Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35344 * 125.69268 * 2 1 4 4 N 1.36156 * 107.13830 * 180.02562 * 3 2 1 5 5 C 1.36227 * 133.92337 * 180.02562 * 4 3 2 6 6 C 1.35489 * 120.52163 * 179.97438 * 5 4 3 7 7 N 1.32691 * 122.11400 * 359.97438 * 6 5 4 8 8 C 1.32294 * 121.18873 * 0.02562 * 7 6 5 9 9 C 1.47797 * 120.59214 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00232 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99870 * 359.97438 * 9 8 7 12 12 C 1.46508 * 120.00015 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46810 * 179.97438 * 12 11 9 14 14 H 1.08998 * 112.85038 * 43.80987 * 13 12 11 15 15 C 1.53787 * 113.60890 * 175.00176 * 13 12 11 16 16 C 1.53784 * 87.07923 * 139.98364 * 15 13 12 17 17 H 1.09002 * 113.61478 * 89.11632 * 16 15 13 18 18 N 1.46497 * 113.61569 * 220.01663 * 16 15 13 19 19 C 1.36932 * 120.00479 * 205.00086 * 18 16 15 20 20 H 1.08003 * 119.99876 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00413 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99626 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00270 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46868 * 59.99725 * 23 21 19 25 25 H 1.48493 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46879 * 300.00246 * 23 21 19 27 27 C 1.53779 * 87.08045 * 334.56667 * 16 15 13 28 28 C 1.37562 * 107.00172 * 0.24822 * 4 3 2 29 29 N 1.31859 * 108.09927 * 359.59258 * 28 4 3 30 30 H 1.08992 * 109.47333 * 89.99352 * 1 2 3 31 31 H 1.08996 * 109.47180 * 209.99681 * 1 2 3 32 32 H 1.09004 * 109.47119 * 329.99275 * 1 2 3 33 33 H 1.08000 * 126.42772 * 0.02857 * 3 2 1 34 34 H 1.08001 * 119.73937 * 359.95768 * 5 4 3 35 35 H 1.07994 * 118.94176 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00101 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46643 * 60.00190 * 12 11 9 38 38 H 1.08993 * 109.47454 * 300.00286 * 12 11 9 39 39 H 1.09004 * 113.61202 * 254.53117 * 15 13 12 40 40 H 1.08994 * 113.61447 * 25.43549 * 15 13 12 41 41 H 0.97009 * 119.99534 * 24.99936 * 18 16 15 42 42 H 0.97001 * 119.99577 * 180.02562 * 22 21 19 43 43 H 1.09006 * 113.61307 * 270.88660 * 27 16 15 44 44 H 1.08999 * 113.69146 * 139.99146 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6660 -0.0006 5 6 4.7956 1.2954 -0.0004 6 6 5.9451 0.5783 -0.0006 7 7 5.9488 -0.7486 -0.0005 8 6 4.8190 -1.4368 -0.0007 9 6 4.8384 -2.9146 -0.0011 10 8 3.7938 -3.5363 -0.0017 11 7 6.0144 -3.5730 -0.0019 12 6 6.0337 -5.0380 -0.0017 13 6 7.4829 -5.5288 -0.0033 14 1 8.1171 -4.9780 0.6912 15 6 7.6160 -7.0560 0.1194 16 6 8.7518 -6.9611 -0.9130 17 1 9.7341 -6.8018 -0.4681 18 7 8.7412 -8.0450 -1.8985 19 6 9.9003 -8.4060 -2.5318 20 1 10.8226 -7.8919 -2.3045 21 6 9.8902 -9.4327 -3.4660 22 7 8.7664 -10.0596 -3.7426 23 14 11.4713 -9.9247 -4.3305 24 1 12.4695 -10.3658 -3.3233 25 1 11.1943 -11.0382 -5.2729 26 1 12.0072 -8.7613 -5.0818 27 6 8.0844 -5.6685 -1.4117 28 6 3.5502 -0.7091 -0.0066 29 7 2.2862 -1.0847 -0.0006 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.9651 2.1270 0.0004 34 1 4.8374 2.3746 -0.0004 35 1 6.8887 1.1036 -0.0009 36 1 6.8480 -3.0770 -0.0018 37 1 5.5241 -5.4081 -0.8914 38 1 5.5254 -5.4080 0.8885 39 1 7.9471 -7.3877 1.1036 40 1 6.7432 -7.6007 -0.2405 41 1 7.9129 -8.5070 -2.1023 42 1 8.7593 -10.7772 -4.3951 43 1 7.3396 -5.8340 -2.1902 44 1 8.7925 -4.8793 -1.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086247809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = 77.000078 kcal Electronic energy + Delta-G solvation = -26429.986054 eV Core-core repulsion = 22576.931575 eV Total energy + Delta-G solvation = -3853.054479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.12244 -40.99827 -39.89259 -39.35761 -36.08786 -35.60234 -34.97702 -32.86414 -32.20833 -31.02297 -29.20602 -28.58720 -26.43329 -26.17273 -25.35994 -24.40831 -22.61074 -22.19112 -21.71693 -20.57621 -19.56044 -19.31193 -18.91848 -17.65530 -17.46652 -17.04612 -16.68139 -16.46526 -16.34130 -16.01441 -15.64681 -15.33536 -15.12778 -14.92861 -14.60856 -14.43591 -14.29129 -14.01240 -13.49555 -13.38178 -13.21217 -13.14801 -13.01449 -12.90375 -12.61797 -12.45547 -12.24165 -12.07576 -11.70207 -11.55826 -11.48812 -11.31080 -11.08508 -10.90819 -10.77939 -10.18154 -9.85843 -9.26997 -8.95896 -7.92528 -5.20923 -1.09129 0.08280 1.19805 1.47834 1.49862 1.51317 1.57336 1.71726 1.90929 2.50576 2.58261 2.76191 2.90451 3.17831 3.38950 3.63454 3.73407 3.75893 3.90883 4.00403 4.07057 4.16746 4.23366 4.27553 4.37045 4.44333 4.56922 4.68816 4.76305 4.80570 4.84393 4.98829 5.00903 5.02080 5.04294 5.06330 5.22965 5.32157 5.42382 5.48442 5.53984 5.71914 5.74934 6.22295 6.29497 6.51420 6.73951 7.07193 7.34757 8.13599 8.35455 9.30832 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.001954 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.871913 B =14326.667936 C =14740.565914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.030 3.970 3 C -0.064 4.064 4 N -0.358 5.358 5 C 0.064 3.936 6 C 0.012 3.988 7 N -0.416 5.416 8 C 0.133 3.867 9 C 0.565 3.435 10 O -0.549 6.549 11 N -0.690 5.690 12 C 0.137 3.863 13 C -0.095 4.095 14 H 0.123 0.877 15 C -0.135 4.135 16 C 0.144 3.856 17 H 0.083 0.917 18 N -0.730 5.730 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.278 1.278 27 C -0.154 4.154 28 C 0.165 3.835 29 N -0.494 5.494 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.241 0.759 34 H 0.234 0.766 35 H 0.231 0.769 36 H 0.420 0.580 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.054 0.946 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 33.562 12.175 37.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.196 4.196 4 N -0.032 5.032 5 C -0.061 4.061 6 C -0.130 4.130 7 N -0.132 5.132 8 C -0.031 4.031 9 C 0.349 3.651 10 O -0.425 6.425 11 N -0.343 5.343 12 C 0.014 3.986 13 C -0.114 4.114 14 H 0.141 0.859 15 C -0.175 4.175 16 C 0.035 3.965 17 H 0.101 0.899 18 N -0.367 5.367 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.204 1.204 27 C -0.195 4.195 28 C -0.082 4.082 29 N -0.216 5.216 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.258 0.742 34 H 0.251 0.749 35 H 0.247 0.753 36 H 0.258 0.742 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.941 32.026 12.128 35.659 hybrid contribution 0.117 0.295 -0.940 0.992 sum -9.825 32.321 11.188 35.585 Atomic orbital electron populations 1.20294 0.84394 1.04358 1.03788 1.22024 0.98974 0.87677 1.01507 1.23273 0.79079 1.02759 1.14488 1.43176 1.07996 1.07883 1.44145 1.23805 0.81425 1.03328 0.97581 1.22960 1.00062 0.87921 1.02060 1.68018 1.26303 1.11010 1.07846 1.21674 0.85022 0.93840 1.02542 1.17614 0.84334 0.85468 0.77685 1.90868 1.33257 1.68219 1.50119 1.45695 1.08204 1.07625 1.72743 1.21371 0.97348 0.78259 1.01633 1.22478 0.94217 0.96430 0.98294 0.85888 1.23328 0.99110 0.94944 1.00081 1.21948 0.96978 0.87732 0.89839 0.89887 1.42636 1.08073 1.39578 1.46438 1.19715 0.89421 1.12601 1.15668 0.90210 1.25631 1.00186 0.99798 1.01792 1.69830 1.27153 1.27096 1.38280 0.85184 0.79182 0.77197 0.78044 1.20186 1.22502 1.20363 1.23741 0.99989 0.99943 0.95838 1.22468 0.94346 0.82215 1.09151 1.70504 0.99277 1.31341 1.20500 0.89772 0.91938 0.87190 0.74237 0.74918 0.75324 0.74186 0.93088 0.91044 0.90043 0.91434 0.79681 0.94159 0.92735 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.42 71.24 0.74 -0.16 16 2 C 0.03 0.61 7.07 41.63 0.29 0.90 16 3 C -0.06 -0.80 11.70 83.35 0.98 0.17 16 4 N -0.36 -5.72 2.95 -347.28 -1.02 -6.75 16 5 C 0.06 0.44 11.00 83.37 0.92 1.36 16 6 C 0.01 0.11 11.01 83.93 0.92 1.03 16 7 N -0.42 -7.74 9.67 -181.37 -1.75 -9.50 16 8 C 0.13 3.49 6.97 43.69 0.30 3.79 16 9 C 0.57 17.77 7.81 86.77 0.68 18.45 16 10 O -0.55 -21.94 16.23 -3.91 -0.06 -22.00 16 11 N -0.69 -17.94 5.55 -466.00 -2.59 -20.52 16 12 C 0.14 3.83 5.51 86.38 0.48 4.30 16 13 C -0.10 -2.48 3.75 -10.27 -0.04 -2.52 16 14 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.14 -4.27 7.39 31.12 0.23 -4.04 16 16 C 0.14 5.58 4.48 45.52 0.20 5.78 16 17 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 18 N -0.73 -37.49 5.40 -320.45 -1.73 -39.22 16 19 C -0.24 -13.59 9.97 84.03 0.84 -12.75 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 23 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 C -0.15 -5.14 7.43 31.12 0.23 -4.91 16 28 C 0.17 4.43 7.67 135.58 1.04 5.47 16 29 N -0.49 -15.11 10.74 -177.73 -1.91 -17.02 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.24 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.23 -1.17 8.06 -2.91 -0.02 -1.19 16 35 H 0.23 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.42 8.85 7.85 -92.71 -0.73 8.12 16 37 H 0.05 1.67 7.84 -2.39 -0.02 1.65 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 41 H 0.37 20.78 7.92 -92.70 -0.73 20.05 16 42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.05 2.09 7.90 -2.38 -0.02 2.07 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -87.35 377.13 1.11 -86.24 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.42 Total: 28.29 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 8.28 Total: 12.54 kcal Atomic # 7 Polarization: -145.16 SS G_CDS: -8.72 Total: -153.88 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -87.35 1.11 -86.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086247809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.242 kcal (2) G-P(sol) polarization free energy of solvation -87.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds