Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39970 * 119.94676 * 2 1 4 4 C 1.35750 * 119.35618 * 179.97438 * 3 2 1 5 5 N 1.36317 * 119.15842 * 359.97438 * 4 3 2 6 6 N 1.39905 * 132.16415 * 180.02562 * 5 4 3 7 7 C 1.30697 * 109.51916 * 179.71645 * 6 5 4 8 8 C 1.40647 * 108.72855 * 0.45562 * 7 6 5 9 9 C 1.46579 * 126.53884 * 179.81760 * 8 7 6 10 10 O 1.21713 * 119.99803 * 179.68488 * 9 8 7 11 11 N 1.34777 * 120.00170 * 359.68564 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27960 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 112.85199 * 316.19296 * 13 12 11 15 15 C 1.53782 * 113.61754 * 87.50116 * 13 12 11 16 16 C 1.53779 * 87.08303 * 139.98378 * 15 13 12 17 17 H 1.08993 * 113.61808 * 89.11654 * 16 15 13 18 18 N 1.46503 * 113.61285 * 220.02039 * 16 15 13 19 19 C 1.36934 * 119.99994 * 252.49415 * 18 16 15 20 20 H 1.08001 * 119.99827 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00054 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99868 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99762 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47297 * 90.00176 * 23 21 19 25 25 H 1.48503 * 109.46810 * 209.99586 * 23 21 19 26 26 H 1.48502 * 109.47426 * 329.99966 * 23 21 19 27 27 C 1.53781 * 87.08073 * 334.56659 * 16 15 13 28 28 C 1.36599 * 119.72688 * 0.02562 * 5 4 3 29 29 N 1.31499 * 119.94788 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46680 * 90.00230 * 1 2 3 31 31 H 1.09001 * 109.47378 * 209.99915 * 1 2 3 32 32 H 1.08993 * 109.47300 * 330.00473 * 1 2 3 33 33 H 1.07993 * 120.32053 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.42288 * 179.97438 * 4 3 2 35 35 H 1.08005 * 125.63540 * 180.28820 * 7 6 5 36 36 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 38 38 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 39 39 H 1.09004 * 113.61237 * 254.53427 * 15 13 12 40 40 H 1.08990 * 113.61193 * 25.42887 * 15 13 12 41 41 H 0.96999 * 120.00030 * 72.49620 * 18 16 15 42 42 H 0.96998 * 119.99926 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.61825 * 270.88536 * 27 16 15 44 44 H 1.09005 * 113.61700 * 139.98079 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5631 1.1988 0.0005 5 7 4.2150 0.0016 0.0016 6 7 5.5748 -0.3273 0.0028 7 6 5.7097 -1.6272 0.0096 8 6 4.4314 -2.2139 0.0026 9 6 4.1295 -3.6483 0.0029 10 8 2.9727 -4.0267 0.0022 11 7 5.1329 -4.5481 0.0041 12 6 4.8311 -5.9817 -0.0017 13 6 6.1375 -6.7779 -0.0059 14 1 6.8758 -6.3762 -0.7000 15 6 6.6965 -7.0520 1.4003 16 6 7.0639 -8.4570 0.8948 17 1 8.0564 -8.5147 0.4479 18 7 6.8180 -9.5167 1.8762 19 6 7.8712 -10.1253 2.5050 20 1 8.8831 -9.8240 2.2777 21 6 7.6382 -11.1290 3.4352 22 7 8.6505 -11.7136 4.0399 23 14 5.8879 -11.6496 3.8286 24 1 5.4799 -12.7456 2.9134 25 1 5.8172 -12.1259 5.2335 26 1 4.9753 -10.4916 3.6519 27 6 5.9331 -8.2966 -0.1349 28 6 3.4971 -1.1605 0.0016 29 7 2.1634 -1.1394 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6701 2.1506 -0.0004 34 1 4.1195 2.1244 0.0001 35 1 6.6477 -2.1625 0.0165 36 1 6.0548 -4.2465 0.0044 37 1 4.2540 -6.2351 0.8877 38 1 4.2529 -6.2277 -0.8923 39 1 7.5615 -6.4389 1.6534 40 1 5.9350 -7.0537 2.1801 41 1 5.9092 -9.7871 2.0805 42 1 8.4877 -12.4152 4.6897 43 1 4.9628 -8.6386 0.2252 44 1 6.1817 -8.6884 -1.1212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086255830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = 116.708588 kcal Electronic energy + Delta-G solvation = -26417.400067 eV Core-core repulsion = 22566.067478 eV Total energy + Delta-G solvation = -3851.332589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.88972 -39.62975 -38.79999 -38.23536 -34.65298 -34.60023 -33.27747 -32.65139 -30.83851 -30.19376 -28.85038 -27.38291 -25.14878 -24.69666 -23.76249 -23.00703 -22.78628 -20.90891 -20.45443 -19.38158 -18.78682 -17.70262 -17.37134 -17.05888 -16.69227 -15.93440 -15.76435 -15.16433 -14.82118 -14.78655 -14.49648 -14.29678 -14.11656 -14.05216 -13.53501 -13.27771 -13.12411 -12.85642 -12.63309 -12.32735 -12.16043 -11.94052 -11.92232 -11.72109 -11.55402 -11.48175 -10.86048 -10.43541 -10.29135 -10.21247 -10.11880 -10.01159 -9.80478 -9.71736 -9.50286 -8.96111 -8.86279 -8.37361 -7.23780 -5.76066 -3.11170 -0.09109 0.29724 1.45411 1.77065 2.70572 3.17736 3.24791 3.40388 3.43918 3.47903 3.48022 3.64582 3.72106 4.21230 4.45272 4.59092 4.60886 4.67793 4.79938 4.91447 4.95879 5.00124 5.06114 5.14919 5.21630 5.27821 5.43973 5.48852 5.58757 5.69813 5.75687 5.80482 5.87011 5.91381 5.99067 6.23039 6.27419 6.29879 6.50932 6.57428 6.75004 6.83527 7.03558 7.19409 7.61796 8.00713 8.38662 8.43934 9.22053 9.94966 10.15004 11.42193 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.002024 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.262226 B =13830.204624 C =14334.226657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.209 3.791 3 C -0.220 4.220 4 C 0.168 3.832 5 N -0.312 5.312 6 N -0.311 5.311 7 C 0.131 3.869 8 C -0.289 4.289 9 C 0.593 3.407 10 O -0.533 6.533 11 N -0.725 5.725 12 C 0.136 3.864 13 C -0.126 4.126 14 H 0.091 0.909 15 C -0.161 4.161 16 C 0.171 3.829 17 H 0.084 0.916 18 N -0.738 5.738 19 C -0.247 4.247 20 H 0.091 0.909 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.145 4.145 28 C 0.325 3.675 29 N -0.444 5.444 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.206 0.794 36 H 0.396 0.604 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.078 0.922 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.266 31.679 -11.923 36.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.047 3.953 3 C -0.244 4.244 4 C 0.032 3.968 5 N -0.081 5.081 6 N -0.133 5.133 7 C -0.051 4.051 8 C -0.305 4.305 9 C 0.379 3.621 10 O -0.410 6.410 11 N -0.377 5.377 12 C 0.013 3.987 13 C -0.146 4.146 14 H 0.109 0.891 15 C -0.201 4.201 16 C 0.060 3.940 17 H 0.102 0.898 18 N -0.377 5.377 19 C -0.377 4.377 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.202 1.202 27 C -0.185 4.185 28 C 0.092 3.908 29 N -0.157 5.157 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.189 0.811 34 H 0.202 0.798 35 H 0.223 0.777 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.407 31.420 -11.817 36.147 hybrid contribution -0.602 -0.118 0.438 0.754 sum -14.009 31.302 -11.379 36.132 Atomic orbital electron populations 1.20876 0.86622 1.04849 1.04359 1.22152 0.98354 0.87379 0.87400 1.21794 0.92441 1.01455 1.08671 1.22137 0.92704 0.88505 0.93421 1.47048 1.07784 1.06447 1.46788 1.77603 0.88652 1.15906 1.31124 1.24185 0.98355 0.90669 0.91908 1.19460 0.90494 0.93331 1.27241 1.16750 0.85192 0.83619 0.76490 1.90841 1.19713 1.80520 1.49894 1.45747 1.08863 1.06657 1.76386 1.21377 0.97099 0.78127 1.02068 1.22639 0.96229 0.95898 0.99791 0.89082 1.23912 1.00529 1.00946 0.94761 1.21516 0.96304 0.87015 0.89181 0.89823 1.42767 1.05392 1.42183 1.47364 1.19140 0.88399 1.13422 1.16692 0.89152 1.24698 0.96733 0.98725 0.99076 1.69703 1.29085 1.28419 1.30918 0.86552 0.85817 0.78564 0.77636 1.21039 1.21751 1.20230 1.23464 1.01047 0.93434 1.00560 1.20374 0.87910 0.86228 0.96250 1.68199 1.03668 1.28297 1.15520 0.88885 0.89129 0.89451 0.81114 0.79808 0.77733 0.76994 0.91377 0.91760 0.92317 0.90449 0.80441 0.93072 0.90334 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.19 36.00 0.37 -0.08 16 2 C 0.21 1.55 6.83 -82.09 -0.56 0.99 16 3 C -0.22 -0.93 9.72 -39.82 -0.39 -1.32 16 4 C 0.17 0.95 11.29 -16.45 -0.19 0.77 16 5 N -0.31 -3.14 3.86 -11.97 -0.05 -3.19 16 6 N -0.31 -3.26 12.58 30.77 0.39 -2.87 16 7 C 0.13 1.26 11.44 -17.13 -0.20 1.06 16 8 C -0.29 -3.68 6.17 -104.65 -0.65 -4.33 16 9 C 0.59 8.70 7.78 -12.90 -0.10 8.60 16 10 O -0.53 -9.96 16.74 5.18 0.09 -9.87 16 11 N -0.72 -8.68 5.55 -61.65 -0.34 -9.03 16 12 C 0.14 1.80 5.51 -4.04 -0.02 1.78 16 13 C -0.13 -1.62 3.75 -89.81 -0.34 -1.96 16 14 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 15 C -0.16 -2.55 7.43 -25.92 -0.19 -2.75 16 16 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 17 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 18 N -0.74 -17.45 5.20 -52.64 -0.27 -17.72 16 19 C -0.25 -6.97 10.45 -15.06 -0.16 -7.12 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 23 Si 0.88 22.41 27.74 -169.99 -4.71 17.70 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 27 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 28 C 0.32 4.13 7.74 -155.83 -1.21 2.92 16 29 N -0.44 -5.48 10.18 -8.24 -0.08 -5.56 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.09 8.09 -51.93 -0.42 -0.33 16 33 H 0.17 -0.02 8.06 -52.49 -0.42 -0.44 16 34 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.21 1.12 7.46 -52.48 -0.39 0.73 16 36 H 0.40 3.52 7.39 -40.82 -0.30 3.22 16 37 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 41 H 0.36 8.50 5.78 -40.82 -0.24 8.27 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -39.34 374.22 -8.77 -48.11 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.98 Total: 6.43 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -4.21 Total: -0.93 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.42 Total: -67.08 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.34 -8.77 -48.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086255830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.818 kcal (2) G-P(sol) polarization free energy of solvation -39.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds