Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30897 * 119.96390 * 2 1 4 4 C 1.34152 * 121.17018 * 180.02562 * 3 2 1 5 5 C 1.38711 * 132.25303 * 180.02562 * 4 3 2 6 6 C 1.38845 * 107.67516 * 179.97438 * 5 4 3 7 7 N 1.31296 * 108.99276 * 359.97438 * 6 5 4 8 8 N 1.37266 * 120.90026 * 359.97438 * 4 3 2 9 9 C 1.36078 * 119.97355 * 359.97438 * 8 4 3 10 10 C 1.38059 * 118.89178 * 0.04055 * 9 8 4 11 11 C 1.47598 * 120.50483 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99937 * 186.14884 * 11 10 9 13 13 N 1.34772 * 119.99985 * 6.15369 * 11 10 9 14 14 C 1.46501 * 120.00239 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.85002 * 43.80599 * 15 14 13 17 17 C 1.53786 * 113.61371 * 175.00157 * 15 14 13 18 18 C 1.53783 * 87.07938 * 139.98314 * 17 15 14 19 19 H 1.08995 * 113.61781 * 89.19960 * 18 17 15 20 20 N 1.46502 * 113.61458 * 220.02250 * 18 17 15 21 21 C 1.36933 * 120.00218 * 205.00418 * 20 18 17 22 22 H 1.08004 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00571 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99725 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00503 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47163 * 89.99676 * 25 23 21 27 27 H 1.48498 * 109.47402 * 209.99919 * 25 23 21 28 28 H 1.48498 * 109.47042 * 330.00314 * 25 23 21 29 29 C 1.53784 * 87.08368 * 334.56509 * 18 17 15 30 30 H 1.08999 * 109.46732 * 96.44419 * 1 2 3 31 31 H 1.08998 * 109.47273 * 216.44589 * 1 2 3 32 32 H 1.09001 * 109.46955 * 336.44293 * 1 2 3 33 33 H 1.07992 * 126.16507 * 0.22246 * 5 4 3 34 34 H 1.08002 * 125.50404 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.55126 * 179.97438 * 9 8 4 36 36 H 0.96997 * 120.00166 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47244 * 300.00634 * 14 13 11 38 38 H 1.09010 * 109.46716 * 59.99915 * 14 13 11 39 39 H 1.08995 * 113.61605 * 254.53138 * 17 15 14 40 40 H 1.09000 * 113.61113 * 25.43640 * 17 15 14 41 41 H 0.97005 * 119.99920 * 24.99597 * 20 18 17 42 42 H 0.97001 * 120.00047 * 180.02562 * 24 23 21 43 43 H 1.08996 * 113.61539 * 270.88893 * 29 18 17 44 44 H 1.08998 * 113.61642 * 139.97813 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1623 -0.0005 5 6 4.4129 2.2084 -0.0002 6 6 5.6874 1.6576 -0.0005 7 7 5.5872 0.3485 -0.0004 8 7 4.2316 -0.0005 -0.0005 9 6 3.5944 -1.2029 0.0005 10 6 2.2140 -1.2263 0.0007 11 6 1.4865 -2.5105 0.0013 12 8 0.2759 -2.5234 -0.1114 13 7 2.1640 -3.6688 0.1267 14 6 1.4418 -4.9434 0.1278 15 6 2.4384 -6.0941 0.2819 16 1 3.1958 -5.8992 1.0411 17 6 1.7711 -7.4730 0.4172 18 6 2.8904 -8.0159 -0.4868 19 1 3.7718 -8.3484 0.0614 20 7 2.4267 -8.9994 -1.4687 21 6 3.2988 -9.9264 -1.9737 22 1 4.3287 -9.9323 -1.6485 23 6 2.8594 -10.8587 -2.9036 24 7 1.6042 -10.8519 -3.2995 25 14 4.0493 -12.1228 -3.5931 26 1 4.0325 -13.3366 -2.7377 27 1 3.6415 -12.4849 -4.9743 28 1 5.4200 -11.5519 -3.6152 29 6 3.0159 -6.5919 -1.0536 30 1 -0.3633 -0.1153 -1.0212 31 1 -0.3634 -0.8267 0.6105 32 1 -0.3633 0.9420 0.4107 33 1 4.1738 3.2615 0.0040 34 1 6.6119 2.2158 0.0001 35 1 4.1592 -2.1234 0.0001 36 1 3.1297 -3.6585 0.2162 37 1 0.7356 -4.9602 0.9578 38 1 0.9007 -5.0552 -0.8119 39 1 1.7961 -7.8726 1.4309 40 1 0.7807 -7.5250 -0.0351 41 1 1.5017 -8.9940 -1.7609 42 1 1.2969 -11.5035 -3.9490 43 1 2.3658 -6.4031 -1.9079 44 1 4.0459 -6.2802 -1.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086238071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 95.930438 kcal Electronic energy + Delta-G solvation = -26595.515951 eV Core-core repulsion = 22743.282354 eV Total energy + Delta-G solvation = -3852.233597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.49478 -41.19056 -39.94951 -38.85388 -36.28562 -35.54571 -34.86242 -33.16913 -32.22747 -30.96378 -29.17807 -28.44833 -26.42731 -26.06858 -25.53599 -23.80867 -22.66408 -22.36150 -22.08989 -20.54926 -19.73434 -19.16524 -18.83643 -17.54603 -17.38765 -17.05954 -16.59175 -16.44694 -16.33487 -15.98083 -15.57695 -15.18274 -15.15553 -14.97467 -14.72516 -14.48550 -14.25754 -13.94965 -13.42054 -13.21559 -13.19980 -13.01967 -12.90725 -12.84944 -12.65412 -12.46082 -12.41518 -12.18931 -12.06597 -11.54782 -11.53885 -11.29531 -11.08480 -10.83058 -10.74211 -10.65143 -10.10971 -9.09190 -8.95969 -7.94087 -5.21817 -0.84672 -0.52371 0.81229 1.32328 1.47532 1.48738 1.57014 1.76871 1.90216 2.31433 2.56976 2.65650 2.92534 3.00862 3.37835 3.50243 3.72339 3.76270 3.78286 3.93335 4.07324 4.10556 4.28878 4.30422 4.38069 4.44224 4.59442 4.61771 4.70261 4.74825 4.81206 4.89370 4.99851 5.02362 5.08099 5.10220 5.21243 5.29568 5.38535 5.41861 5.43960 5.54034 5.75823 6.22773 6.28643 6.34850 6.48519 7.03452 7.34230 8.13693 8.34406 9.29331 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002100 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.983845 B =13331.056960 C =14293.232872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.248 3.752 3 N -0.492 5.492 4 C 0.238 3.762 5 C -0.268 4.268 6 C 0.112 3.888 7 N -0.334 5.334 8 N -0.332 5.332 9 C 0.223 3.777 10 C -0.243 4.243 11 C 0.580 3.420 12 O -0.548 6.548 13 N -0.707 5.707 14 C 0.139 3.861 15 C -0.096 4.096 16 H 0.123 0.877 17 C -0.136 4.136 18 C 0.140 3.860 19 H 0.079 0.921 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.268 1.268 29 C -0.155 4.155 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.243 0.757 35 H 0.215 0.785 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 26.887 11.390 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 N -0.205 5.205 4 C 0.013 3.987 5 C -0.298 4.298 6 C -0.068 4.068 7 N -0.157 5.157 8 N -0.102 5.102 9 C 0.086 3.914 10 C -0.254 4.254 11 C 0.365 3.635 12 O -0.427 6.427 13 N -0.359 5.359 14 C 0.016 3.984 15 C -0.115 4.115 16 H 0.141 0.859 17 C -0.175 4.175 18 C 0.030 3.970 19 H 0.097 0.903 20 N -0.368 5.368 21 C -0.372 4.372 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.193 1.193 29 C -0.196 4.196 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.259 0.741 35 H 0.232 0.768 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.301 26.610 11.279 29.384 hybrid contribution 0.388 -0.963 -0.894 1.370 sum 5.689 25.647 10.385 28.249 Atomic orbital electron populations 1.21092 0.85090 1.04951 1.05064 1.22255 0.98869 0.85737 0.84830 1.68117 1.04127 1.28549 1.19731 1.21324 0.88579 0.88066 1.00691 1.21482 0.89701 0.99521 1.19120 1.24706 1.00252 0.90192 0.91615 1.77942 0.88659 1.17095 1.31959 1.47317 1.08081 1.06343 1.48440 1.22948 0.91710 0.89556 0.87235 1.20473 0.92043 0.96438 1.16412 1.17390 0.86620 0.82810 0.76644 1.90783 1.14176 1.86922 1.50839 1.45801 1.11530 1.05221 1.73330 1.21338 0.94432 0.80613 1.02011 1.22490 0.98179 0.92353 0.98506 0.85931 1.23323 0.98645 0.95136 1.00412 1.21990 0.96688 0.87844 0.90429 0.90306 1.42638 1.10184 1.35371 1.48573 1.19716 0.93053 1.07043 1.17393 0.90377 1.25575 0.97911 1.02310 1.01437 1.69817 1.16230 1.39373 1.36803 0.85168 0.78618 0.79269 0.76898 1.21474 1.22550 1.19325 1.23748 1.00592 0.98734 0.96484 0.88775 0.87766 0.89424 0.80003 0.74074 0.76838 0.75110 0.90536 0.92599 0.90339 0.91249 0.79608 0.94155 0.92400 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.93 71.24 0.64 -1.21 16 2 C 0.25 5.03 6.87 43.51 0.30 5.33 16 3 N -0.49 -10.98 10.37 -179.75 -1.86 -12.85 16 4 C 0.24 5.05 7.91 133.01 1.05 6.10 16 5 C -0.27 -4.27 10.91 22.53 0.25 -4.03 16 6 C 0.11 1.44 11.95 84.92 1.01 2.45 16 7 N -0.33 -6.18 12.65 -57.45 -0.73 -6.90 16 8 N -0.33 -6.48 3.88 -190.86 -0.74 -7.22 16 9 C 0.22 3.44 10.82 83.99 0.91 4.35 16 10 C -0.24 -4.38 5.88 -20.03 -0.12 -4.49 16 11 C 0.58 11.39 7.71 86.71 0.67 12.06 16 12 O -0.55 -14.01 13.44 -3.99 -0.05 -14.07 16 13 N -0.71 -11.19 5.51 -466.20 -2.57 -13.76 16 14 C 0.14 2.77 5.51 86.38 0.48 3.24 16 15 C -0.10 -1.96 3.75 -10.26 -0.04 -2.00 16 16 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.14 -3.73 7.39 31.12 0.23 -3.50 16 18 C 0.14 4.95 4.48 45.52 0.20 5.15 16 19 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 20 N -0.73 -35.59 5.40 -320.44 -1.73 -37.32 16 21 C -0.24 -13.01 9.97 84.03 0.84 -12.18 16 22 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 25 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 29 C -0.15 -4.43 7.43 31.12 0.23 -4.20 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.99 5.90 -2.39 -0.01 1.98 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.24 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.22 1.65 6.49 -2.91 -0.02 1.63 16 36 H 0.41 4.02 6.58 -92.71 -0.61 3.41 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.38 7.84 -2.38 -0.02 1.36 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 41 H 0.37 19.76 7.92 -92.70 -0.73 19.03 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.06 1.93 7.89 -2.39 -0.02 1.92 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -74.49 370.12 1.45 -73.04 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.29 Total: 27.45 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 7.11 Total: 2.97 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -7.35 Total: -137.09 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.05 Total: -14.07 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.49 1.45 -73.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086238071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.972 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds