542 10.591 32.291 Atomic orbital electron populations 1.20463 0.83174 1.05220 1.04802 1.23783 0.95924 0.80213 0.97213 1.70490 1.00255 1.27444 1.21485 1.19570 0.92866 0.91563 1.08382 1.20865 0.87346 1.01391 0.88505 1.20700 0.94408 0.94901 1.10416 1.17788 0.83268 0.86966 0.76826 1.90808 1.87388 1.13215 1.49775 1.45933 1.05893 1.10311 1.74752 1.21503 0.80230 0.94881 1.02468 1.22655 0.93990 0.98175 0.99914 0.89279 1.23986 1.01304 1.00375 0.94624 1.21554 0.88311 0.95272 0.89543 0.90668 1.42421 1.40572 1.08779 1.43286 1.19353 1.11473 0.91340 1.15355 0.91029 1.24772 1.00117 0.96039 1.00015 1.69672 1.40597 1.11918 1.35764 0.86123 0.80920 0.79852 0.79315 1.20543 1.21876 1.21859 1.23443 0.93652 1.00619 1.00440 1.22747 0.94461 0.90394 0.91939 1.66386 0.95788 1.40529 1.16855 1.19074 0.86175 0.91254 1.01507 1.42736 1.03646 1.10734 1.62869 0.73075 0.88793 0.89713 0.87989 0.82527 0.76569 0.90872 0.91424 0.92710 0.90295 0.78056 0.93502 0.90064 0.91958 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.51 36.01 0.38 0.22 16 2 C 0.30 2.06 8.08 -154.75 -1.25 0.81 16 3 N -0.48 -5.08 11.29 -8.20 -0.09 -5.17 16 4 C 0.00 -0.05 7.23 -84.69 -0.61 -0.66 16 5 C 0.05 0.54 9.75 -38.58 -0.38 0.16 16 6 C -0.20 -2.13 5.89 -104.85 -0.62 -2.75 16 7 C 0.57 7.13 7.77 -12.40 -0.10 7.03 16 8 O -0.53 -8.72 16.40 5.30 0.09 -8.63 16 9 N -0.72 -7.69 5.51 -61.30 -0.34 -8.03 16 10 C 0.13 1.64 5.50 -4.04 -0.02 1.62 16 11 C -0.13 -1.61 3.75 -89.80 -0.34 -1.95 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.16 -2.57 7.45 -25.82 -0.19 -2.76 16 14 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 15 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 16 N -0.71 -17.59 5.40 -52.55 -0.28 -17.88 16 17 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.14 -2.18 7.40 -25.91 -0.19 -2.37 16 26 C 0.17 1.61 10.69 -17.09 -0.18 1.42 16 27 N -0.48 -5.01 10.36 -11.96 -0.12 -5.13 16 28 C 0.26 2.65 8.45 -155.64 -1.31 1.33 16 29 N -0.58 -3.98 6.20 -9.44 -0.06 -4.04 16 30 H 0.43 1.47 8.96 -40.82 -0.37 1.10 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.16 1.80 7.72 -52.49 -0.41 1.39 16 35 H 0.40 3.15 6.51 -40.82 -0.27 2.88 16 36 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 40 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.17 1.03 6.39 -52.48 -0.34 0.69 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -36.12 374.11 -10.69 -46.81 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.86 Total: 8.98 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -5.36 Total: -2.41 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.17 Total: -67.63 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.12 -10.69 -46.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086104596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.747 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds