Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30897 * 119.96390 * 2 1 4 4 C 1.34152 * 121.17018 * 180.02562 * 3 2 1 5 5 C 1.38711 * 132.25303 * 180.02562 * 4 3 2 6 6 C 1.38845 * 107.67516 * 179.97438 * 5 4 3 7 7 N 1.31296 * 108.99276 * 359.97438 * 6 5 4 8 8 N 1.37266 * 120.90026 * 359.97438 * 4 3 2 9 9 C 1.36078 * 119.97355 * 359.97438 * 8 4 3 10 10 C 1.38059 * 118.89178 * 0.04055 * 9 8 4 11 11 C 1.47598 * 120.50483 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99937 * 186.14884 * 11 10 9 13 13 N 1.34772 * 119.99985 * 6.15369 * 11 10 9 14 14 C 1.46501 * 120.00239 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.85002 * 43.80599 * 15 14 13 17 17 C 1.53786 * 113.61371 * 175.00157 * 15 14 13 18 18 C 1.53783 * 87.07938 * 139.98314 * 17 15 14 19 19 H 1.08995 * 113.61781 * 89.19960 * 18 17 15 20 20 N 1.46502 * 113.61458 * 220.02250 * 18 17 15 21 21 C 1.36933 * 120.00218 * 205.00418 * 20 18 17 22 22 H 1.08004 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00571 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99725 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00503 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47163 * 89.99676 * 25 23 21 27 27 H 1.48498 * 109.47402 * 209.99919 * 25 23 21 28 28 H 1.48498 * 109.47042 * 330.00314 * 25 23 21 29 29 C 1.53784 * 87.08368 * 334.56509 * 18 17 15 30 30 H 1.08999 * 109.46732 * 96.44419 * 1 2 3 31 31 H 1.08998 * 109.47273 * 216.44589 * 1 2 3 32 32 H 1.09001 * 109.46955 * 336.44293 * 1 2 3 33 33 H 1.07992 * 126.16507 * 0.22246 * 5 4 3 34 34 H 1.08002 * 125.50404 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.55126 * 179.97438 * 9 8 4 36 36 H 0.96997 * 120.00166 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47244 * 300.00634 * 14 13 11 38 38 H 1.09010 * 109.46716 * 59.99915 * 14 13 11 39 39 H 1.08995 * 113.61605 * 254.53138 * 17 15 14 40 40 H 1.09000 * 113.61113 * 25.43640 * 17 15 14 41 41 H 0.97005 * 119.99920 * 24.99597 * 20 18 17 42 42 H 0.97001 * 120.00047 * 180.02562 * 24 23 21 43 43 H 1.08996 * 113.61539 * 270.88893 * 29 18 17 44 44 H 1.08998 * 113.61642 * 139.97813 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1623 -0.0005 5 6 4.4129 2.2084 -0.0002 6 6 5.6874 1.6576 -0.0005 7 7 5.5872 0.3485 -0.0004 8 7 4.2316 -0.0005 -0.0005 9 6 3.5944 -1.2029 0.0005 10 6 2.2140 -1.2263 0.0007 11 6 1.4865 -2.5105 0.0013 12 8 0.2759 -2.5234 -0.1114 13 7 2.1640 -3.6688 0.1267 14 6 1.4418 -4.9434 0.1278 15 6 2.4384 -6.0941 0.2819 16 1 3.1958 -5.8992 1.0411 17 6 1.7711 -7.4730 0.4172 18 6 2.8904 -8.0159 -0.4868 19 1 3.7718 -8.3484 0.0614 20 7 2.4267 -8.9994 -1.4687 21 6 3.2988 -9.9264 -1.9737 22 1 4.3287 -9.9323 -1.6485 23 6 2.8594 -10.8587 -2.9036 24 7 1.6042 -10.8519 -3.2995 25 14 4.0493 -12.1228 -3.5931 26 1 4.0325 -13.3366 -2.7377 27 1 3.6415 -12.4849 -4.9743 28 1 5.4200 -11.5519 -3.6152 29 6 3.0159 -6.5919 -1.0536 30 1 -0.3633 -0.1153 -1.0212 31 1 -0.3634 -0.8267 0.6105 32 1 -0.3633 0.9420 0.4107 33 1 4.1738 3.2615 0.0040 34 1 6.6119 2.2158 0.0001 35 1 4.1592 -2.1234 0.0001 36 1 3.1297 -3.6585 0.2162 37 1 0.7356 -4.9602 0.9578 38 1 0.9007 -5.0552 -0.8119 39 1 1.7961 -7.8726 1.4309 40 1 0.7807 -7.5250 -0.0351 41 1 1.5017 -8.9940 -1.7609 42 1 1.2969 -11.5035 -3.9490 43 1 2.3658 -6.4031 -1.9079 44 1 4.0459 -6.2802 -1.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086238071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = 118.345819 kcal Electronic energy + Delta-G solvation = -26594.543947 eV Core-core repulsion = 22743.282354 eV Total energy + Delta-G solvation = -3851.261593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.80374 -40.35646 -38.80553 -38.03364 -35.32802 -34.48175 -33.35987 -32.43682 -30.65093 -29.95723 -28.44979 -27.36179 -25.20421 -25.08985 -23.94598 -23.01805 -21.90500 -21.28702 -21.18750 -19.30230 -18.95013 -18.17320 -17.09754 -16.81409 -16.65885 -16.04147 -15.72277 -15.55611 -14.98939 -14.78122 -14.58785 -14.36205 -14.02783 -13.88902 -13.60112 -13.36729 -13.25487 -13.00649 -12.52855 -12.14539 -12.01205 -11.91779 -11.77406 -11.71129 -11.48179 -11.30232 -10.88303 -10.61245 -10.51715 -10.31463 -10.18731 -9.97355 -9.93329 -9.88616 -9.56316 -9.25491 -8.91979 -8.39607 -7.01460 -5.82673 -3.11819 -0.16639 0.20773 1.47639 1.99719 2.49952 2.70014 3.06356 3.34588 3.39626 3.44955 3.46682 3.56125 3.63733 4.21689 4.40599 4.54078 4.67536 4.70608 4.84779 4.89071 4.95238 5.11938 5.25565 5.36340 5.38821 5.41440 5.42716 5.50468 5.69671 5.72299 5.78346 5.83893 5.95656 6.00666 6.02714 6.11309 6.21487 6.26509 6.32053 6.50947 6.73618 6.89148 7.03204 7.08381 7.21493 7.64745 7.79951 8.35801 9.46978 10.04630 10.38632 11.39576 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002100 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.983845 B =13331.056960 C =14293.232872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.257 3.743 3 N -0.473 5.473 4 C 0.268 3.732 5 C -0.267 4.267 6 C 0.101 3.899 7 N -0.311 5.311 8 N -0.320 5.320 9 C 0.214 3.786 10 C -0.235 4.235 11 C 0.575 3.425 12 O -0.519 6.519 13 N -0.718 5.718 14 C 0.132 3.868 15 C -0.130 4.130 16 H 0.089 0.911 17 C -0.141 4.141 18 C 0.166 3.834 19 H 0.075 0.925 20 N -0.712 5.712 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.162 4.162 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.202 0.798 35 H 0.184 0.816 36 H 0.397 0.603 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 25.456 10.106 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 N -0.185 5.185 4 C 0.043 3.957 5 C -0.297 4.297 6 C -0.079 4.079 7 N -0.134 5.134 8 N -0.090 5.090 9 C 0.075 3.925 10 C -0.245 4.245 11 C 0.360 3.640 12 O -0.396 6.396 13 N -0.369 5.369 14 C 0.010 3.990 15 C -0.149 4.149 16 H 0.107 0.893 17 C -0.181 4.181 18 C 0.054 3.946 19 H 0.093 0.907 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.204 4.204 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.183 0.817 34 H 0.219 0.781 35 H 0.201 0.799 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.925 25.135 9.946 27.189 hybrid contribution 1.030 -0.648 -0.559 1.339 sum 3.955 24.487 9.388 26.521 Atomic orbital electron populations 1.21144 0.85624 1.04776 1.05225 1.22033 0.98315 0.85429 0.85010 1.68124 1.03677 1.28081 1.18660 1.20900 0.88266 0.87003 0.99541 1.21052 0.89555 0.98899 1.20202 1.23998 0.99144 0.90929 0.93790 1.77981 0.88706 1.15635 1.31099 1.47143 1.07958 1.06020 1.47855 1.22514 0.91853 0.88861 0.89230 1.20685 0.91627 0.97298 1.14897 1.17338 0.86997 0.82408 0.77288 1.90790 1.12852 1.86513 1.49450 1.46007 1.10849 1.06247 1.73830 1.21558 0.94574 0.80162 1.02720 1.22672 0.98321 0.93737 1.00158 0.89315 1.23451 1.00393 0.93574 1.00702 1.21512 0.95073 0.87764 0.90295 0.90654 1.42411 1.11074 1.34343 1.47194 1.19290 0.92436 1.07362 1.18570 0.91111 1.24776 0.96327 0.99733 1.00064 1.69658 1.14369 1.38290 1.35613 0.86189 0.80074 0.81651 0.78261 1.21661 1.21736 1.20750 1.23980 0.99936 1.01004 0.95433 0.88704 0.87076 0.90365 0.81719 0.78112 0.79858 0.76844 0.91128 0.90602 0.91909 0.89986 0.78043 0.93411 0.90230 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.93 36.01 0.32 -0.64 16 2 C 0.26 2.65 6.87 -81.73 -0.56 2.09 16 3 N -0.47 -5.37 10.37 -8.17 -0.08 -5.45 16 4 C 0.27 2.99 7.91 -155.32 -1.23 1.76 16 5 C -0.27 -2.38 10.91 -39.18 -0.43 -2.80 16 6 C 0.10 0.79 11.95 -17.56 -0.21 0.58 16 7 N -0.31 -3.23 12.65 30.49 0.39 -2.84 16 8 N -0.32 -3.38 3.88 -11.68 -0.05 -3.43 16 9 C 0.21 1.84 10.82 -15.73 -0.17 1.67 16 10 C -0.23 -2.23 5.88 -104.88 -0.62 -2.85 16 11 C 0.57 5.99 7.71 -12.44 -0.10 5.89 16 12 O -0.52 -6.72 13.44 5.29 0.07 -6.65 16 13 N -0.72 -6.52 5.51 -61.33 -0.34 -6.86 16 14 C 0.13 1.44 5.51 -4.04 -0.02 1.42 16 15 C -0.13 -1.51 3.75 -89.80 -0.34 -1.84 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.14 -2.06 7.39 -25.92 -0.19 -2.25 16 18 C 0.17 3.02 4.48 -67.11 -0.30 2.72 16 19 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 20 N -0.71 -17.19 5.40 -52.64 -0.28 -17.48 16 21 C -0.25 -6.64 9.97 -15.06 -0.15 -6.79 16 22 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 25 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C -0.16 -2.46 7.43 -25.91 -0.19 -2.65 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.05 5.90 -51.93 -0.31 0.74 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.20 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.18 0.99 6.49 -52.49 -0.34 0.65 16 36 H 0.40 2.63 6.58 -40.82 -0.27 2.36 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.96 7.84 -51.92 -0.41 0.55 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 41 H 0.39 9.93 7.92 -40.82 -0.32 9.60 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -33.55 370.12 -9.12 -42.67 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.82 Total: 8.61 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.28 Total: -4.16 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.36 Total: -63.05 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.07 Total: -6.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.55 -9.12 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086238071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.016 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds