Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39967 * 120.32148 * 2 1 4 4 N 1.31501 * 120.10648 * 179.97438 * 3 2 1 5 5 C 1.33388 * 120.85352 * 359.75389 * 4 3 2 6 6 C 1.40800 * 132.47636 * 179.61950 * 5 4 3 7 7 C 1.46584 * 126.54316 * 0.68824 * 6 5 4 8 8 O 1.21720 * 119.99712 * 359.71191 * 7 6 5 9 9 N 1.34772 * 120.00428 * 179.70732 * 7 6 5 10 10 C 1.46494 * 120.00463 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47391 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.90825 * 316.25137 * 11 10 9 13 13 C 1.53962 * 113.66529 * 87.55384 * 11 10 9 14 14 C 1.53782 * 87.11063 * 139.88900 * 13 11 10 15 15 H 1.08997 * 113.61225 * 89.18406 * 14 13 11 16 16 N 1.46499 * 113.61191 * 220.09091 * 14 13 11 17 17 C 1.36942 * 119.99692 * 252.49800 * 16 14 13 18 18 H 1.08002 * 120.00087 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99940 * 180.02562 * 17 16 14 20 20 N 1.31613 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99698 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47253 * 90.00077 * 21 19 17 23 23 H 1.48500 * 109.46952 * 209.99725 * 21 19 17 24 24 H 1.48497 * 109.47274 * 329.99629 * 21 19 17 25 25 C 1.53781 * 87.08260 * 334.63747 * 14 13 11 26 26 C 1.40644 * 106.91978 * 180.42098 * 6 5 4 27 27 N 1.30694 * 108.72965 * 0.24858 * 26 6 5 28 28 N 1.36598 * 120.79398 * 0.52686 * 5 4 3 29 29 C 1.35757 * 120.32432 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46633 * 270.02095 * 1 2 3 31 31 H 1.08992 * 109.46848 * 30.02139 * 1 2 3 32 32 H 1.08998 * 109.46991 * 150.02278 * 1 2 3 33 33 H 1.07992 * 119.94465 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99857 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47287 * 60.00002 * 10 9 7 36 36 H 1.09004 * 109.47020 * 300.00283 * 10 9 7 37 37 H 1.08997 * 113.53543 * 25.33574 * 13 11 10 38 38 H 1.08998 * 113.73879 * 254.47172 * 13 11 10 39 39 H 0.96997 * 120.00777 * 72.49903 * 16 14 13 40 40 H 0.97003 * 119.99921 * 180.02562 * 20 19 17 41 41 H 1.09002 * 113.61445 * 139.98212 * 25 14 13 42 42 H 1.09002 * 113.61408 * 270.79943 * 25 14 13 43 43 H 1.08006 * 125.63434 * 180.20563 * 26 6 5 44 44 H 1.08001 * 120.42268 * 0.03999 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2082 0.0000 4 7 3.5287 1.2033 0.0005 5 6 4.2084 0.0556 0.0059 6 6 5.5865 -0.2333 0.0009 7 6 6.6823 0.7403 0.0015 8 8 6.4372 1.9325 0.0015 9 7 7.9613 0.3153 0.0021 10 6 9.0565 1.2883 0.0021 11 6 10.3958 0.5486 0.0023 12 1 10.4166 -0.2913 0.6966 13 6 10.9078 0.1971 -1.4065 14 6 12.3115 0.5778 -0.9067 15 1 12.8568 -0.2543 -0.4613 16 7 13.1045 1.3175 -1.8916 17 6 14.1540 0.7062 -2.5241 18 1 14.3968 -0.3214 -2.2971 19 6 14.9058 1.4073 -3.4570 20 7 14.6102 2.6597 -3.7332 21 14 16.3378 0.5736 -4.3192 22 1 15.8556 -0.0761 -5.5644 23 1 17.3698 1.5866 -4.6572 24 1 16.9267 -0.4524 -3.4216 25 6 11.6137 1.4796 0.1251 26 6 5.7110 -1.6342 0.0014 27 7 4.5153 -2.1618 0.0010 28 7 3.5553 -1.1441 0.0003 29 6 2.1925 -1.1718 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6781 2.1459 -0.0004 34 1 8.1567 -0.6348 0.0018 35 1 8.9866 1.9141 0.8918 36 1 8.9872 1.9134 -0.8881 37 1 10.5275 0.8581 -2.1853 38 1 10.8058 -0.8581 -1.6599 39 1 12.8862 2.2403 -2.0958 40 1 15.1353 3.1495 -4.3854 41 1 12.0811 1.4595 1.1096 42 1 11.4277 2.4917 -0.2345 43 1 6.6411 -2.1832 0.0014 44 1 1.6647 -2.1141 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086213497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = 111.964755 kcal Electronic energy + Delta-G solvation = -26250.653653 eV Core-core repulsion = 22399.115356 eV Total energy + Delta-G solvation = -3851.538297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.88854 -39.57567 -38.72420 -38.12037 -34.84355 -34.47874 -33.34417 -32.97761 -30.48792 -29.97337 -27.98844 -26.80008 -25.32058 -25.01529 -24.05081 -23.22783 -22.48051 -20.97575 -20.46510 -19.19301 -18.76020 -17.70636 -17.20233 -16.94403 -16.67697 -15.95578 -15.70544 -15.09935 -14.77432 -14.55294 -14.51781 -14.15345 -14.02933 -13.77843 -13.48764 -13.39068 -13.14709 -13.00848 -12.83314 -12.82825 -11.94703 -11.82582 -11.74519 -11.49248 -11.30594 -11.17848 -10.80336 -10.48088 -10.25577 -10.15462 -10.08620 -9.92772 -9.77423 -9.73045 -9.42503 -8.89955 -8.82439 -8.33432 -6.92228 -5.74865 -3.03463 -0.07060 0.28454 1.45807 1.78714 2.73507 3.21908 3.36159 3.45030 3.49956 3.51620 3.51863 3.66631 3.79633 4.09374 4.26265 4.61365 4.62742 4.67518 4.78505 4.88493 5.01478 5.07067 5.10510 5.24869 5.26928 5.35053 5.47919 5.51159 5.59583 5.72538 5.89663 5.91786 5.96627 6.05453 6.14837 6.35221 6.39377 6.43749 6.59016 6.66999 6.84545 6.89943 7.16270 7.17880 7.66628 7.72178 8.43006 8.43790 9.54718 10.13839 10.47950 11.47544 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.001822 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.921213 B =15366.382049 C =15523.279934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.188 4.188 3 C 0.187 3.813 4 N -0.436 5.436 5 C 0.313 3.687 6 C -0.283 4.283 7 C 0.591 3.409 8 O -0.532 6.532 9 N -0.724 5.724 10 C 0.136 3.864 11 C -0.127 4.127 12 H 0.088 0.912 13 C -0.160 4.160 14 C 0.165 3.835 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.142 4.142 26 C 0.128 3.872 27 N -0.311 5.311 28 N -0.304 5.304 29 C 0.158 3.842 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.206 0.794 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.305 -9.191 11.101 34.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.194 4.194 3 C 0.004 3.996 4 N -0.145 5.145 5 C 0.081 3.919 6 C -0.300 4.300 7 C 0.378 3.622 8 O -0.409 6.409 9 N -0.376 5.376 10 C 0.013 3.987 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.201 4.201 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.182 4.182 26 C -0.053 4.053 27 N -0.133 5.133 28 N -0.072 5.072 29 C 0.023 3.977 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.201 0.799 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.223 0.777 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -31.143 -8.878 11.009 34.204 hybrid contribution 0.732 -0.709 -0.640 1.204 sum -30.411 -9.587 10.369 33.530 Atomic orbital electron populations 1.20634 0.87306 1.04196 1.03465 1.20641 0.99268 0.92312 1.07163 1.23651 0.88980 0.98659 0.88307 1.68367 1.08451 1.23919 1.13775 1.20416 0.93203 0.81168 0.97089 1.19503 0.90305 0.93610 1.26557 1.16753 0.81600 0.87234 0.76600 1.90849 1.83974 1.16215 1.49819 1.45757 1.05216 1.10331 1.76259 1.21394 0.84126 0.90996 1.02144 1.22665 0.92732 0.99429 0.99783 0.89394 1.23977 1.00891 1.00580 0.94701 1.21526 0.89437 0.94048 0.89700 0.90706 1.42415 1.34186 1.13269 1.45211 1.19312 1.05583 0.96073 1.16511 0.91107 1.24768 0.99871 0.96127 1.00218 1.69662 1.42172 1.09003 1.37160 0.86191 0.82186 0.78170 0.79641 1.21755 1.21787 1.20760 1.23440 0.95230 0.99204 1.00305 1.24183 0.96658 0.92364 0.92099 1.77606 0.96342 1.08227 1.31080 1.47022 1.06127 1.07948 1.46124 1.21967 0.79318 1.01321 0.95121 0.90154 0.89987 0.90660 0.79875 0.77066 0.91779 0.91238 0.90358 0.92803 0.78053 0.93480 0.92057 0.90105 0.77721 0.80055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.08 10.03 36.01 0.36 0.28 16 2 C -0.19 -0.87 5.86 -104.86 -0.61 -1.49 16 3 C 0.19 1.31 10.97 -17.05 -0.19 1.12 16 4 N -0.44 -5.36 10.26 -12.00 -0.12 -5.49 16 5 C 0.31 4.03 7.74 -155.83 -1.21 2.82 16 6 C -0.28 -3.69 6.17 -104.66 -0.65 -4.34 16 7 C 0.59 8.93 7.78 -12.90 -0.10 8.83 16 8 O -0.53 -10.21 16.74 5.17 0.09 -10.12 16 9 N -0.72 -9.06 5.55 -61.65 -0.34 -9.40 16 10 C 0.14 1.91 5.51 -4.05 -0.02 1.89 16 11 C -0.13 -1.73 3.76 -89.71 -0.34 -2.07 16 12 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 13 C -0.16 -2.69 7.44 -25.82 -0.19 -2.88 16 14 C 0.16 3.23 4.48 -67.12 -0.30 2.93 16 15 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 16 N -0.71 -18.02 5.40 -52.64 -0.28 -18.30 16 17 C -0.24 -6.81 9.97 -15.06 -0.15 -6.96 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.14 -2.31 7.39 -25.92 -0.19 -2.50 16 26 C 0.13 1.26 11.44 -17.13 -0.20 1.07 16 27 N -0.31 -3.32 12.58 30.77 0.39 -2.94 16 28 N -0.30 -3.14 3.86 -11.97 -0.05 -3.19 16 29 C 0.16 0.98 10.94 -16.45 -0.18 0.80 16 30 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.08 0.00 8.10 -51.93 -0.42 -0.43 16 32 H 0.07 -0.01 8.08 -51.93 -0.42 -0.43 16 33 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.40 3.70 7.39 -40.82 -0.30 3.40 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.11 7.84 -51.93 -0.41 0.71 16 37 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 10.40 7.92 -40.82 -0.32 10.08 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 43 H 0.21 1.17 7.46 -52.48 -0.39 0.78 16 44 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -38.33 377.14 -9.02 -47.35 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.02 Total: 7.65 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.06 Total: -1.00 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: 0.32 Total: -67.07 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.33 -9.02 -47.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086213497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.313 kcal (2) G-P(sol) polarization free energy of solvation -38.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds